Wall clock time and date at job start Tue Mar 31 2020 17:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35676 * 117.00369 * 2 1 4 4 C 1.38920 * 119.68782 * 179.97438 * 3 2 1 5 5 C 1.38384 * 119.10908 * 179.74615 * 4 3 2 6 6 C 1.38822 * 118.48312 * 0.54053 * 5 4 3 7 7 C 1.50706 * 120.35345 * 179.73578 * 6 5 4 8 8 C 1.52999 * 109.46906 * 269.72250 * 7 6 5 9 9 C 1.50697 * 109.47301 * 179.97438 * 8 7 6 10 10 O 1.21289 * 119.99700 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00483 * 179.97438 * 9 8 7 12 12 C 1.47743 * 125.81887 * 359.90665 * 11 9 8 13 13 C 1.54909 * 104.83995 * 155.82587 * 12 11 9 14 14 H 1.08989 * 111.04037 * 279.00643 * 13 12 11 15 15 N 1.46498 * 111.00162 * 155.16578 * 13 12 11 16 16 C 1.36942 * 120.00022 * 92.80865 * 15 13 12 17 17 H 1.08006 * 119.99757 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47060 * 120.00490 * 20 18 16 23 23 H 1.48500 * 109.47199 * 240.00019 * 20 18 16 24 24 C 1.55159 * 101.57990 * 37.09908 * 13 12 11 25 25 H 1.08999 * 110.72303 * 82.85766 * 24 13 12 26 26 C 1.53005 * 110.87083 * 206.06082 * 24 13 12 27 27 C 1.47020 * 125.64983 * 179.97438 * 11 9 8 28 28 C 1.38044 * 119.29480 * 359.45634 * 6 5 4 29 29 N 1.31960 * 120.83234 * 0.28110 * 28 6 5 30 30 H 1.08995 * 109.47415 * 300.00421 * 1 2 3 31 31 H 1.09005 * 109.46683 * 59.99945 * 1 2 3 32 32 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.07994 * 120.44588 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.75347 * 180.29106 * 5 4 3 35 35 H 1.08994 * 109.47096 * 149.72105 * 7 6 5 36 36 H 1.09003 * 109.46962 * 29.71604 * 7 6 5 37 37 H 1.09004 * 109.47321 * 60.00016 * 8 7 6 38 38 H 1.08999 * 109.46995 * 299.99930 * 8 7 6 39 39 H 1.09003 * 110.29227 * 37.02448 * 12 11 9 40 40 H 1.08996 * 110.53057 * 274.75660 * 12 11 9 41 41 H 0.96998 * 120.00750 * 272.81024 * 15 13 12 42 42 H 0.96996 * 120.00537 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46692 * 175.06169 * 26 24 13 44 44 H 1.08997 * 109.47070 * 295.05832 * 26 24 13 45 45 H 1.09002 * 109.47183 * 55.06216 * 26 24 13 46 46 H 1.09002 * 109.88367 * 61.60808 * 27 11 9 47 47 H 1.09000 * 109.88319 * 300.59426 * 27 11 9 48 48 H 1.07997 * 119.58487 * 180.29724 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0485 2.5131 -0.0048 6 6 3.2505 3.6490 0.0009 7 6 3.8768 5.0198 0.0014 8 6 4.0882 5.4833 1.4441 9 6 4.7151 6.8537 1.4447 10 8 4.9683 7.4052 0.3945 11 7 4.9944 7.4666 2.6122 12 6 4.7397 6.9171 3.9598 13 6 5.7477 7.6465 4.8826 14 1 6.7348 7.1883 4.8235 15 7 5.2671 7.6751 6.2662 16 6 5.6398 6.6896 7.1410 17 1 6.2884 5.8915 6.8109 18 6 5.1850 6.7168 8.4522 19 7 4.3950 7.6896 8.8546 20 14 5.6929 5.3721 9.6451 21 1 6.5775 4.4024 8.9506 22 1 6.4222 5.9752 10.7895 23 1 4.4831 4.6700 10.1439 24 6 5.7581 9.0712 4.2681 25 1 4.9192 9.6585 4.6417 26 6 7.0833 9.7795 4.5564 27 6 5.6033 8.7969 2.7574 28 6 1.8771 3.5097 0.0004 29 7 1.3186 2.3141 -0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0229 0.3695 0.0005 34 1 5.1254 2.5946 -0.0093 35 1 3.2185 5.7202 -0.5125 36 1 4.8375 4.9804 -0.5120 37 1 4.7466 4.7828 1.9581 38 1 3.1276 5.5226 1.9576 39 1 4.9239 5.8428 3.9710 40 1 3.7172 7.1292 4.2721 41 1 4.6849 8.3919 6.5629 42 1 4.0768 7.7085 9.7707 43 1 7.1009 10.7405 4.0423 44 1 7.1835 9.9399 5.6299 45 1 7.9094 9.1629 4.2024 46 1 4.9575 9.5513 2.3080 47 1 6.5811 8.8116 2.2757 48 1 1.2518 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054894154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:27 Heat of formation + Delta-G solvation = -33.234929 kcal Electronic energy + Delta-G solvation = -27902.443973 eV Core-core repulsion = 23957.693637 eV Total energy + Delta-G solvation = -3944.750336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89792 -39.87496 -38.34974 -37.61551 -34.32346 -34.10525 -32.60510 -32.34967 -30.79131 -29.91323 -27.67830 -27.54421 -26.42797 -24.50933 -23.92295 -23.61892 -21.88922 -21.33481 -19.92896 -18.93959 -18.64444 -17.38088 -17.26104 -16.97169 -16.24092 -16.09822 -15.52028 -15.14286 -14.89929 -14.70082 -14.51913 -14.20080 -13.79158 -13.59658 -13.36521 -13.33971 -13.13724 -13.01830 -12.76464 -12.56901 -12.38152 -12.19911 -11.93122 -11.73602 -11.64697 -11.33057 -11.18573 -11.15176 -11.04982 -10.76810 -10.64335 -10.25854 -10.11657 -10.00397 -9.87477 -9.83088 -9.66857 -9.07050 -8.59601 -8.37973 -7.14176 -5.90504 -3.21447 0.90385 1.02276 2.79344 2.85060 3.17712 3.35503 3.41972 3.43785 3.53861 4.07803 4.40720 4.50377 4.67836 4.71995 4.77305 4.91173 4.98050 5.04127 5.05461 5.07241 5.11846 5.18768 5.20671 5.36089 5.42715 5.49124 5.52757 5.60663 5.66571 5.72444 5.76063 5.80646 5.90102 5.96629 5.98438 6.13669 6.17869 6.20606 6.21204 6.33525 6.42813 6.49975 6.58810 6.81790 6.97588 7.58559 7.60577 7.76520 8.26430 8.33153 9.39093 9.92357 10.27198 11.31382 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.002719 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.618621 B =10295.699467 C =12705.035840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.312 3.688 4 C -0.187 4.187 5 C -0.036 4.036 6 C -0.168 4.168 7 C -0.053 4.053 8 C -0.132 4.132 9 C 0.526 3.474 10 O -0.557 6.557 11 N -0.614 5.614 12 C 0.071 3.929 13 C 0.177 3.823 14 H 0.069 0.931 15 N -0.710 5.710 16 C -0.248 4.248 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.928 5.928 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.115 4.115 25 H 0.083 0.917 26 C -0.133 4.133 27 C 0.116 3.884 28 C 0.144 3.856 29 N -0.538 5.538 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -8.045 -18.139 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.170 4.170 7 C -0.092 4.092 8 C -0.171 4.171 9 C 0.315 3.685 10 O -0.436 6.436 11 N -0.347 5.347 12 C -0.055 4.055 13 C 0.065 3.935 14 H 0.087 0.913 15 N -0.349 5.349 16 C -0.379 4.379 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.135 4.135 25 H 0.102 0.898 26 C -0.191 4.191 27 C -0.007 4.007 28 C -0.012 4.012 29 N -0.261 5.261 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.530 -8.302 -18.619 20.689 hybrid contribution 0.508 -0.399 0.997 1.188 sum -3.022 -8.700 -17.623 19.884 Atomic orbital electron populations 1.22850 0.77230 1.02869 1.02519 1.86227 1.22937 1.24670 1.87925 1.19864 0.89470 0.84711 0.92620 1.21071 0.92001 0.99591 1.08104 1.21373 1.00672 0.90708 0.93435 1.20770 0.94758 0.96499 1.05015 1.20178 1.01910 0.91390 0.95689 1.21638 1.02696 0.94237 0.98573 1.20286 0.78515 0.87452 0.82292 1.90670 1.54782 1.67332 1.30807 1.48636 1.60756 1.18838 1.06470 1.23595 1.01921 0.99261 0.80697 1.21361 0.95239 0.91677 0.85261 0.91348 1.42307 1.58153 1.30250 1.04201 1.19281 1.24795 1.02880 0.90961 0.90937 1.24764 0.99857 0.98416 0.97394 1.69662 1.37624 1.32971 1.17314 0.86131 0.77725 0.81119 0.81253 1.20446 1.21759 1.21757 1.22527 0.99327 0.98637 0.93028 0.89847 1.21648 0.95708 0.99182 1.02544 1.21957 0.97848 0.84161 0.96748 1.22340 0.92309 0.93581 0.92959 1.67322 1.40916 0.98802 1.19091 0.92201 0.92366 0.88704 0.84116 0.83972 0.89945 0.89999 0.88786 0.88785 0.91221 0.91148 0.77853 0.93350 0.93246 0.91410 0.92897 0.92113 0.91726 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.38 10.48 -18.73 -0.20 -3.58 16 3 C 0.31 3.58 7.49 -17.12 -0.13 3.45 16 4 C -0.19 -1.84 10.04 -39.28 -0.39 -2.24 16 5 C -0.04 -0.33 9.85 -39.31 -0.39 -0.72 16 6 C -0.17 -1.63 5.15 -104.47 -0.54 -2.17 16 7 C -0.05 -0.53 4.66 -27.88 -0.13 -0.66 16 8 C -0.13 -1.47 4.70 -27.88 -0.13 -1.60 16 9 C 0.53 7.70 7.85 -10.99 -0.09 7.62 16 10 O -0.56 -9.63 16.31 5.55 0.09 -9.54 16 11 N -0.61 -9.21 3.34 -170.26 -0.57 -9.78 16 12 C 0.07 1.14 6.41 -2.35 -0.02 1.12 16 13 C 0.18 3.17 3.17 -65.78 -0.21 2.96 16 14 H 0.07 1.26 7.99 -51.94 -0.42 0.85 16 15 N -0.71 -16.08 5.24 -51.35 -0.27 -16.35 16 16 C -0.25 -6.35 9.96 -15.06 -0.15 -6.50 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 20 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.12 -1.75 3.19 -88.78 -0.28 -2.03 16 25 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 26 C -0.13 -1.85 9.14 37.16 0.34 -1.51 16 27 C 0.12 1.68 6.45 -3.07 -0.02 1.66 16 28 C 0.14 1.48 10.85 -17.57 -0.19 1.29 16 29 N -0.54 -6.30 9.22 -13.33 -0.12 -6.42 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 36 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.07 7.50 -51.93 -0.39 0.68 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.39 9.42 7.76 -40.82 -0.32 9.10 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 48 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -30.99 399.85 -8.51 -39.50 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.80 Total: 7.92 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.37 Total: 1.74 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.24 Total: -58.34 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.11 Total: -13.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.99 -8.51 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054894154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds