Wall clock time and date at job start Tue Mar 31 2020 17:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35917 * 116.99835 * 2 1 4 4 C 1.38741 * 120.47635 * 359.97438 * 3 2 1 5 5 N 1.31813 * 120.68358 * 180.02562 * 4 3 2 6 6 C 1.31870 * 121.77919 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.89057 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.39247 * 179.74887 * 7 6 5 9 9 C 1.52998 * 109.47402 * 89.99593 * 8 7 6 10 10 C 1.50704 * 109.47400 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99437 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00153 * 180.02562 * 10 9 8 13 13 C 1.47029 * 125.64676 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26809 * 181.02184 * 13 12 10 15 15 H 1.08997 * 110.72219 * 263.65207 * 14 13 12 16 16 N 1.46502 * 110.71634 * 140.55650 * 14 13 12 17 17 C 1.36934 * 119.99842 * 86.45606 * 16 14 13 18 18 H 1.08003 * 120.00301 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99991 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47453 * 90.00022 * 21 19 17 23 23 H 1.48505 * 109.47132 * 210.00168 * 21 19 17 24 24 H 1.48499 * 109.46955 * 329.99728 * 21 19 17 25 25 C 1.55159 * 102.94305 * 22.19473 * 14 13 12 26 26 H 1.08998 * 111.00423 * 82.57491 * 25 14 13 27 27 C 1.53002 * 111.00239 * 206.38383 * 25 14 13 28 28 C 1.47420 * 125.64836 * 179.71642 * 12 10 9 29 29 C 1.38579 * 119.21843 * 0.02562 * 7 6 5 30 30 H 1.08998 * 109.47383 * 300.00226 * 1 2 3 31 31 H 1.09006 * 109.47109 * 60.00549 * 1 2 3 32 32 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.08008 * 119.65769 * 0.04420 * 4 3 2 34 34 H 1.07996 * 119.55860 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47323 * 210.00053 * 8 7 6 36 36 H 1.09008 * 109.46762 * 329.99925 * 8 7 6 37 37 H 1.09002 * 109.47006 * 300.00484 * 9 8 7 38 38 H 1.09002 * 109.46903 * 59.99943 * 9 8 7 39 39 H 1.08999 * 109.88257 * 300.43788 * 13 12 10 40 40 H 1.08999 * 109.88110 * 61.45706 * 13 12 10 41 41 H 0.97004 * 119.99967 * 266.45097 * 16 14 13 42 42 H 0.96996 * 119.99650 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47211 * 60.00088 * 27 25 14 44 44 H 1.08999 * 109.46998 * 179.97438 * 27 25 14 45 45 H 1.08996 * 109.47058 * 299.99870 * 27 25 14 46 46 H 1.09000 * 110.36690 * 274.74290 * 28 12 10 47 47 H 1.08996 * 110.37112 * 37.07026 * 28 12 10 48 48 H 1.08002 * 120.80974 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2079 3.6721 -0.0006 7 6 4.0179 2.5522 0.0010 8 6 5.5180 2.6963 -0.0041 9 6 6.0301 2.7504 1.4365 10 6 7.5302 2.8951 1.4314 11 8 8.1304 2.9501 0.3789 12 7 8.2046 2.9635 2.5962 13 6 7.6054 2.9090 3.9377 14 6 8.7542 3.0493 4.9586 15 1 9.0812 2.0701 5.3083 16 7 8.3455 3.8904 6.0863 17 6 7.6964 3.3336 7.1558 18 1 7.4854 2.2744 7.1677 19 6 7.3096 4.1304 8.2246 20 7 7.5663 5.4213 8.2098 21 14 6.4248 3.3708 9.6838 22 1 7.4214 2.9317 10.6933 23 1 5.5161 4.3767 10.2902 24 1 5.6332 2.2000 9.2279 25 6 9.8702 3.7425 4.1329 26 1 9.7164 4.8209 4.0963 27 6 11.2544 3.4076 4.6921 28 6 9.6659 3.0989 2.7362 29 6 3.4344 1.2953 0.0016 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2213 2.3268 -0.0002 34 1 3.6569 4.6543 -0.0006 35 1 5.9631 1.8433 -0.5162 36 1 5.7929 3.6151 -0.5222 37 1 5.5849 3.6035 1.9486 38 1 5.7551 1.8317 1.9547 39 1 6.8976 3.7286 4.0612 40 1 7.0964 1.9554 4.0779 41 1 8.5348 4.8417 6.0755 42 1 7.2964 5.9780 8.9568 43 1 11.4104 2.3295 4.6546 44 1 12.0179 3.9058 4.0947 45 1 11.3211 3.7486 5.7252 46 1 10.1434 2.1200 2.6936 47 1 10.0630 3.7499 1.9574 48 1 4.0428 0.4030 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:21 Heat of formation + Delta-G solvation = -32.698239 kcal Electronic energy + Delta-G solvation = -28006.131452 eV Core-core repulsion = 24061.404389 eV Total energy + Delta-G solvation = -3944.727063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95669 -39.87889 -38.52932 -37.64975 -34.67652 -34.09529 -32.57556 -31.67275 -30.76173 -29.95610 -27.91070 -27.53653 -26.59771 -24.59558 -23.94199 -23.71096 -21.78476 -21.26308 -19.98656 -18.89125 -18.16662 -17.38910 -17.16447 -16.95455 -16.76904 -16.21392 -16.05952 -15.40436 -15.06054 -14.56746 -14.25137 -13.94760 -13.82656 -13.60299 -13.46306 -13.32371 -13.08327 -13.04429 -12.65345 -12.47347 -12.35187 -12.25080 -12.16357 -11.95011 -11.84312 -11.56197 -11.17827 -11.17731 -11.02021 -10.77450 -10.64064 -10.29350 -10.00107 -9.89624 -9.76472 -9.67327 -9.53642 -9.03965 -8.69970 -8.35499 -7.13422 -5.88774 -3.19826 0.82582 1.04561 2.80178 2.80733 3.19674 3.36685 3.42481 3.43902 3.54392 4.20653 4.34642 4.46308 4.51592 4.64374 4.74229 4.74610 4.77519 4.87089 4.94505 5.03323 5.08445 5.12156 5.18178 5.24252 5.31277 5.50131 5.53210 5.60663 5.68234 5.68876 5.75152 5.80493 5.88314 5.97329 5.98043 6.08731 6.16876 6.22974 6.24986 6.34719 6.45321 6.52933 6.59020 6.83966 6.87211 7.59320 7.71242 7.78063 8.28216 8.33814 9.40735 9.94309 10.29168 11.33066 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009194 B = 0.002809 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.856836 B = 9964.265653 C =12158.449385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.078 3.922 4 C 0.011 3.989 5 N -0.447 5.447 6 C 0.067 3.933 7 C -0.089 4.089 8 C -0.060 4.060 9 C -0.132 4.132 10 C 0.527 3.473 11 O -0.557 6.557 12 N -0.613 5.613 13 C 0.072 3.928 14 C 0.177 3.823 15 H 0.066 0.934 16 N -0.712 5.712 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.113 4.113 26 H 0.084 0.916 27 C -0.134 4.134 28 C 0.113 3.887 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 -8.291 -16.819 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.030 3.970 4 C -0.147 4.147 5 N -0.156 5.156 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.098 4.098 9 C -0.171 4.171 10 C 0.316 3.684 11 O -0.436 6.436 12 N -0.346 5.346 13 C -0.054 4.054 14 C 0.064 3.936 15 H 0.084 0.916 16 N -0.352 5.352 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.133 4.133 26 H 0.102 0.898 27 C -0.191 4.191 28 C -0.010 4.010 29 C -0.132 4.132 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.970 -7.813 -17.265 20.558 hybrid contribution -0.420 -0.734 1.020 1.325 sum -8.390 -8.547 -16.245 20.183 Atomic orbital electron populations 1.23124 0.77958 1.04379 1.01625 1.86087 1.21682 1.26102 1.88560 1.20066 0.93149 0.85736 0.98001 1.22885 1.00486 0.87295 1.04069 1.67542 1.12162 1.26410 1.09456 1.22642 0.88542 0.98869 0.99051 1.20800 0.97423 0.92872 0.97969 1.20300 0.88425 1.04948 0.96173 1.21610 0.92350 1.05001 0.98181 1.20232 0.89551 0.76234 0.82404 1.90667 1.70625 1.51779 1.30538 1.48569 1.08256 1.71350 1.06388 1.23365 0.99610 1.01412 0.81054 1.21246 0.89940 0.95233 0.87142 0.91623 1.42361 1.68699 1.07649 1.16451 1.19226 1.29817 0.93216 0.95709 0.91001 1.24764 1.01407 0.95541 0.98706 1.69659 1.51776 1.03842 1.32317 0.86203 0.79212 0.77985 0.82830 1.21594 1.21709 1.20670 1.22660 0.96449 1.00720 0.93480 0.89786 1.21612 0.94759 1.01049 1.01727 1.22300 0.80781 1.00302 0.97571 1.20855 0.91577 0.98589 1.02209 0.92275 0.92430 0.87890 0.82677 0.82330 0.89711 0.89377 0.88462 0.88789 0.90737 0.92294 0.77851 0.93315 0.92859 0.93158 0.91327 0.91691 0.90965 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -2.99 10.51 -19.48 -0.20 -3.19 16 3 C 0.08 0.82 6.71 -39.08 -0.26 0.56 16 4 C 0.01 0.11 10.22 -17.37 -0.18 -0.07 16 5 N -0.45 -5.44 10.36 -13.13 -0.14 -5.58 16 6 C 0.07 0.74 10.85 -17.54 -0.19 0.55 16 7 C -0.09 -0.93 5.15 -104.51 -0.54 -1.47 16 8 C -0.06 -0.63 4.66 -27.89 -0.13 -0.76 16 9 C -0.13 -1.55 4.87 -27.88 -0.14 -1.69 16 10 C 0.53 7.91 7.85 -10.99 -0.09 7.82 16 11 O -0.56 -9.76 16.24 5.56 0.09 -9.67 16 12 N -0.61 -9.35 3.32 -170.38 -0.57 -9.92 16 13 C 0.07 1.17 6.24 -3.06 -0.02 1.15 16 14 C 0.18 3.17 3.05 -66.09 -0.20 2.97 16 15 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 16 N -0.71 -16.26 5.18 -51.65 -0.27 -16.52 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 18 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 21 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.11 -1.73 3.26 -88.35 -0.29 -2.02 16 26 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 27 C -0.13 -1.83 9.31 37.16 0.35 -1.48 16 28 C 0.11 1.64 6.38 -2.41 -0.02 1.62 16 29 C -0.11 -1.11 9.81 -39.14 -0.38 -1.50 16 30 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 31 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.16 1.22 6.32 -52.48 -0.33 0.89 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.09 0.93 8.05 -51.92 -0.42 0.51 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.39 9.54 7.71 -40.82 -0.31 9.22 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16 47 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 48 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -31.51 397.95 -8.43 -39.94 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.71 Total: 8.58 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.34 Total: -0.02 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.25 Total: -57.99 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.11 Total: -12.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.51 -8.43 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.245 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds