Wall clock time and date at job start Tue Mar 31 2020 17:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 116.99864 * 2 1 4 4 C 1.38745 * 120.47840 * 359.97438 * 3 2 1 5 5 N 1.31818 * 120.68864 * 180.02562 * 4 3 2 6 6 C 1.31877 * 121.77244 * 359.72527 * 5 4 3 7 7 C 1.38205 * 120.89165 * 0.53619 * 6 5 4 8 8 C 1.50701 * 120.38997 * 179.75256 * 7 6 5 9 9 C 1.52997 * 109.47212 * 269.72375 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.47424 * 125.64902 * 179.72080 * 12 10 9 14 14 C 1.55134 * 104.72319 * 155.81644 * 13 12 10 15 15 H 1.08991 * 111.22441 * 279.17443 * 14 13 12 16 16 C 1.53004 * 110.90461 * 155.27049 * 14 13 12 17 17 C 1.55165 * 101.48436 * 37.29284 * 14 13 12 18 18 H 1.08999 * 110.71644 * 205.96878 * 17 14 13 19 19 N 1.46502 * 110.87221 * 82.76677 * 17 14 13 20 20 C 1.36936 * 119.99798 * 159.93050 * 19 17 14 21 21 H 1.07994 * 120.00188 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99969 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99921 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47179 * 90.00106 * 24 22 20 26 26 H 1.48507 * 109.46639 * 209.99973 * 24 22 20 27 27 H 1.48493 * 109.46903 * 329.99588 * 24 22 20 28 28 C 1.47027 * 125.64775 * 0.02562 * 12 10 9 29 29 C 1.38583 * 119.22279 * 359.47958 * 7 6 5 30 30 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47298 * 299.99582 * 1 2 3 32 32 H 1.09000 * 109.47139 * 60.00035 * 1 2 3 33 33 H 1.08006 * 119.65820 * 0.03989 * 4 3 2 34 34 H 1.07998 * 119.55538 * 180.27015 * 6 5 4 35 35 H 1.09002 * 109.47060 * 29.72430 * 8 7 6 36 36 H 1.09001 * 109.47380 * 149.72518 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 38 38 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 39 39 H 1.09008 * 110.36292 * 274.74187 * 13 12 10 40 40 H 1.08992 * 110.36702 * 37.06760 * 13 12 10 41 41 H 1.08994 * 109.47270 * 307.97337 * 16 14 13 42 42 H 1.09001 * 109.46736 * 67.97928 * 16 14 13 43 43 H 1.09000 * 109.46853 * 187.97558 * 16 14 13 44 44 H 0.97005 * 119.99685 * 339.93947 * 19 17 14 45 45 H 0.96994 * 120.00027 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.88328 * 300.44291 * 28 12 10 47 47 H 1.09005 * 109.87859 * 61.60939 * 28 12 10 48 48 H 1.08000 * 120.81369 * 180.22735 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8941 3.5575 -0.0010 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0004 8 6 5.5180 2.6964 0.0002 9 6 6.0263 2.7443 -1.4421 10 6 7.5263 2.8890 -1.4415 11 8 8.1295 2.9476 -0.3910 12 7 8.1976 2.9534 -2.6085 13 6 9.6574 3.1000 -2.7530 14 6 9.9763 2.5105 -4.1521 15 1 10.0320 1.4225 -4.1184 16 6 11.2690 3.1058 -4.7136 17 6 8.7456 2.9793 -4.9727 18 1 8.5641 2.3087 -5.8126 19 7 8.9239 4.3562 -5.4402 20 6 8.1845 4.8224 -6.4943 21 1 7.4697 4.1752 -6.9807 22 6 8.3537 6.1269 -6.9377 23 7 9.2252 6.9155 -6.3453 24 14 7.3446 6.7631 -8.3752 25 1 6.0840 7.3623 -7.8683 26 1 8.1227 7.7937 -9.1085 27 1 7.0251 5.6391 -9.2915 28 6 7.5947 2.8952 -3.9482 29 6 3.4344 1.2953 0.0001 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2213 2.3268 -0.0003 34 1 3.6570 4.6543 0.0081 35 1 5.7943 3.6173 0.5136 36 1 5.9646 1.8455 0.5147 37 1 5.7500 1.8233 -1.9555 38 1 5.5798 3.5950 -1.9567 39 1 9.9391 4.1521 -2.7089 40 1 10.1740 2.5352 -1.9771 41 1 11.2157 4.1937 -4.6730 42 1 12.1156 2.7610 -4.1199 43 1 11.3966 2.7867 -5.7480 44 1 9.5657 4.9375 -5.0032 45 1 9.3437 7.8269 -6.6553 46 1 7.0561 1.9557 -4.0719 47 1 6.9143 3.7358 -4.0852 48 1 4.0428 0.4029 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:19 Heat of formation + Delta-G solvation = -29.068210 kcal Electronic energy + Delta-G solvation = -28186.710884 eV Core-core repulsion = 24242.141231 eV Total energy + Delta-G solvation = -3944.569653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96082 -39.83519 -38.54273 -37.67892 -34.65069 -33.95070 -32.45842 -31.66562 -30.53954 -29.92700 -27.92627 -27.72794 -26.50667 -24.52605 -23.86176 -23.71295 -22.13712 -21.39126 -19.31412 -18.78410 -18.17431 -17.57400 -17.37884 -16.92859 -16.57362 -16.22787 -15.91424 -15.38147 -14.76755 -14.58919 -14.46406 -13.92042 -13.84837 -13.71799 -13.47456 -13.31795 -13.04051 -12.96081 -12.51162 -12.35857 -12.33547 -12.23268 -11.95619 -11.88181 -11.84277 -11.57755 -11.14833 -11.13421 -10.94664 -10.79473 -10.48939 -10.28289 -9.95615 -9.83924 -9.68919 -9.66818 -9.49904 -9.03474 -8.70498 -8.25751 -7.09567 -5.86606 -3.16801 0.82467 1.03955 2.79285 2.88557 3.28727 3.37928 3.43490 3.45180 3.55264 4.20781 4.34266 4.50375 4.51329 4.63736 4.72571 4.74873 4.79168 4.88560 4.97900 5.04357 5.07182 5.16316 5.24022 5.32502 5.35053 5.48626 5.53268 5.62670 5.68008 5.71713 5.76934 5.91727 5.93959 6.00783 6.09896 6.17221 6.24158 6.25225 6.32845 6.34774 6.50809 6.61821 6.73402 6.86046 6.90506 7.61132 7.71193 7.88259 8.31256 8.42358 9.43294 9.97938 10.32679 11.35455 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.002646 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.444832 B =10580.080440 C =12062.225078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.077 3.923 4 C 0.010 3.990 5 N -0.447 5.447 6 C 0.067 3.933 7 C -0.088 4.088 8 C -0.061 4.061 9 C -0.130 4.130 10 C 0.526 3.474 11 O -0.557 6.557 12 N -0.606 5.606 13 C 0.114 3.886 14 C -0.114 4.114 15 H 0.078 0.922 16 C -0.131 4.131 17 C 0.172 3.828 18 H 0.069 0.931 19 N -0.712 5.712 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.070 3.930 29 C -0.106 4.106 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 -13.965 11.905 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.030 3.970 4 C -0.148 4.148 5 N -0.156 5.156 6 C -0.091 4.091 7 C -0.090 4.090 8 C -0.099 4.099 9 C -0.170 4.170 10 C 0.315 3.685 11 O -0.437 6.437 12 N -0.339 5.339 13 C -0.008 4.008 14 C -0.134 4.134 15 H 0.097 0.903 16 C -0.189 4.189 17 C 0.059 3.941 18 H 0.087 0.913 19 N -0.353 5.353 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.056 4.056 29 C -0.133 4.133 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.052 -13.334 12.343 21.803 hybrid contribution -0.309 0.003 -0.781 0.839 sum -12.361 -13.330 11.562 21.544 Atomic orbital electron populations 1.23120 0.77982 1.04353 1.01623 1.86081 1.21660 1.26130 1.88596 1.20062 0.93145 0.85711 0.98107 1.22886 1.00469 0.87309 1.04133 1.67555 1.12178 1.26385 1.09440 1.22668 0.88517 0.98949 0.98933 1.20814 0.97475 0.92842 0.97829 1.20306 0.88349 1.05016 0.96243 1.21592 0.92542 1.04776 0.98102 1.20179 0.89490 0.76417 0.82435 1.90670 1.70368 1.51901 1.30732 1.48471 1.08344 1.70960 1.06116 1.22303 0.80442 1.01032 0.97013 1.22651 0.96796 0.99560 0.94367 0.90330 1.21547 0.94584 1.02269 1.00503 1.21200 0.90496 0.89221 0.93153 0.91270 1.42451 1.47664 1.07654 1.37553 1.19212 1.15952 0.95502 1.07113 0.91021 1.24753 0.99403 0.96643 0.99687 1.69655 1.37412 1.07405 1.43154 0.86204 0.79429 0.78503 0.82097 1.21669 1.21762 1.20696 1.23299 0.99411 1.00662 0.82216 1.20852 0.91546 0.98575 1.02299 0.87904 0.92417 0.92318 0.82707 0.82270 0.89323 0.89710 0.88979 0.88497 0.91235 0.91331 0.91207 0.93659 0.92108 0.77730 0.93354 0.92736 0.90410 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.88 10.51 -19.45 -0.20 -3.09 16 3 C 0.08 0.79 6.71 -39.08 -0.26 0.53 16 4 C 0.01 0.10 10.22 -17.37 -0.18 -0.07 16 5 N -0.45 -5.45 10.36 -13.13 -0.14 -5.58 16 6 C 0.07 0.76 10.85 -17.54 -0.19 0.57 16 7 C -0.09 -0.93 5.15 -104.51 -0.54 -1.47 16 8 C -0.06 -0.66 4.66 -27.88 -0.13 -0.79 16 9 C -0.13 -1.57 4.87 -27.89 -0.14 -1.71 16 10 C 0.53 8.35 7.85 -10.99 -0.09 8.26 16 11 O -0.56 -10.36 16.24 5.55 0.09 -10.27 16 12 N -0.61 -9.85 3.32 -170.38 -0.57 -10.42 16 13 C 0.11 1.86 6.36 -2.41 -0.02 1.84 16 14 C -0.11 -1.73 3.53 -88.34 -0.31 -2.04 16 15 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.13 -2.02 8.85 37.16 0.33 -1.69 16 17 C 0.17 3.05 3.36 -66.09 -0.22 2.83 16 18 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 19 N -0.71 -16.18 4.62 -51.65 -0.24 -16.42 16 20 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 24 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 C 0.07 1.13 6.23 -3.06 -0.02 1.11 16 29 C -0.11 -1.10 9.81 -39.14 -0.38 -1.48 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 32 H 0.06 0.26 7.68 -51.93 -0.40 -0.13 16 33 H 0.16 1.19 6.32 -52.48 -0.33 0.86 16 34 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.08 0.92 8.05 -51.93 -0.42 0.51 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.25 7.99 -51.92 -0.41 0.83 16 40 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.07 1.25 6.39 -51.93 -0.33 0.92 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.39 9.50 6.11 -40.82 -0.25 9.25 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 48 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -31.84 394.44 -8.38 -40.22 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.57 Total: 9.05 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.40 Total: 0.20 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.22 Total: -58.51 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.11 Total: -13.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.84 -8.38 -40.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.152 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds