Wall clock time and date at job start Tue Mar 31 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 O 1.42889 * 109.47093 * 120.00017 * 2 1 3 5 5 C 1.35664 * 116.99957 * 152.92685 * 4 2 1 6 6 C 1.38941 * 120.58193 * 5.04781 * 5 4 2 7 7 N 1.31627 * 120.79646 * 180.26082 * 6 5 4 8 8 C 1.31902 * 122.14761 * 359.73907 * 7 6 5 9 9 C 1.37963 * 121.07330 * 0.02562 * 8 7 6 10 10 C 1.39949 * 119.07436 * 359.97438 * 9 8 7 11 11 C 1.47832 * 120.96771 * 179.97438 * 10 9 8 12 12 O 1.21553 * 119.99963 * 137.15785 * 11 10 9 13 13 N 1.34775 * 120.00244 * 317.16347 * 11 10 9 14 14 C 1.47751 * 125.82106 * 174.60959 * 13 11 10 15 15 C 1.54914 * 104.83742 * 155.83182 * 14 13 11 16 16 H 1.09000 * 111.00226 * 279.01959 * 15 14 13 17 17 C 1.53000 * 111.03755 * 155.18295 * 15 14 13 18 18 C 1.55152 * 101.58171 * 37.09155 * 15 14 13 19 19 H 1.09006 * 110.72055 * 206.13049 * 18 15 14 20 20 N 1.46499 * 110.72246 * 82.86255 * 18 15 14 21 21 C 1.36933 * 120.00395 * 160.01996 * 20 18 15 22 22 H 1.08001 * 119.99873 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00169 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99827 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99865 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47152 * 89.99827 * 25 23 21 27 27 H 1.48500 * 109.46822 * 210.00218 * 25 23 21 28 28 H 1.48497 * 109.47047 * 329.99740 * 25 23 21 29 29 C 1.47021 * 125.64791 * 354.70223 * 13 11 10 30 30 H 1.09002 * 109.47367 * 300.00124 * 1 2 3 31 31 H 1.09004 * 109.47434 * 59.99355 * 1 2 3 32 32 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47084 * 240.00425 * 2 1 3 34 34 H 1.09004 * 109.47496 * 300.00607 * 3 2 1 35 35 H 1.09010 * 109.47025 * 60.00054 * 3 2 1 36 36 H 1.08995 * 109.47549 * 179.97438 * 3 2 1 37 37 H 1.08005 * 119.60343 * 0.02562 * 6 5 4 38 38 H 1.07999 * 119.46336 * 180.02562 * 8 7 6 39 39 H 1.08007 * 120.46817 * 179.97438 * 9 8 7 40 40 H 1.08992 * 110.29353 * 37.02794 * 14 13 11 41 41 H 1.08998 * 110.43168 * 274.70547 * 14 13 11 42 42 H 1.08997 * 109.46758 * 307.78427 * 17 15 14 43 43 H 1.08997 * 109.46841 * 67.78473 * 17 15 14 44 44 H 1.09000 * 109.46743 * 187.78562 * 17 15 14 45 45 H 0.97002 * 119.99675 * 340.02422 * 20 18 15 46 46 H 0.97001 * 119.99795 * 179.97438 * 24 23 21 47 47 H 1.09006 * 109.88212 * 61.60970 * 29 13 11 48 48 H 1.08999 * 109.88177 * 300.60120 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2263 -1.2610 1.0838 6 6 4.0075 -1.1104 -0.0554 7 7 5.1896 -1.6826 -0.1424 8 6 5.6891 -2.4139 0.8352 9 6 4.9862 -2.6141 2.0053 10 6 3.7237 -2.0276 2.1492 11 6 2.9341 -2.2151 3.3848 12 8 2.3482 -1.2725 3.8805 13 7 2.8640 -3.4311 3.9618 14 6 2.2102 -3.7405 5.2501 15 6 1.8563 -5.2462 5.1638 16 1 0.9372 -5.3997 4.5983 17 6 1.7487 -5.8659 6.5585 18 6 3.0816 -5.8107 4.3974 19 1 2.8138 -6.7191 3.8576 20 7 4.1964 -6.0607 5.3144 21 6 5.2024 -6.9162 4.9521 22 1 5.1742 -7.4062 3.9901 23 6 6.2585 -7.1534 5.8213 24 7 7.2256 -7.9753 5.4728 25 14 6.3068 -6.3063 7.4855 26 1 5.6144 -7.1513 8.4913 27 1 7.7192 -6.1039 7.8970 28 1 5.6253 -4.9904 7.3910 29 6 3.4283 -4.6732 3.4139 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 3.1299 1.4426 0.0005 37 1 3.6386 -0.5197 -0.8810 38 1 6.6641 -2.8632 0.7177 39 1 5.4043 -3.2151 2.7994 40 1 1.3054 -3.1443 5.3676 41 1 2.8955 -3.5587 6.0779 42 1 2.6508 -5.6401 7.1270 43 1 0.8816 -5.4527 7.0737 44 1 1.6370 -6.9464 6.4683 45 1 4.2218 -5.6203 6.1783 46 1 7.9638 -8.1408 6.0800 47 1 4.5104 -4.5798 3.3218 48 1 2.9898 -4.8806 2.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054930828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:45 Heat of formation + Delta-G solvation = -31.885603 kcal Electronic energy + Delta-G solvation = -29667.176797 eV Core-core repulsion = 25722.484972 eV Total energy + Delta-G solvation = -3944.691825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19236 -40.92276 -39.51749 -39.03883 -35.82411 -34.66476 -34.18826 -33.18052 -32.46532 -31.32199 -29.71675 -28.25661 -27.83308 -25.93165 -25.31950 -24.68336 -23.44248 -22.22609 -21.11055 -20.91291 -19.80833 -19.17434 -18.53855 -18.10305 -17.23137 -17.08200 -16.61432 -16.23795 -16.00171 -15.96149 -15.80215 -15.36561 -15.27389 -14.81246 -14.64608 -14.59013 -14.31605 -14.09061 -13.67375 -13.58921 -13.57039 -13.38841 -13.21832 -13.04956 -12.97621 -12.88338 -12.76616 -12.39991 -12.13044 -12.06401 -11.95142 -11.87614 -11.62711 -11.51212 -11.34862 -11.04580 -10.86308 -10.54802 -9.75458 -9.55689 -9.32392 -7.99381 -5.32380 -0.35614 0.00006 1.38779 1.39294 1.46177 1.55921 1.83719 1.96306 2.48927 2.62904 3.18411 3.29972 3.34288 3.49624 3.55140 3.64043 3.69830 3.80556 3.84207 3.94158 3.99064 4.05431 4.09288 4.30372 4.37847 4.52058 4.53865 4.61097 4.61989 4.66806 4.76339 4.78338 4.79534 4.82653 4.85030 4.92073 4.96212 5.15104 5.17594 5.20168 5.23151 5.26480 5.38595 5.46216 5.82787 6.16434 6.24511 6.37245 6.75024 6.93729 7.10056 7.85197 8.03109 9.21534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.003500 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.324512 B = 7997.669616 C = 9082.610957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 C -0.176 4.176 4 O -0.307 6.307 5 C 0.124 3.876 6 C 0.019 3.981 7 N -0.443 5.443 8 C 0.056 3.944 9 C -0.098 4.098 10 C -0.141 4.141 11 C 0.577 3.423 12 O -0.565 6.565 13 N -0.604 5.604 14 C 0.111 3.889 15 C -0.100 4.100 16 H 0.111 0.889 17 C -0.131 4.131 18 C 0.170 3.830 19 H 0.085 0.915 20 N -0.738 5.738 21 C -0.221 4.221 22 H 0.070 0.930 23 C -0.053 4.053 24 N -0.979 5.979 25 Si 0.937 3.063 26 H -0.277 1.277 27 H -0.302 1.302 28 H -0.260 1.260 29 C 0.076 3.924 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.365 0.635 46 H 0.256 0.744 47 H 0.070 0.930 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 14.884 -11.618 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.004 3.996 3 C -0.233 4.233 4 O -0.219 6.219 5 C 0.074 3.926 6 C -0.141 4.141 7 N -0.153 5.153 8 C -0.100 4.100 9 C -0.118 4.118 10 C -0.152 4.152 11 C 0.366 3.634 12 O -0.445 6.445 13 N -0.336 5.336 14 C -0.011 4.011 15 C -0.120 4.120 16 H 0.129 0.871 17 C -0.189 4.189 18 C 0.060 3.940 19 H 0.103 0.897 20 N -0.381 5.381 21 C -0.351 4.351 22 H 0.088 0.912 23 C -0.245 4.245 24 N -0.629 5.629 25 Si 0.765 3.235 26 H -0.203 1.203 27 H -0.229 1.229 28 H -0.185 1.185 29 C -0.049 4.049 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.210 0.790 38 H 0.204 0.796 39 H 0.166 0.834 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.200 0.800 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.849 15.416 -12.076 23.985 hybrid contribution 0.400 0.138 1.943 1.988 sum -13.449 15.554 -10.133 22.924 Atomic orbital electron populations 1.21891 0.91075 1.03221 1.04082 1.22982 0.96824 0.93402 0.86420 1.22367 1.01700 0.95014 1.04220 1.86275 1.29346 1.65920 1.40373 1.20120 0.86939 0.91492 0.94097 1.23361 0.91162 1.02384 0.97159 1.67456 1.11879 1.05785 1.30195 1.22942 1.01399 0.97138 0.88478 1.22482 0.92538 0.96764 1.00016 1.19735 0.97405 1.03260 0.94834 1.17836 0.80296 0.81612 0.83665 1.90741 1.47191 1.40956 1.65572 1.48462 1.55241 1.07276 1.22617 1.22430 0.97287 0.96730 0.84629 1.22623 0.98555 0.92236 0.98565 0.87073 1.21560 1.01561 1.01312 0.94461 1.21390 0.87075 0.95175 0.90370 0.89706 1.42797 1.23896 1.53231 1.18181 1.19019 0.98403 1.16524 1.01200 0.91249 1.25284 0.97131 1.00594 1.01519 1.69843 1.13197 1.41709 1.38168 0.85696 0.76494 0.79363 0.81901 1.20346 1.22872 1.18546 1.23214 0.99145 0.84060 0.98471 0.92450 0.87306 0.92227 0.88780 0.87762 0.92491 0.92457 0.79049 0.79592 0.83363 0.90104 0.92473 0.94107 0.90442 0.91640 0.80023 0.93499 0.91217 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.56 71.98 0.69 -1.27 16 2 C 0.06 0.96 2.84 30.59 0.09 1.04 16 3 C -0.18 -2.41 9.24 71.98 0.67 -1.74 16 4 O -0.31 -8.18 8.81 -78.72 -0.69 -8.88 16 5 C 0.12 3.37 6.63 22.95 0.15 3.52 16 6 C 0.02 0.43 9.55 84.89 0.81 1.24 16 7 N -0.44 -11.00 10.32 -195.58 -2.02 -13.02 16 8 C 0.06 1.37 11.16 84.62 0.94 2.31 16 9 C -0.10 -2.73 8.56 22.62 0.19 -2.54 16 10 C -0.14 -4.35 5.45 -19.81 -0.11 -4.46 16 11 C 0.58 20.33 7.28 86.78 0.63 20.96 16 12 O -0.56 -23.15 16.63 7.19 0.12 -23.03 16 13 N -0.60 -19.48 3.34 -814.38 -2.72 -22.20 16 14 C 0.11 3.29 6.40 86.79 0.56 3.85 16 15 C -0.10 -2.62 3.51 -9.40 -0.03 -2.66 16 16 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 17 C -0.13 -3.31 8.85 71.98 0.64 -2.67 16 18 C 0.17 5.52 3.37 46.18 0.16 5.67 16 19 H 0.09 2.72 8.12 -2.38 -0.02 2.70 16 20 N -0.74 -30.48 4.42 -317.34 -1.40 -31.88 16 21 C -0.22 -11.32 10.46 84.04 0.88 -10.44 16 22 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 23 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 24 N -0.98 -59.67 13.97 21.65 0.30 -59.36 16 25 Si 0.94 43.68 27.74 68.60 1.90 45.59 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.26 -11.21 6.52 99.48 0.65 -10.57 16 29 C 0.08 2.38 5.63 86.73 0.49 2.86 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.15 6.18 -2.39 -0.01 1.14 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.85 7.21 -2.39 -0.02 0.83 16 37 H 0.19 2.99 5.56 -2.91 -0.02 2.97 16 38 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.15 4.28 6.03 -2.91 -0.02 4.27 16 40 H 0.08 2.30 8.00 -2.39 -0.02 2.28 16 41 H 0.06 1.81 7.99 -2.39 -0.02 1.79 16 42 H 0.04 1.18 6.38 -2.39 -0.02 1.16 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.37 15.06 3.96 -92.71 -0.37 14.69 16 46 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.07 2.41 5.58 -2.38 -0.01 2.39 16 48 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.29 382.65 3.26 -68.03 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.55 Total: 31.55 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 7.21 Total: 13.21 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.84 Total: -126.47 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.57 Total: -31.91 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.90 Total: 45.59 kcal Total: -71.29 3.26 -68.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054930828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.149 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds