Wall clock time and date at job start Tue Mar 31 2020 17:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 O 1.42908 * 109.47052 * 120.00116 * 2 1 3 5 5 C 1.35491 * 117.00093 * 150.00175 * 4 2 1 6 6 C 1.39169 * 119.52572 * 180.02562 * 5 4 2 7 7 C 1.37956 * 119.26462 * 179.72074 * 6 5 4 8 8 C 1.40286 * 118.35326 * 0.51476 * 7 6 5 9 9 C 1.47620 * 120.49644 * 179.75413 * 8 7 6 10 10 O 1.21576 * 120.00031 * 26.58840 * 9 8 7 11 11 N 1.34777 * 119.99952 * 206.58506 * 9 8 7 12 12 C 1.47025 * 125.64785 * 176.35428 * 11 9 8 13 13 C 1.54426 * 107.27945 * 181.02565 * 12 11 9 14 14 H 1.09002 * 110.72568 * 263.84798 * 13 12 11 15 15 C 1.53001 * 110.75956 * 140.54846 * 13 12 11 16 16 C 1.55148 * 102.89433 * 22.18854 * 13 12 11 17 17 H 1.09007 * 111.00224 * 206.40327 * 16 13 12 18 18 N 1.46503 * 111.00420 * 82.59609 * 16 13 12 19 19 C 1.36933 * 120.00368 * 157.90591 * 18 16 13 20 20 H 1.08008 * 119.99889 * 0.26707 * 19 18 16 21 21 C 1.38810 * 120.00445 * 180.27320 * 19 18 16 22 22 N 1.31619 * 120.00504 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47130 * 90.00088 * 23 21 19 25 25 H 1.48504 * 109.47195 * 209.99885 * 23 21 19 26 26 H 1.48500 * 109.47432 * 329.99807 * 23 21 19 27 27 C 1.47426 * 125.64970 * 356.31676 * 11 9 8 28 28 C 1.39516 * 119.00812 * 359.48832 * 8 7 6 29 29 N 1.31674 * 120.62355 * 0.24481 * 28 8 7 30 30 H 1.08997 * 109.47333 * 299.99794 * 1 2 3 31 31 H 1.09004 * 109.47183 * 60.00353 * 1 2 3 32 32 H 1.09004 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47639 * 239.99772 * 2 1 3 34 34 H 1.08994 * 109.47297 * 300.00052 * 3 2 1 35 35 H 1.09005 * 109.47164 * 59.99932 * 3 2 1 36 36 H 1.08998 * 109.47250 * 179.97438 * 3 2 1 37 37 H 1.07999 * 120.37079 * 0.02562 * 6 5 4 38 38 H 1.07999 * 120.82472 * 180.27884 * 7 6 5 39 39 H 1.08994 * 109.88354 * 300.44929 * 12 11 9 40 40 H 1.09008 * 109.87547 * 61.45779 * 12 11 9 41 41 H 1.09009 * 109.46813 * 306.51223 * 15 13 12 42 42 H 1.09001 * 109.47304 * 66.50956 * 15 13 12 43 43 H 1.08999 * 109.47211 * 186.51542 * 15 13 12 44 44 H 0.97004 * 120.00013 * 338.17588 * 18 16 13 45 45 H 0.96997 * 120.00331 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.36400 * 37.06845 * 27 11 9 47 47 H 1.08998 * 110.36780 * 274.74717 * 27 11 9 48 48 H 1.07995 * 119.69156 * 180.27036 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1971 -1.3121 1.0655 6 6 3.7103 -1.9857 2.1699 7 6 4.9204 -2.6389 2.0590 8 6 5.5950 -2.5876 0.8300 9 6 6.8955 -3.2651 0.6605 10 8 7.1721 -4.2303 1.3460 11 7 7.7764 -2.8135 -0.2542 12 6 9.1302 -3.3431 -0.4744 13 6 9.7742 -2.5025 -1.5984 14 1 9.6615 -2.9973 -2.5631 15 6 11.2496 -2.2324 -1.2962 16 6 8.9555 -1.1852 -1.5582 17 1 8.9560 -0.6950 -2.5318 18 7 9.4612 -0.2842 -0.5196 19 6 9.2108 1.0598 -0.5977 20 1 8.6368 1.4550 -1.4228 21 6 9.6947 1.9142 0.3834 22 7 9.4544 3.2061 0.3080 23 14 10.6870 1.2305 1.8107 24 1 12.1286 1.2257 1.4540 25 1 10.4770 2.0792 3.0111 26 1 10.2444 -0.1568 2.1018 27 6 7.5417 -1.7074 -1.2002 28 6 5.0156 -1.8915 -0.2312 29 7 3.8555 -1.2867 -0.0830 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 0.0005 37 1 3.1650 -2.0012 3.1019 38 1 5.3399 -3.1731 2.8986 39 1 9.7171 -3.2518 0.4394 40 1 9.0744 -4.3891 -0.7762 41 1 11.3422 -1.7906 -0.3040 42 1 11.8049 -3.1698 -1.3297 43 1 11.6527 -1.5445 -2.0393 44 1 9.9768 -0.6391 0.2215 45 1 9.7929 3.8032 0.9933 46 1 6.9556 -0.9204 -0.7257 47 1 7.0349 -2.0730 -2.0932 48 1 5.5233 -1.8487 -1.1835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054722532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:12 Heat of formation + Delta-G solvation = -32.063566 kcal Electronic energy + Delta-G solvation = -29516.527280 eV Core-core repulsion = 25571.827739 eV Total energy + Delta-G solvation = -3944.699542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10854 -41.05512 -39.43609 -38.76004 -35.81988 -34.49506 -33.97862 -33.66483 -32.75867 -31.40307 -29.79770 -28.19497 -27.55128 -25.90889 -25.04849 -25.02056 -23.27849 -22.19793 -20.96312 -20.86333 -19.80236 -19.57979 -18.64124 -17.84630 -17.38880 -16.82442 -16.69470 -16.40129 -15.98237 -15.88005 -15.62889 -15.38191 -14.99059 -14.74200 -14.54269 -14.40031 -14.20492 -14.07243 -13.95850 -13.71492 -13.37899 -13.30218 -13.20277 -13.10870 -13.06893 -12.93546 -12.86349 -12.36715 -12.07751 -11.98379 -11.92919 -11.76650 -11.62977 -11.41796 -11.34770 -11.10559 -11.00119 -10.64739 -9.83794 -9.62937 -9.22511 -8.03135 -5.34088 -0.35324 0.07613 1.32183 1.34047 1.39336 1.63152 1.86117 1.98085 2.44388 2.66855 3.06598 3.27509 3.33784 3.55948 3.69031 3.70834 3.84727 3.87365 3.92608 3.98939 4.01894 4.05809 4.25802 4.36130 4.49698 4.54372 4.59765 4.64573 4.67760 4.69468 4.78686 4.80584 4.84496 4.89904 4.90560 4.94661 4.98153 5.16850 5.18622 5.21631 5.25868 5.29100 5.36643 5.49121 5.79806 6.11692 6.21815 6.40615 6.60740 6.99899 7.07744 7.84869 8.00724 9.18104 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.004049 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.562556 B = 6913.072485 C = 8275.280171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.168 4.168 4 O -0.304 6.304 5 C 0.333 3.667 6 C -0.197 4.197 7 C 0.008 3.992 8 C -0.238 4.238 9 C 0.578 3.422 10 O -0.581 6.581 11 N -0.601 5.601 12 C 0.111 3.889 13 C -0.099 4.099 14 H 0.127 0.873 15 C -0.133 4.133 16 C 0.163 3.837 17 H 0.094 0.906 18 N -0.738 5.738 19 C -0.217 4.217 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.979 5.979 23 Si 0.934 3.066 24 H -0.274 1.274 25 H -0.302 1.302 26 H -0.269 1.269 27 C 0.062 3.938 28 C 0.171 3.829 29 N -0.550 5.550 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.172 0.828 38 H 0.158 0.842 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.362 0.638 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -12.632 -4.283 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 C -0.225 4.225 4 O -0.211 6.211 5 C 0.154 3.846 6 C -0.217 4.217 7 C -0.017 4.017 8 C -0.243 4.243 9 C 0.368 3.632 10 O -0.464 6.464 11 N -0.332 5.332 12 C -0.011 4.011 13 C -0.118 4.118 14 H 0.145 0.855 15 C -0.191 4.191 16 C 0.053 3.947 17 H 0.112 0.888 18 N -0.380 5.380 19 C -0.348 4.348 20 H 0.090 0.910 21 C -0.246 4.246 22 N -0.630 5.630 23 Si 0.763 3.237 24 H -0.200 1.200 25 H -0.230 1.230 26 H -0.194 1.194 27 C -0.063 4.063 28 C 0.014 3.986 29 N -0.274 5.274 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.196 0.804 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.126 0.874 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.313 -12.456 -4.436 18.763 hybrid contribution 1.184 -0.030 1.903 2.241 sum -12.129 -12.486 -2.533 17.590 Atomic orbital electron populations 1.21907 0.90404 1.03473 1.04228 1.22639 0.96174 0.92472 0.86933 1.22217 1.00744 0.95785 1.03767 1.86259 1.30902 1.63824 1.40087 1.20336 0.85953 0.88361 0.89941 1.21235 0.97845 1.02658 0.99942 1.21615 0.91645 0.92107 0.96368 1.20716 0.98022 1.07574 0.98022 1.17778 0.83653 0.82854 0.78882 1.90720 1.79163 1.28857 1.47617 1.48322 1.15130 1.34677 1.35036 1.22151 0.81643 0.98623 0.98643 1.22581 0.95347 0.94566 0.99311 0.85507 1.21616 0.94402 1.01991 1.01090 1.21688 0.90355 0.89912 0.92724 0.88824 1.42765 1.64634 1.03381 1.27252 1.19060 1.26345 0.82939 1.06437 0.91050 1.25241 1.02741 0.95399 1.01180 1.69833 1.52698 1.03299 1.37133 0.85738 0.79904 0.77646 0.80388 1.20001 1.22954 1.19426 1.23715 1.01533 0.88338 0.92665 1.23496 0.88703 0.87037 0.99363 1.67350 1.10831 1.24164 1.25019 0.91293 0.88368 0.91586 0.89745 0.88984 0.91701 0.94497 0.81065 0.82482 0.93508 0.89819 0.95006 0.90449 0.91745 0.80409 0.93597 0.91431 0.87365 0.79474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.56 71.98 0.69 -1.36 16 2 C 0.07 1.55 3.10 30.59 0.09 1.64 16 3 C -0.17 -3.65 9.53 71.98 0.69 -2.96 16 4 O -0.30 -7.72 9.75 -87.92 -0.86 -8.58 16 5 C 0.33 9.28 7.46 84.83 0.63 9.91 16 6 C -0.20 -4.97 10.02 22.43 0.22 -4.75 16 7 C 0.01 0.23 9.71 22.70 0.22 0.45 16 8 C -0.24 -7.35 5.72 -19.99 -0.11 -7.47 16 9 C 0.58 19.71 7.65 86.72 0.66 20.37 16 10 O -0.58 -22.74 17.03 -3.96 -0.07 -22.81 16 11 N -0.60 -18.38 3.33 -815.24 -2.71 -21.09 16 12 C 0.11 3.04 6.46 86.76 0.56 3.60 16 13 C -0.10 -2.34 3.42 -9.57 -0.03 -2.37 16 14 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.13 -3.30 8.72 71.98 0.63 -2.67 16 16 C 0.16 5.03 3.45 46.38 0.16 5.19 16 17 H 0.09 2.76 8.11 -2.38 -0.02 2.74 16 18 N -0.74 -31.12 4.47 -316.38 -1.41 -32.53 16 19 C -0.22 -11.40 10.45 84.03 0.88 -10.52 16 20 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 21 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 22 N -0.98 -61.12 13.97 21.65 0.30 -60.81 16 23 Si 0.93 45.64 27.73 68.60 1.90 47.55 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.27 -12.51 6.52 99.48 0.65 -11.86 16 27 C 0.06 1.76 4.72 86.85 0.41 2.17 16 28 C 0.17 4.90 9.12 85.02 0.78 5.68 16 29 N -0.55 -16.00 8.61 -307.83 -2.65 -18.65 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.08 1.89 6.97 -2.39 -0.02 1.88 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.16 4.02 7.94 -2.91 -0.02 4.00 16 39 H 0.05 1.46 7.77 -2.39 -0.02 1.44 16 40 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.03 0.95 6.42 -2.38 -0.02 0.94 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.36 15.67 4.09 -92.70 -0.38 15.29 16 45 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.07 2.28 6.14 -2.39 -0.01 2.27 16 47 H 0.11 2.20 7.31 -2.39 -0.02 2.18 16 48 H 0.19 4.64 4.54 -2.91 -0.01 4.63 16 Total: -1.00 -72.06 385.36 1.98 -70.08 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.53 Total: 32.53 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.94 Total: 14.32 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -6.47 Total: -133.09 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.92 Total: -31.38 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.55 kcal Total: -72.06 1.98 -70.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054722532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.016 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds