Wall clock time and date at job start Tue Mar 31 2020 17:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 116.99864 * 2 1 4 4 C 1.38745 * 120.47840 * 359.97438 * 3 2 1 5 5 N 1.31818 * 120.68864 * 180.02562 * 4 3 2 6 6 C 1.31877 * 121.77244 * 359.72527 * 5 4 3 7 7 C 1.38205 * 120.89165 * 0.53619 * 6 5 4 8 8 C 1.50701 * 120.38997 * 179.75256 * 7 6 5 9 9 C 1.52997 * 109.47212 * 269.72375 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.47424 * 125.64902 * 179.72080 * 12 10 9 14 14 C 1.55134 * 104.72319 * 155.81644 * 13 12 10 15 15 H 1.08991 * 111.22441 * 279.17443 * 14 13 12 16 16 C 1.53004 * 110.90461 * 155.27049 * 14 13 12 17 17 C 1.55165 * 101.48436 * 37.29284 * 14 13 12 18 18 H 1.08999 * 110.71644 * 205.96878 * 17 14 13 19 19 N 1.46502 * 110.87221 * 82.76677 * 17 14 13 20 20 C 1.36936 * 119.99798 * 159.93050 * 19 17 14 21 21 H 1.07994 * 120.00188 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99969 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99921 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47179 * 90.00106 * 24 22 20 26 26 H 1.48507 * 109.46639 * 209.99973 * 24 22 20 27 27 H 1.48493 * 109.46903 * 329.99588 * 24 22 20 28 28 C 1.47027 * 125.64775 * 0.02562 * 12 10 9 29 29 C 1.38583 * 119.22279 * 359.47958 * 7 6 5 30 30 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47298 * 299.99582 * 1 2 3 32 32 H 1.09000 * 109.47139 * 60.00035 * 1 2 3 33 33 H 1.08006 * 119.65820 * 0.03989 * 4 3 2 34 34 H 1.07998 * 119.55538 * 180.27015 * 6 5 4 35 35 H 1.09002 * 109.47060 * 29.72430 * 8 7 6 36 36 H 1.09001 * 109.47380 * 149.72518 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 38 38 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 39 39 H 1.09008 * 110.36292 * 274.74187 * 13 12 10 40 40 H 1.08992 * 110.36702 * 37.06760 * 13 12 10 41 41 H 1.08994 * 109.47270 * 307.97337 * 16 14 13 42 42 H 1.09001 * 109.46736 * 67.97928 * 16 14 13 43 43 H 1.09000 * 109.46853 * 187.97558 * 16 14 13 44 44 H 0.97005 * 119.99685 * 339.93947 * 19 17 14 45 45 H 0.96994 * 120.00027 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.88328 * 300.44291 * 28 12 10 47 47 H 1.09005 * 109.87859 * 61.60939 * 28 12 10 48 48 H 1.08000 * 120.81369 * 180.22735 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8941 3.5575 -0.0010 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0004 8 6 5.5180 2.6964 0.0002 9 6 6.0263 2.7443 -1.4421 10 6 7.5263 2.8890 -1.4415 11 8 8.1295 2.9476 -0.3910 12 7 8.1976 2.9534 -2.6085 13 6 9.6574 3.1000 -2.7530 14 6 9.9763 2.5105 -4.1521 15 1 10.0320 1.4225 -4.1184 16 6 11.2690 3.1058 -4.7136 17 6 8.7456 2.9793 -4.9727 18 1 8.5641 2.3087 -5.8126 19 7 8.9239 4.3562 -5.4402 20 6 8.1845 4.8224 -6.4943 21 1 7.4697 4.1752 -6.9807 22 6 8.3537 6.1269 -6.9377 23 7 9.2252 6.9155 -6.3453 24 14 7.3446 6.7631 -8.3752 25 1 6.0840 7.3623 -7.8683 26 1 8.1227 7.7937 -9.1085 27 1 7.0251 5.6391 -9.2915 28 6 7.5947 2.8952 -3.9482 29 6 3.4344 1.2953 0.0001 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2213 2.3268 -0.0003 34 1 3.6570 4.6543 0.0081 35 1 5.7943 3.6173 0.5136 36 1 5.9646 1.8455 0.5147 37 1 5.7500 1.8233 -1.9555 38 1 5.5798 3.5950 -1.9567 39 1 9.9391 4.1521 -2.7089 40 1 10.1740 2.5352 -1.9771 41 1 11.2157 4.1937 -4.6730 42 1 12.1156 2.7610 -4.1199 43 1 11.3966 2.7867 -5.7480 44 1 9.5657 4.9375 -5.0032 45 1 9.3437 7.8269 -6.6553 46 1 7.0561 1.9557 -4.0719 47 1 6.9143 3.7358 -4.0852 48 1 4.0428 0.4029 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054884744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:18 Heat of formation + Delta-G solvation = -48.915649 kcal Electronic energy + Delta-G solvation = -28187.571533 eV Core-core repulsion = 24242.141231 eV Total energy + Delta-G solvation = -3945.430303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73235 -41.10718 -39.32647 -38.95111 -35.70039 -35.54476 -33.91605 -32.52253 -32.18230 -30.83245 -29.28716 -28.46633 -27.62366 -25.81764 -25.39790 -24.54869 -23.43283 -22.26720 -20.69462 -20.05428 -19.37503 -18.88026 -18.16483 -17.89408 -17.61911 -17.28501 -16.83118 -16.66336 -16.28729 -15.93303 -15.50062 -15.24699 -14.80013 -14.70025 -14.66527 -14.42294 -14.31725 -14.07375 -13.77791 -13.51171 -13.29427 -13.24561 -13.01547 -12.97392 -12.87006 -12.76599 -12.70763 -12.41806 -12.31345 -12.11849 -12.06252 -11.95415 -11.44518 -11.35417 -11.05756 -10.87557 -10.47036 -10.44730 -9.60531 -9.45621 -8.99076 -7.90990 -5.18890 0.03606 0.24719 1.50726 1.51174 1.59114 1.63056 2.06493 2.21833 2.58743 2.72340 3.36436 3.41218 3.53411 3.63008 3.73560 3.88885 3.92944 3.94648 3.97413 4.04453 4.10747 4.13279 4.30919 4.38668 4.39536 4.45087 4.48173 4.57599 4.66798 4.68003 4.73828 4.75900 4.87960 4.90334 4.92697 5.00183 5.02998 5.11876 5.23120 5.27439 5.30883 5.36425 5.48849 5.55422 5.61323 6.21117 6.30709 6.60523 6.91410 7.15499 7.38267 8.13284 8.35531 9.32340 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.002646 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.444832 B =10580.080440 C =12062.225078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.076 3.924 4 C 0.006 3.994 5 N -0.472 5.472 6 C 0.052 3.948 7 C -0.086 4.086 8 C -0.051 4.051 9 C -0.121 4.121 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.610 5.610 13 C 0.114 3.886 14 C -0.098 4.098 15 H 0.111 0.889 16 C -0.126 4.126 17 C 0.160 3.840 18 H 0.081 0.919 19 N -0.724 5.724 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.966 3.034 25 H -0.292 1.292 26 H -0.302 1.302 27 H -0.266 1.266 28 C 0.081 3.919 29 C -0.112 4.112 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.178 0.822 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.375 0.625 45 H 0.248 0.752 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -16.648 11.773 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.028 3.972 4 C -0.152 4.152 5 N -0.181 5.181 6 C -0.105 4.105 7 C -0.088 4.088 8 C -0.090 4.090 9 C -0.161 4.161 10 C 0.312 3.688 11 O -0.469 6.469 12 N -0.342 5.342 13 C -0.009 4.009 14 C -0.118 4.118 15 H 0.129 0.871 16 C -0.184 4.184 17 C 0.050 3.950 18 H 0.099 0.901 19 N -0.364 5.364 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.220 1.220 26 H -0.229 1.229 27 H -0.191 1.191 28 C -0.044 4.044 29 C -0.139 4.139 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.195 0.805 34 H 0.182 0.818 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.660 -16.081 12.208 24.377 hybrid contribution 0.134 0.706 -0.670 0.982 sum -13.527 -15.375 11.538 23.505 Atomic orbital electron populations 1.23434 0.75970 1.06086 1.02545 1.86073 1.23774 1.25530 1.88324 1.20133 0.93274 0.86173 0.97591 1.23262 1.01639 0.86906 1.03429 1.67565 1.12591 1.27471 1.10437 1.22829 0.88646 0.99574 0.99439 1.20675 0.96918 0.92921 0.98248 1.20182 0.88626 1.04711 0.95444 1.21588 0.89556 1.05794 0.99140 1.20830 0.90866 0.75373 0.81705 1.90655 1.71343 1.53202 1.31687 1.48583 1.08319 1.70923 1.06403 1.22260 0.80916 0.99718 0.98019 1.22616 0.95349 1.01120 0.92713 0.87107 1.21477 0.95896 1.00136 1.00876 1.21494 0.92470 0.86834 0.94221 0.90107 1.42619 1.47119 1.09548 1.37082 1.19630 1.14806 0.95278 1.06701 0.89928 1.25477 1.01174 0.97441 1.02561 1.69815 1.39811 1.07305 1.45106 0.85241 0.77614 0.77889 0.79624 1.21980 1.22945 1.19086 1.23076 0.98244 1.01576 0.81521 1.21063 0.92032 0.98832 1.01938 0.85885 0.91352 0.91507 0.80495 0.81816 0.90164 0.89504 0.86817 0.88422 0.93896 0.90477 0.94474 0.91090 0.92415 0.79171 0.94315 0.89116 0.92652 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 113.37 1.11 1.22 16 2 O -0.32 -5.29 10.51 -92.49 -0.97 -6.26 16 3 C 0.08 1.43 6.71 22.60 0.15 1.58 16 4 C 0.01 0.11 10.22 84.82 0.87 0.97 16 5 N -0.47 -11.10 10.36 -195.44 -2.02 -13.12 16 6 C 0.05 1.16 10.85 84.68 0.92 2.07 16 7 C -0.09 -1.72 5.15 -19.79 -0.10 -1.82 16 8 C -0.05 -1.06 4.66 29.85 0.14 -0.92 16 9 C -0.12 -2.73 4.87 29.85 0.15 -2.58 16 10 C 0.52 15.95 7.85 87.66 0.69 16.64 16 11 O -0.59 -21.53 16.24 -3.05 -0.05 -21.58 16 12 N -0.61 -18.98 3.32 -811.34 -2.70 -21.67 16 13 C 0.11 3.59 6.36 86.93 0.55 4.14 16 14 C -0.10 -2.80 3.53 -9.32 -0.03 -2.83 16 15 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.13 -3.76 8.85 71.98 0.64 -3.12 16 17 C 0.16 5.40 3.36 46.18 0.16 5.56 16 18 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 19 N -0.72 -32.86 4.62 -317.32 -1.47 -34.33 16 20 C -0.23 -11.82 9.98 84.03 0.84 -10.98 16 21 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 23 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 24 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 C 0.08 2.45 6.23 86.73 0.54 2.99 16 29 C -0.11 -2.12 9.81 22.56 0.22 -1.90 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.41 7.68 -2.39 -0.02 0.39 16 32 H 0.07 0.44 7.68 -2.39 -0.02 0.42 16 33 H 0.18 2.36 6.32 -2.91 -0.02 2.34 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 36 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.58 7.99 -2.38 -0.02 1.56 16 40 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 41 H 0.04 1.35 6.39 -2.39 -0.02 1.34 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.37 18.89 6.11 -92.70 -0.57 18.33 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 1.95 8.04 -2.38 -0.02 1.93 16 48 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -69.47 394.44 2.79 -66.67 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.39 Total: 33.67 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 7.30 Total: 7.42 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -5.90 Total: -126.47 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.02 Total: -27.84 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.47 2.79 -66.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.759 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds