Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35676 * 117.00369 * 2 1 4 4 C 1.38920 * 119.68782 * 179.97438 * 3 2 1 5 5 C 1.38384 * 119.10908 * 179.74615 * 4 3 2 6 6 C 1.38822 * 118.48312 * 0.54053 * 5 4 3 7 7 C 1.50706 * 120.35345 * 179.73578 * 6 5 4 8 8 C 1.52999 * 109.46906 * 269.72250 * 7 6 5 9 9 C 1.50697 * 109.47301 * 179.97438 * 8 7 6 10 10 O 1.21289 * 119.99700 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00483 * 179.97438 * 9 8 7 12 12 C 1.47743 * 125.81887 * 359.90665 * 11 9 8 13 13 C 1.54909 * 104.83995 * 155.82587 * 12 11 9 14 14 H 1.08989 * 111.04037 * 279.00643 * 13 12 11 15 15 N 1.46498 * 111.00162 * 155.16578 * 13 12 11 16 16 C 1.36942 * 120.00022 * 92.80865 * 15 13 12 17 17 H 1.08006 * 119.99757 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47060 * 120.00490 * 20 18 16 23 23 H 1.48500 * 109.47199 * 240.00019 * 20 18 16 24 24 C 1.55159 * 101.57990 * 37.09908 * 13 12 11 25 25 H 1.08999 * 110.72303 * 82.85766 * 24 13 12 26 26 C 1.53005 * 110.87083 * 206.06082 * 24 13 12 27 27 C 1.47020 * 125.64983 * 179.97438 * 11 9 8 28 28 C 1.38044 * 119.29480 * 359.45634 * 6 5 4 29 29 N 1.31960 * 120.83234 * 0.28110 * 28 6 5 30 30 H 1.08995 * 109.47415 * 300.00421 * 1 2 3 31 31 H 1.09005 * 109.46683 * 59.99945 * 1 2 3 32 32 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.07994 * 120.44588 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.75347 * 180.29106 * 5 4 3 35 35 H 1.08994 * 109.47096 * 149.72105 * 7 6 5 36 36 H 1.09003 * 109.46962 * 29.71604 * 7 6 5 37 37 H 1.09004 * 109.47321 * 60.00016 * 8 7 6 38 38 H 1.08999 * 109.46995 * 299.99930 * 8 7 6 39 39 H 1.09003 * 110.29227 * 37.02448 * 12 11 9 40 40 H 1.08996 * 110.53057 * 274.75660 * 12 11 9 41 41 H 0.96998 * 120.00750 * 272.81024 * 15 13 12 42 42 H 0.96996 * 120.00537 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46692 * 175.06169 * 26 24 13 44 44 H 1.08997 * 109.47070 * 295.05832 * 26 24 13 45 45 H 1.09002 * 109.47183 * 55.06216 * 26 24 13 46 46 H 1.09002 * 109.88367 * 61.60808 * 27 11 9 47 47 H 1.09000 * 109.88319 * 300.59426 * 27 11 9 48 48 H 1.07997 * 119.58487 * 180.29724 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0485 2.5131 -0.0048 6 6 3.2505 3.6490 0.0009 7 6 3.8768 5.0198 0.0014 8 6 4.0882 5.4833 1.4441 9 6 4.7151 6.8537 1.4447 10 8 4.9683 7.4052 0.3945 11 7 4.9944 7.4666 2.6122 12 6 4.7397 6.9171 3.9598 13 6 5.7477 7.6465 4.8826 14 1 6.7348 7.1883 4.8235 15 7 5.2671 7.6751 6.2662 16 6 5.6398 6.6896 7.1410 17 1 6.2884 5.8915 6.8109 18 6 5.1850 6.7168 8.4522 19 7 4.3950 7.6896 8.8546 20 14 5.6929 5.3721 9.6451 21 1 6.5775 4.4024 8.9506 22 1 6.4222 5.9752 10.7895 23 1 4.4831 4.6700 10.1439 24 6 5.7581 9.0712 4.2681 25 1 4.9192 9.6585 4.6417 26 6 7.0833 9.7795 4.5564 27 6 5.6033 8.7969 2.7574 28 6 1.8771 3.5097 0.0004 29 7 1.3186 2.3141 -0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0229 0.3695 0.0005 34 1 5.1254 2.5946 -0.0093 35 1 3.2185 5.7202 -0.5125 36 1 4.8375 4.9804 -0.5120 37 1 4.7466 4.7828 1.9581 38 1 3.1276 5.5226 1.9576 39 1 4.9239 5.8428 3.9710 40 1 3.7172 7.1292 4.2721 41 1 4.6849 8.3919 6.5629 42 1 4.0768 7.7085 9.7707 43 1 7.1009 10.7405 4.0423 44 1 7.1835 9.9399 5.6299 45 1 7.9094 9.1629 4.2024 46 1 4.9575 9.5513 2.3080 47 1 6.5811 8.8116 2.2757 48 1 1.2518 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054894154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -53.008513 kcal Electronic energy + Delta-G solvation = -27903.301420 eV Core-core repulsion = 23957.693637 eV Total energy + Delta-G solvation = -3945.607783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67183 -41.07761 -39.22179 -38.80683 -35.84858 -35.17565 -33.90709 -33.16859 -32.49497 -30.77305 -29.12108 -28.38075 -27.45315 -25.88753 -25.25771 -24.37347 -23.07019 -22.38396 -21.28738 -20.10401 -19.38126 -19.12096 -18.16315 -18.10401 -17.39979 -16.99641 -16.68502 -16.45446 -15.93127 -15.65823 -15.43590 -15.32621 -15.25210 -14.63104 -14.49390 -14.46246 -14.40457 -14.13188 -14.02104 -13.68094 -13.31494 -13.13108 -13.02247 -12.89369 -12.87455 -12.83352 -12.53073 -12.19310 -12.10399 -12.05154 -12.01835 -11.98402 -11.69041 -11.39576 -11.03039 -10.89500 -10.78760 -10.60669 -9.65197 -9.37067 -9.02123 -7.93338 -5.22544 0.14173 0.27899 1.50269 1.51887 1.60414 1.63404 2.01283 2.16107 2.57899 2.75249 3.32790 3.38241 3.40574 3.73598 3.82244 3.93607 3.97429 3.99299 4.04134 4.17909 4.21811 4.26970 4.33983 4.40628 4.41577 4.45596 4.49207 4.58194 4.65616 4.71228 4.74227 4.75345 4.90248 4.90869 4.95418 4.99794 5.12061 5.14657 5.16509 5.26315 5.37071 5.38423 5.47220 5.50171 5.57521 6.22968 6.27799 6.55602 6.83530 7.15098 7.35798 8.07414 8.31196 9.29676 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.002719 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.618621 B =10295.699467 C =12705.035840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.292 3.708 4 C -0.192 4.192 5 C -0.035 4.035 6 C -0.167 4.167 7 C -0.043 4.043 8 C -0.126 4.126 9 C 0.525 3.475 10 O -0.582 6.582 11 N -0.615 5.615 12 C 0.086 3.914 13 C 0.170 3.830 14 H 0.067 0.933 15 N -0.720 5.720 16 C -0.237 4.237 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.297 1.297 24 C -0.106 4.106 25 H 0.076 0.924 26 C -0.128 4.128 27 C 0.118 3.882 28 C 0.133 3.867 29 N -0.557 5.557 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -9.021 -19.342 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.113 3.887 4 C -0.213 4.213 5 C -0.060 4.060 6 C -0.169 4.169 7 C -0.081 4.081 8 C -0.165 4.165 9 C 0.316 3.684 10 O -0.463 6.463 11 N -0.348 5.348 12 C -0.040 4.040 13 C 0.059 3.941 14 H 0.085 0.915 15 N -0.359 5.359 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.225 1.225 23 H -0.224 1.224 24 C -0.126 4.126 25 H 0.095 0.905 26 C -0.186 4.186 27 C -0.005 4.005 28 C -0.022 4.022 29 N -0.281 5.281 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.209 0.791 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.607 -9.297 -19.876 22.097 hybrid contribution 0.244 -0.065 1.259 1.284 sum -2.363 -9.362 -18.617 20.972 Atomic orbital electron populations 1.23009 0.76116 1.04493 1.02052 1.86209 1.24160 1.24680 1.87988 1.20209 0.90315 0.84855 0.93301 1.21342 0.91605 1.00642 1.07665 1.21680 1.01859 0.90135 0.92294 1.20747 0.94574 0.96531 1.05092 1.20063 1.01899 0.91371 0.94789 1.21661 1.02893 0.92273 0.99682 1.20837 0.77822 0.88284 0.81497 1.90663 1.55882 1.68249 1.31524 1.48670 1.60913 1.18986 1.06239 1.23225 1.00560 0.99444 0.80760 1.21527 0.95251 0.93832 0.83458 0.91545 1.42405 1.58151 1.29401 1.05893 1.19637 1.23153 1.02864 0.91227 0.90220 1.25468 1.00934 1.00589 0.99214 1.69801 1.39684 1.34997 1.17189 0.85188 0.77101 0.79024 0.79128 1.18850 1.22492 1.22431 1.22426 0.99914 0.96950 0.93263 0.90524 1.21607 0.95089 1.00422 1.01474 1.21950 0.98359 0.84239 0.95923 1.22644 0.93004 0.93689 0.92913 1.67315 1.41595 0.99315 1.19841 0.92909 0.92552 0.86079 0.82494 0.81614 0.90191 0.89902 0.87611 0.88060 0.90273 0.92100 0.79128 0.94089 0.90933 0.93429 0.92161 0.91617 0.91007 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 113.37 1.18 1.77 16 2 O -0.32 -6.82 10.48 -89.94 -0.94 -7.76 16 3 C 0.29 6.46 7.49 84.79 0.63 7.09 16 4 C -0.19 -3.47 10.04 22.47 0.23 -3.25 16 5 C -0.03 -0.55 9.85 22.44 0.22 -0.33 16 6 C -0.17 -2.93 5.15 -19.77 -0.10 -3.03 16 7 C -0.04 -0.76 4.66 29.85 0.14 -0.62 16 8 C -0.13 -2.52 4.70 29.85 0.14 -2.38 16 9 C 0.52 14.30 7.85 87.66 0.69 14.99 16 10 O -0.58 -19.08 16.31 -3.06 -0.05 -19.13 16 11 N -0.62 -17.27 3.34 -810.98 -2.71 -19.98 16 12 C 0.09 2.61 6.41 86.79 0.56 3.17 16 13 C 0.17 5.88 3.17 46.38 0.15 6.02 16 14 H 0.07 2.34 7.99 -2.39 -0.02 2.32 16 15 N -0.72 -32.44 5.24 -316.38 -1.66 -34.10 16 16 C -0.24 -11.98 9.96 84.03 0.84 -11.14 16 17 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 19 N -0.97 -56.04 13.06 21.65 0.28 -55.76 16 20 Si 0.97 43.73 29.55 68.60 2.03 45.76 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 C -0.11 -3.07 3.19 -9.60 -0.03 -3.10 16 25 H 0.08 2.35 8.00 -2.39 -0.02 2.34 16 26 C -0.13 -3.36 9.14 71.98 0.66 -2.71 16 27 C 0.12 3.20 6.45 86.73 0.56 3.76 16 28 C 0.13 2.58 10.85 84.63 0.92 3.50 16 29 N -0.56 -12.68 9.22 -308.95 -2.85 -15.53 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.10 -2.38 -0.02 0.85 16 32 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 36 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 37 H 0.11 1.91 7.86 -2.38 -0.02 1.90 16 38 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.26 7.50 -2.39 -0.02 2.24 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.38 18.53 7.76 -92.71 -0.72 17.81 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 1.87 7.82 -2.39 -0.02 1.85 16 48 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.82 399.85 1.57 -64.24 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.23 Total: 31.78 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.24 Total: 10.47 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -6.93 Total: -125.37 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.99 Total: -26.89 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.82 1.57 -64.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054894154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds