Wall clock time and date at job start Tue Mar 31 2020 17:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35917 * 116.99835 * 2 1 4 4 C 1.38741 * 120.47635 * 359.97438 * 3 2 1 5 5 N 1.31813 * 120.68358 * 180.02562 * 4 3 2 6 6 C 1.31870 * 121.77919 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.89057 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.39247 * 179.74887 * 7 6 5 9 9 C 1.52998 * 109.47402 * 89.99593 * 8 7 6 10 10 C 1.50704 * 109.47400 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99437 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00153 * 180.02562 * 10 9 8 13 13 C 1.47029 * 125.64676 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26809 * 181.02184 * 13 12 10 15 15 H 1.08997 * 110.72219 * 263.65207 * 14 13 12 16 16 N 1.46502 * 110.71634 * 140.55650 * 14 13 12 17 17 C 1.36934 * 119.99842 * 86.45606 * 16 14 13 18 18 H 1.08003 * 120.00301 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99991 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47453 * 90.00022 * 21 19 17 23 23 H 1.48505 * 109.47132 * 210.00168 * 21 19 17 24 24 H 1.48499 * 109.46955 * 329.99728 * 21 19 17 25 25 C 1.55159 * 102.94305 * 22.19473 * 14 13 12 26 26 H 1.08998 * 111.00423 * 82.57491 * 25 14 13 27 27 C 1.53002 * 111.00239 * 206.38383 * 25 14 13 28 28 C 1.47420 * 125.64836 * 179.71642 * 12 10 9 29 29 C 1.38579 * 119.21843 * 0.02562 * 7 6 5 30 30 H 1.08998 * 109.47383 * 300.00226 * 1 2 3 31 31 H 1.09006 * 109.47109 * 60.00549 * 1 2 3 32 32 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.08008 * 119.65769 * 0.04420 * 4 3 2 34 34 H 1.07996 * 119.55860 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47323 * 210.00053 * 8 7 6 36 36 H 1.09008 * 109.46762 * 329.99925 * 8 7 6 37 37 H 1.09002 * 109.47006 * 300.00484 * 9 8 7 38 38 H 1.09002 * 109.46903 * 59.99943 * 9 8 7 39 39 H 1.08999 * 109.88257 * 300.43788 * 13 12 10 40 40 H 1.08999 * 109.88110 * 61.45706 * 13 12 10 41 41 H 0.97004 * 119.99967 * 266.45097 * 16 14 13 42 42 H 0.96996 * 119.99650 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47211 * 60.00088 * 27 25 14 44 44 H 1.08999 * 109.46998 * 179.97438 * 27 25 14 45 45 H 1.08996 * 109.47058 * 299.99870 * 27 25 14 46 46 H 1.09000 * 110.36690 * 274.74290 * 28 12 10 47 47 H 1.08996 * 110.37112 * 37.07026 * 28 12 10 48 48 H 1.08002 * 120.80974 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2079 3.6721 -0.0006 7 6 4.0179 2.5522 0.0010 8 6 5.5180 2.6963 -0.0041 9 6 6.0301 2.7504 1.4365 10 6 7.5302 2.8951 1.4314 11 8 8.1304 2.9501 0.3789 12 7 8.2046 2.9635 2.5962 13 6 7.6054 2.9090 3.9377 14 6 8.7542 3.0493 4.9586 15 1 9.0812 2.0701 5.3083 16 7 8.3455 3.8904 6.0863 17 6 7.6964 3.3336 7.1558 18 1 7.4854 2.2744 7.1677 19 6 7.3096 4.1304 8.2246 20 7 7.5663 5.4213 8.2098 21 14 6.4248 3.3708 9.6838 22 1 7.4214 2.9317 10.6933 23 1 5.5161 4.3767 10.2902 24 1 5.6332 2.2000 9.2279 25 6 9.8702 3.7425 4.1329 26 1 9.7164 4.8209 4.0963 27 6 11.2544 3.4076 4.6921 28 6 9.6659 3.0989 2.7362 29 6 3.4344 1.2953 0.0016 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2213 2.3268 -0.0002 34 1 3.6569 4.6543 -0.0006 35 1 5.9631 1.8433 -0.5162 36 1 5.7929 3.6151 -0.5222 37 1 5.5849 3.6035 1.9486 38 1 5.7551 1.8317 1.9547 39 1 6.8976 3.7286 4.0612 40 1 7.0964 1.9554 4.0779 41 1 8.5348 4.8417 6.0755 42 1 7.2964 5.9780 8.9568 43 1 11.4104 2.3295 4.6546 44 1 12.0179 3.9058 4.0947 45 1 11.3211 3.7486 5.7252 46 1 10.1434 2.1200 2.6936 47 1 10.0630 3.7499 1.9574 48 1 4.0428 0.4030 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054884746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:20 Heat of formation + Delta-G solvation = -52.153218 kcal Electronic energy + Delta-G solvation = -28006.975083 eV Core-core repulsion = 24061.404389 eV Total energy + Delta-G solvation = -3945.570694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73642 -41.10292 -39.30617 -38.90926 -35.85613 -35.55481 -33.94052 -32.60964 -32.35624 -30.84059 -29.09716 -28.47570 -27.63096 -25.94420 -25.33570 -24.54662 -23.02102 -22.25291 -21.36162 -20.09475 -19.06207 -18.90332 -18.16430 -18.01828 -17.65443 -17.31756 -16.85010 -16.63379 -16.50421 -15.78524 -15.33782 -15.24390 -14.85012 -14.79002 -14.60917 -14.37588 -14.23330 -14.07980 -14.03630 -13.60085 -13.39206 -13.22521 -13.02661 -12.97145 -12.83714 -12.80598 -12.71948 -12.42727 -12.22957 -12.10692 -12.07019 -12.01099 -11.66547 -11.39125 -11.05432 -10.88104 -10.48167 -10.44819 -9.62855 -9.46136 -9.04275 -7.92957 -5.22425 0.03087 0.24318 1.51088 1.51327 1.59366 1.60636 2.00548 2.20822 2.57936 2.71970 3.32872 3.39345 3.52542 3.62493 3.73235 3.82790 3.91158 3.91567 3.96236 4.03438 4.11346 4.24613 4.29913 4.35640 4.37395 4.40961 4.46407 4.49119 4.59533 4.64562 4.72813 4.74234 4.85919 4.91865 4.92632 4.93625 5.10399 5.13461 5.16381 5.27021 5.28101 5.34259 5.48666 5.50654 5.57316 6.20288 6.27861 6.53920 6.90960 7.12569 7.35747 8.07765 8.31321 9.29960 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009194 B = 0.002809 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.856836 B = 9964.265653 C =12158.449385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.074 3.926 4 C 0.005 3.995 5 N -0.472 5.472 6 C 0.054 3.946 7 C -0.087 4.087 8 C -0.050 4.050 9 C -0.125 4.125 10 C 0.526 3.474 11 O -0.581 6.581 12 N -0.615 5.615 13 C 0.086 3.914 14 C 0.169 3.831 15 H 0.069 0.931 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.081 0.919 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.289 1.289 23 H -0.300 1.300 24 H -0.268 1.268 25 C -0.104 4.104 26 H 0.070 0.930 27 C -0.128 4.128 28 C 0.116 3.884 29 C -0.115 4.115 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -10.130 -17.615 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.027 3.973 4 C -0.153 4.153 5 N -0.180 5.180 6 C -0.103 4.103 7 C -0.089 4.089 8 C -0.088 4.088 9 C -0.165 4.165 10 C 0.316 3.684 11 O -0.462 6.462 12 N -0.347 5.347 13 C -0.040 4.040 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.099 0.901 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.796 3.204 22 H -0.216 1.216 23 H -0.227 1.227 24 H -0.193 1.193 25 C -0.124 4.124 26 H 0.089 0.911 27 C -0.186 4.186 28 C -0.006 4.006 29 C -0.141 4.141 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.195 0.805 34 H 0.186 0.814 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.505 -9.704 -18.097 22.226 hybrid contribution -0.257 -0.235 1.170 1.220 sum -8.762 -9.939 -16.928 21.497 Atomic orbital electron populations 1.23431 0.75978 1.06064 1.02545 1.86074 1.23784 1.25611 1.88348 1.20155 0.93314 0.86199 0.97663 1.23248 1.01624 0.86920 1.03461 1.67559 1.12685 1.27365 1.10430 1.22872 0.88572 0.99633 0.99261 1.20715 0.97118 0.92858 0.98213 1.20186 0.88429 1.04919 0.95290 1.21612 0.90003 1.05631 0.99237 1.20719 0.90645 0.75296 0.81715 1.90658 1.71430 1.52904 1.31221 1.48609 1.08623 1.71416 1.06082 1.22988 0.98429 1.01416 0.81167 1.21443 0.91367 0.94863 0.86410 0.91271 1.42480 1.68721 1.07520 1.17391 1.19608 1.27952 0.93498 0.95917 0.90139 1.25485 1.03334 0.95993 1.01465 1.69807 1.53961 1.05116 1.32882 0.85245 0.77995 0.77250 0.79898 1.21638 1.22739 1.19265 1.22563 0.96498 0.99722 0.93592 0.91132 1.21568 0.94258 1.02175 1.00588 1.22331 0.80547 1.01064 0.96704 1.21078 0.92047 0.98953 1.02026 0.91596 0.91237 0.85934 0.80543 0.81386 0.89616 0.89555 0.88189 0.87627 0.92332 0.91055 0.79260 0.94118 0.91434 0.91027 0.93501 0.90085 0.90803 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.33 -5.70 10.51 -92.61 -0.97 -6.68 16 3 C 0.07 1.47 6.71 22.60 0.15 1.62 16 4 C 0.01 0.10 10.22 84.82 0.87 0.97 16 5 N -0.47 -11.12 10.36 -195.44 -2.02 -13.14 16 6 C 0.05 1.17 10.85 84.68 0.92 2.08 16 7 C -0.09 -1.74 5.15 -19.79 -0.10 -1.84 16 8 C -0.05 -0.99 4.66 29.85 0.14 -0.85 16 9 C -0.13 -2.77 4.87 29.85 0.15 -2.62 16 10 C 0.53 15.02 7.85 87.66 0.69 15.71 16 11 O -0.58 -19.60 16.24 -3.03 -0.05 -19.64 16 12 N -0.61 -17.79 3.32 -811.36 -2.70 -20.49 16 13 C 0.09 2.69 6.24 86.73 0.54 3.23 16 14 C 0.17 5.90 3.05 46.18 0.14 6.04 16 15 H 0.07 2.39 8.02 -2.39 -0.02 2.37 16 16 N -0.72 -32.98 5.18 -317.32 -1.64 -34.63 16 17 C -0.24 -12.13 9.98 84.03 0.84 -11.29 16 18 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 21 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 C -0.10 -3.05 3.26 -9.32 -0.03 -3.08 16 26 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16 27 C -0.13 -3.30 9.31 71.98 0.67 -2.63 16 28 C 0.12 3.14 6.38 86.93 0.55 3.69 16 29 C -0.11 -2.27 9.81 22.56 0.22 -2.04 16 30 H 0.07 0.52 7.68 -2.39 -0.02 0.50 16 31 H 0.07 0.47 7.68 -2.38 -0.02 0.45 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.18 2.48 6.32 -2.91 -0.02 2.46 16 34 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 36 H 0.09 1.75 8.05 -2.38 -0.02 1.73 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.05 8.03 -2.39 -0.02 2.03 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.37 18.84 7.71 -92.71 -0.72 18.12 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.96 7.99 -2.39 -0.02 1.95 16 47 H 0.07 2.01 8.03 -2.39 -0.02 1.99 16 48 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -66.99 397.95 2.49 -64.50 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.24 Total: 33.55 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.32 Total: 6.88 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.08 Total: -124.64 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.02 Total: -26.32 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.99 2.49 -64.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.349 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds