Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 O 1.42897 * 109.47162 * 120.00321 * 2 1 3 5 5 C 1.35664 * 117.00448 * 155.23494 * 4 2 1 6 6 C 1.38945 * 120.57460 * 5.99568 * 5 4 2 7 7 N 1.31629 * 120.79058 * 180.26741 * 6 5 4 8 8 C 1.31901 * 122.14993 * 359.73393 * 7 6 5 9 9 C 1.37973 * 121.07027 * 0.02770 * 8 7 6 10 10 C 1.39942 * 119.06998 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.96302 * 179.97438 * 10 9 8 12 12 O 1.21549 * 120.00252 * 144.35193 * 11 10 9 13 13 N 1.34782 * 119.99713 * 324.35429 * 11 10 9 14 14 C 1.47020 * 125.64711 * 174.96825 * 13 11 10 15 15 C 1.54321 * 107.27225 * 178.97504 * 14 13 11 16 16 H 1.09002 * 110.71936 * 96.16823 * 15 14 13 17 17 C 1.52996 * 110.87430 * 219.37538 * 15 14 13 18 18 C 1.55161 * 102.94249 * 337.80792 * 15 14 13 19 19 H 1.08998 * 111.00313 * 153.61170 * 18 15 14 20 20 N 1.46492 * 111.00440 * 277.42870 * 18 15 14 21 21 C 1.36936 * 119.99844 * 201.82115 * 20 18 15 22 22 H 1.08007 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99988 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99945 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99685 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46792 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.47252 * 299.99879 * 25 23 21 28 28 H 1.48497 * 109.47122 * 60.00258 * 25 23 21 29 29 C 1.47524 * 125.63605 * 355.00914 * 13 11 10 30 30 H 1.08999 * 109.46991 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47086 * 59.99769 * 1 2 3 32 32 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46991 * 240.00060 * 2 1 3 34 34 H 1.08996 * 109.47444 * 300.00011 * 3 2 1 35 35 H 1.08999 * 109.47254 * 60.00222 * 3 2 1 36 36 H 1.09004 * 109.46593 * 179.97438 * 3 2 1 37 37 H 1.07999 * 119.60852 * 0.02562 * 6 5 4 38 38 H 1.07998 * 119.46827 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.45758 * 179.97438 * 9 8 7 40 40 H 1.09008 * 109.88190 * 59.56201 * 14 13 11 41 41 H 1.08995 * 110.01628 * 298.46710 * 14 13 11 42 42 H 1.09001 * 109.47528 * 173.61115 * 17 15 14 43 43 H 1.08999 * 109.47061 * 293.60918 * 17 15 14 44 44 H 1.08995 * 109.47440 * 53.61337 * 17 15 14 45 45 H 0.97000 * 120.00594 * 21.81437 * 20 18 15 46 46 H 0.96996 * 119.99904 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.36976 * 85.27655 * 29 13 11 48 48 H 1.09000 * 110.41298 * 322.91978 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2465 -1.2196 1.0996 6 6 4.0510 -1.0115 -0.0139 7 7 5.2529 -1.5435 -0.0858 8 6 5.7507 -2.2866 0.8837 9 6 5.0250 -2.5425 2.0289 10 6 3.7411 -2.0005 2.1557 11 6 2.9267 -2.2484 3.3644 12 8 2.1968 -1.3769 3.7948 13 7 2.9936 -3.4408 3.9892 14 6 2.3232 -3.7856 5.2514 15 6 2.6650 -5.2575 5.5645 16 1 3.5093 -5.3197 6.2512 17 6 1.4495 -5.9897 6.1365 18 6 3.0458 -5.8294 4.1733 19 1 3.7290 -6.6730 4.2714 20 7 1.8503 -6.2106 3.4172 21 6 1.9462 -7.1187 2.3968 22 1 2.9033 -7.5537 2.1492 23 6 0.8134 -7.4803 1.6807 24 7 -0.3530 -6.9506 1.9828 25 14 0.9444 -8.7186 0.2882 26 1 -0.3968 -8.9315 -0.3127 27 1 1.8741 -8.2017 -0.7480 28 1 1.4602 -10.0064 0.8179 29 6 3.7525 -4.6156 3.5199 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.6844 -0.4093 -0.8320 38 1 6.7423 -2.7014 0.7794 39 1 5.4421 -3.1527 2.8164 40 1 1.2447 -3.6708 5.1418 41 1 2.6846 -3.1424 6.0536 42 1 1.6805 -7.0496 6.2429 43 1 1.2001 -5.5726 7.1122 44 1 0.6018 -5.8686 5.4621 45 1 0.9908 -5.8198 3.6394 46 1 -1.1445 -7.2030 1.4821 47 1 4.7887 -4.5556 3.8527 48 1 3.7058 -4.6892 2.4334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054930830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -16.414686 kcal Electronic energy + Delta-G solvation = -29994.066406 eV Core-core repulsion = 26050.045451 eV Total energy + Delta-G solvation = -3944.020955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99322 -39.51269 -38.40843 -37.42618 -33.92670 -33.58149 -32.82787 -31.68765 -30.48035 -30.23128 -27.82667 -27.43085 -26.45534 -24.61178 -23.81065 -23.54098 -22.00566 -21.23118 -19.84704 -19.26364 -18.04235 -17.64593 -17.06658 -16.74058 -16.07096 -15.56935 -15.47326 -14.83057 -14.73701 -14.38808 -14.32530 -14.08113 -13.78875 -13.53500 -13.25941 -13.08133 -12.93227 -12.79382 -12.54559 -12.43562 -12.23459 -12.11983 -11.95927 -11.83307 -11.55482 -11.18155 -11.13365 -10.96994 -10.93687 -10.74688 -10.51521 -10.32822 -10.04492 -9.91884 -9.70098 -9.63332 -9.33862 -9.03002 -8.46987 -8.21221 -7.04751 -5.84103 -3.14094 0.84416 1.12632 2.99907 3.03376 3.29316 3.38749 3.43663 3.44652 3.83812 4.35247 4.48760 4.51379 4.59700 4.68852 4.73211 4.85541 4.91499 5.00347 5.14267 5.17774 5.31046 5.36948 5.38524 5.52735 5.54772 5.59640 5.63785 5.67611 5.70394 5.75309 5.88682 5.91332 5.95299 5.97819 6.09807 6.15237 6.20398 6.32770 6.35529 6.42743 6.49125 6.60412 6.75858 6.91480 7.24582 7.61740 7.84665 7.86652 8.33380 8.47402 9.45290 10.00622 10.35103 11.37779 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.004372 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.972710 B = 6402.537620 C = 7246.213065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 C -0.180 4.180 4 O -0.277 6.277 5 C 0.135 3.865 6 C 0.009 3.991 7 N -0.437 5.437 8 C 0.049 3.951 9 C -0.099 4.099 10 C -0.112 4.112 11 C 0.578 3.422 12 O -0.529 6.529 13 N -0.597 5.597 14 C 0.118 3.882 15 C -0.114 4.114 16 H 0.080 0.920 17 C -0.131 4.131 18 C 0.172 3.828 19 H 0.074 0.926 20 N -0.708 5.708 21 C -0.248 4.248 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.285 1.285 29 C 0.065 3.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.057 0.943 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 11.741 0.454 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.237 4.237 4 O -0.187 6.187 5 C 0.084 3.916 6 C -0.150 4.150 7 N -0.147 5.147 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.365 3.635 12 O -0.407 6.407 13 N -0.329 5.329 14 C -0.004 4.004 15 C -0.134 4.134 16 H 0.098 0.902 17 C -0.189 4.189 18 C 0.059 3.941 19 H 0.091 0.909 20 N -0.348 5.348 21 C -0.379 4.379 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.575 5.575 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.211 1.211 29 C -0.061 4.061 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.223 0.777 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.910 12.292 -0.049 15.182 hybrid contribution -0.636 -0.673 -0.335 0.985 sum 8.273 11.619 -0.384 14.269 Atomic orbital electron populations 1.21841 0.91879 1.03843 1.03003 1.22585 0.96255 0.92613 0.87100 1.22401 1.01921 0.95933 1.03449 1.86341 1.27477 1.66767 1.38161 1.20043 0.86057 0.91529 0.93950 1.22938 0.91318 1.03260 0.97514 1.67319 1.12177 1.06307 1.28910 1.22518 1.00668 0.97827 0.89678 1.22420 0.92849 0.97145 0.99484 1.19724 0.96181 1.00939 0.95537 1.17459 0.81876 0.81510 0.82622 1.90773 1.39430 1.44400 1.66052 1.48185 1.49334 1.11363 1.24046 1.21952 0.98041 0.95505 0.84893 1.22521 0.99272 0.93444 0.98139 0.90181 1.21590 0.97730 1.00026 0.99532 1.21370 0.90688 0.93072 0.88985 0.90862 1.42361 1.04802 1.50004 1.37660 1.19171 0.94131 1.16397 1.08188 0.91079 1.24741 0.95464 1.00311 0.99821 1.69650 0.98448 1.46409 1.42977 0.86305 0.76611 0.81239 0.82228 1.21694 1.21271 1.21123 1.23623 0.94050 0.87064 1.01387 0.91183 0.90455 0.91160 0.90798 0.90764 0.91074 0.91967 0.82017 0.82068 0.83337 0.91328 0.92224 0.92100 0.93714 0.91250 0.77714 0.93340 0.92531 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 37.16 0.36 -1.32 16 2 C 0.07 0.85 2.85 -26.73 -0.08 0.78 16 3 C -0.18 -1.74 9.17 37.16 0.34 -1.40 16 4 O -0.28 -4.64 8.61 -34.57 -0.30 -4.94 16 5 C 0.13 2.20 6.60 -38.53 -0.25 1.95 16 6 C 0.01 0.13 9.42 -17.38 -0.16 -0.04 16 7 N -0.44 -6.21 10.32 -13.17 -0.14 -6.34 16 8 C 0.05 0.63 11.16 -17.62 -0.20 0.43 16 9 C -0.10 -1.35 8.27 -39.04 -0.32 -1.67 16 10 C -0.11 -1.91 5.46 -104.54 -0.57 -2.48 16 11 C 0.58 11.16 7.42 -12.33 -0.09 11.07 16 12 O -0.53 -11.73 16.43 -10.56 -0.17 -11.90 16 13 N -0.60 -10.58 3.33 -171.55 -0.57 -11.15 16 14 C 0.12 1.96 6.46 -3.07 -0.02 1.94 16 15 C -0.11 -1.72 3.41 -88.79 -0.30 -2.02 16 16 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.13 -2.05 8.73 37.16 0.32 -1.72 16 18 C 0.17 3.07 3.45 -65.78 -0.23 2.84 16 19 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 20 N -0.71 -16.51 4.67 -51.35 -0.24 -16.75 16 21 C -0.25 -6.48 9.97 -15.06 -0.15 -6.63 16 22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 25 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 C 0.06 1.06 4.92 -2.47 -0.01 1.05 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.80 6.38 -51.93 -0.33 0.47 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.60 6.87 -51.93 -0.36 0.25 16 37 H 0.16 1.83 5.43 -52.49 -0.29 1.55 16 38 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.15 1.70 5.78 -52.49 -0.30 1.39 16 40 H 0.07 1.28 7.78 -51.92 -0.40 0.87 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 45 H 0.39 9.92 6.23 -40.82 -0.25 9.67 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.06 0.73 6.95 -51.93 -0.36 0.37 16 48 H 0.08 1.52 7.24 -51.93 -0.38 1.14 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -33.25 384.31 -8.59 -41.84 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.20 Total: 10.81 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.46 Total: 2.51 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.22 Total: -60.88 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.47 Total: -16.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.25 -8.59 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054930830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.422 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds