Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 O 1.42897 * 109.47162 * 120.00321 * 2 1 3 5 5 C 1.35664 * 117.00448 * 155.23494 * 4 2 1 6 6 C 1.38945 * 120.57460 * 5.99568 * 5 4 2 7 7 N 1.31629 * 120.79058 * 180.26741 * 6 5 4 8 8 C 1.31901 * 122.14993 * 359.73393 * 7 6 5 9 9 C 1.37973 * 121.07027 * 0.02770 * 8 7 6 10 10 C 1.39942 * 119.06998 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.96302 * 179.97438 * 10 9 8 12 12 O 1.21549 * 120.00252 * 144.35193 * 11 10 9 13 13 N 1.34782 * 119.99713 * 324.35429 * 11 10 9 14 14 C 1.47020 * 125.64711 * 174.96825 * 13 11 10 15 15 C 1.54321 * 107.27225 * 178.97504 * 14 13 11 16 16 H 1.09002 * 110.71936 * 96.16823 * 15 14 13 17 17 C 1.52996 * 110.87430 * 219.37538 * 15 14 13 18 18 C 1.55161 * 102.94249 * 337.80792 * 15 14 13 19 19 H 1.08998 * 111.00313 * 153.61170 * 18 15 14 20 20 N 1.46492 * 111.00440 * 277.42870 * 18 15 14 21 21 C 1.36936 * 119.99844 * 201.82115 * 20 18 15 22 22 H 1.08007 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99988 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99945 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99685 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46792 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.47252 * 299.99879 * 25 23 21 28 28 H 1.48497 * 109.47122 * 60.00258 * 25 23 21 29 29 C 1.47524 * 125.63605 * 355.00914 * 13 11 10 30 30 H 1.08999 * 109.46991 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47086 * 59.99769 * 1 2 3 32 32 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46991 * 240.00060 * 2 1 3 34 34 H 1.08996 * 109.47444 * 300.00011 * 3 2 1 35 35 H 1.08999 * 109.47254 * 60.00222 * 3 2 1 36 36 H 1.09004 * 109.46593 * 179.97438 * 3 2 1 37 37 H 1.07999 * 119.60852 * 0.02562 * 6 5 4 38 38 H 1.07998 * 119.46827 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.45758 * 179.97438 * 9 8 7 40 40 H 1.09008 * 109.88190 * 59.56201 * 14 13 11 41 41 H 1.08995 * 110.01628 * 298.46710 * 14 13 11 42 42 H 1.09001 * 109.47528 * 173.61115 * 17 15 14 43 43 H 1.08999 * 109.47061 * 293.60918 * 17 15 14 44 44 H 1.08995 * 109.47440 * 53.61337 * 17 15 14 45 45 H 0.97000 * 120.00594 * 21.81437 * 20 18 15 46 46 H 0.96996 * 119.99904 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.36976 * 85.27655 * 29 13 11 48 48 H 1.09000 * 110.41298 * 322.91978 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2465 -1.2196 1.0996 6 6 4.0510 -1.0115 -0.0139 7 7 5.2529 -1.5435 -0.0858 8 6 5.7507 -2.2866 0.8837 9 6 5.0250 -2.5425 2.0289 10 6 3.7411 -2.0005 2.1557 11 6 2.9267 -2.2484 3.3644 12 8 2.1968 -1.3769 3.7948 13 7 2.9936 -3.4408 3.9892 14 6 2.3232 -3.7856 5.2514 15 6 2.6650 -5.2575 5.5645 16 1 3.5093 -5.3197 6.2512 17 6 1.4495 -5.9897 6.1365 18 6 3.0458 -5.8294 4.1733 19 1 3.7290 -6.6730 4.2714 20 7 1.8503 -6.2106 3.4172 21 6 1.9462 -7.1187 2.3968 22 1 2.9033 -7.5537 2.1492 23 6 0.8134 -7.4803 1.6807 24 7 -0.3530 -6.9506 1.9828 25 14 0.9444 -8.7186 0.2882 26 1 -0.3968 -8.9315 -0.3127 27 1 1.8741 -8.2017 -0.7480 28 1 1.4602 -10.0064 0.8179 29 6 3.7525 -4.6156 3.5199 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.6844 -0.4093 -0.8320 38 1 6.7423 -2.7014 0.7794 39 1 5.4421 -3.1527 2.8164 40 1 1.2447 -3.6708 5.1418 41 1 2.6846 -3.1424 6.0536 42 1 1.6805 -7.0496 6.2429 43 1 1.2001 -5.5726 7.1122 44 1 0.6018 -5.8686 5.4621 45 1 0.9908 -5.8198 3.6394 46 1 -1.1445 -7.2030 1.4821 47 1 4.7887 -4.5556 3.8527 48 1 3.7058 -4.6892 2.4334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054930830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -38.001160 kcal Electronic energy + Delta-G solvation = -29995.002466 eV Core-core repulsion = 26050.045451 eV Total energy + Delta-G solvation = -3944.957015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14677 -40.84903 -39.48540 -38.90513 -35.69433 -34.64724 -34.16772 -32.99508 -32.16738 -31.30603 -29.40313 -28.30202 -27.76656 -25.97401 -25.50694 -24.65668 -23.37204 -22.23493 -21.13032 -20.66840 -19.45332 -19.09357 -18.46750 -17.92410 -17.47728 -16.83388 -16.69000 -16.40465 -15.86192 -15.81613 -15.62584 -15.28881 -15.20769 -14.83864 -14.59010 -14.47167 -14.12509 -14.05548 -13.65630 -13.54547 -13.41626 -13.40226 -13.06968 -13.01927 -12.89550 -12.79510 -12.75615 -12.27870 -12.20978 -12.10580 -11.99731 -11.91693 -11.49216 -11.42725 -11.30171 -11.00137 -10.77506 -10.50607 -9.74378 -9.50376 -8.95097 -7.92503 -5.20329 -0.31887 0.05310 1.47099 1.49039 1.54674 1.62442 1.97757 2.01483 2.56441 2.71524 3.27101 3.37284 3.39047 3.55248 3.67223 3.70820 3.81451 3.86989 3.92992 3.94935 4.02491 4.09525 4.14050 4.38381 4.41083 4.58260 4.61980 4.64900 4.66272 4.71732 4.73271 4.75407 4.78640 4.85517 4.87294 4.96096 5.00457 5.13151 5.18691 5.20704 5.24764 5.40003 5.43843 5.53100 5.60016 6.19350 6.28324 6.46293 6.78895 7.03872 7.35436 8.11898 8.33197 9.30935 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.004372 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.972710 B = 6402.537620 C = 7246.213065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 C -0.171 4.171 4 O -0.312 6.312 5 C 0.113 3.887 6 C 0.012 3.988 7 N -0.447 5.447 8 C 0.054 3.946 9 C -0.091 4.091 10 C -0.145 4.145 11 C 0.569 3.431 12 O -0.573 6.573 13 N -0.598 5.598 14 C 0.115 3.885 15 C -0.097 4.097 16 H 0.125 0.875 17 C -0.126 4.126 18 C 0.158 3.842 19 H 0.093 0.907 20 N -0.722 5.722 21 C -0.233 4.233 22 H 0.085 0.915 23 C -0.075 4.075 24 N -0.972 5.972 25 Si 0.966 3.034 26 H -0.304 1.304 27 H -0.281 1.281 28 H -0.273 1.273 29 C 0.074 3.926 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.185 0.815 38 H 0.202 0.798 39 H 0.173 0.827 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.028 0.972 45 H 0.371 0.629 46 H 0.247 0.753 47 H 0.108 0.892 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 11.498 0.217 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 C -0.228 4.228 4 O -0.224 6.224 5 C 0.063 3.937 6 C -0.147 4.147 7 N -0.156 5.156 8 C -0.101 4.101 9 C -0.111 4.111 10 C -0.156 4.156 11 C 0.358 3.642 12 O -0.454 6.454 13 N -0.330 5.330 14 C -0.007 4.007 15 C -0.116 4.116 16 H 0.143 0.857 17 C -0.184 4.184 18 C 0.047 3.953 19 H 0.111 0.889 20 N -0.361 5.361 21 C -0.365 4.365 22 H 0.103 0.897 23 C -0.267 4.267 24 N -0.623 5.623 25 Si 0.796 3.204 26 H -0.231 1.231 27 H -0.207 1.207 28 H -0.199 1.199 29 C -0.051 4.051 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.202 0.798 38 H 0.219 0.781 39 H 0.190 0.810 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.126 0.874 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.456 12.030 -0.270 17.319 hybrid contribution -1.649 -0.571 -0.198 1.757 sum 10.807 11.458 -0.469 15.758 Atomic orbital electron populations 1.21885 0.91779 1.02520 1.04211 1.22933 0.96468 0.93912 0.86321 1.22346 1.01867 0.94235 1.04344 1.86308 1.28086 1.67469 1.40497 1.20334 0.86430 0.92105 0.94809 1.23231 0.91048 1.03117 0.97274 1.67419 1.12044 1.06678 1.29499 1.23177 1.01826 0.96558 0.88584 1.22687 0.91376 0.96542 1.00469 1.19879 0.97645 1.02969 0.95150 1.17954 0.81672 0.81425 0.83129 1.90729 1.41427 1.45844 1.67353 1.48312 1.49183 1.11279 1.24182 1.22039 0.96249 0.97153 0.85246 1.22520 1.00357 0.91474 0.97254 0.85658 1.21521 0.96609 1.00331 0.99937 1.21747 0.89225 0.94316 0.89978 0.88917 1.42563 1.06049 1.49694 1.37808 1.19640 0.94182 1.15143 1.07511 0.89671 1.25495 0.95468 1.02958 1.02805 1.69830 0.99004 1.48817 1.44602 0.85322 0.75800 0.79652 0.79667 1.23080 1.20749 1.19881 1.23581 0.96166 0.85434 0.99934 0.92239 0.86929 0.93683 0.89581 0.87692 0.92256 0.91914 0.79834 0.78123 0.80950 0.94703 0.90182 0.92117 0.91097 0.95311 0.79605 0.94436 0.87434 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.56 71.98 0.69 -2.74 16 2 C 0.06 1.44 2.85 30.60 0.09 1.53 16 3 C -0.17 -3.17 9.17 71.98 0.66 -2.51 16 4 O -0.31 -10.97 8.61 -74.62 -0.64 -11.61 16 5 C 0.11 3.76 6.60 22.95 0.15 3.91 16 6 C 0.01 0.33 9.42 84.89 0.80 1.13 16 7 N -0.45 -11.66 10.32 -195.58 -2.02 -13.68 16 8 C 0.05 1.21 11.16 84.62 0.94 2.15 16 9 C -0.09 -2.27 8.27 22.62 0.19 -2.08 16 10 C -0.15 -4.91 5.46 -19.81 -0.11 -5.02 16 11 C 0.57 22.45 7.42 86.79 0.64 23.09 16 12 O -0.57 -26.68 16.43 11.31 0.19 -26.49 16 13 N -0.60 -20.87 3.33 -814.93 -2.71 -23.58 16 14 C 0.12 3.76 6.46 86.73 0.56 4.32 16 15 C -0.10 -2.69 3.41 -9.61 -0.03 -2.72 16 16 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.13 -3.83 8.73 71.98 0.63 -3.21 16 18 C 0.16 5.30 3.45 46.39 0.16 5.46 16 19 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 20 N -0.72 -33.84 4.67 -316.37 -1.48 -35.31 16 21 C -0.23 -12.11 9.97 84.04 0.84 -11.27 16 22 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 24 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 25 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 C 0.07 2.23 4.92 86.84 0.43 2.66 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.84 6.38 -2.39 -0.02 1.82 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.15 6.87 -2.39 -0.02 1.14 16 37 H 0.18 3.90 5.43 -2.91 -0.02 3.89 16 38 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.17 3.26 5.78 -2.91 -0.02 3.25 16 40 H 0.03 1.36 7.78 -2.38 -0.02 1.34 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.03 1.10 6.43 -2.39 -0.02 1.08 16 45 H 0.37 19.78 6.23 -92.71 -0.58 19.21 16 46 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.11 2.22 6.95 -2.39 -0.02 2.21 16 48 H 0.06 2.08 7.24 -2.39 -0.02 2.06 16 Total: -1.00 -77.49 384.31 3.15 -74.34 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: 0.40 Total: 37.35 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 7.10 Total: 10.95 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -5.93 Total: -131.93 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.46 Total: -38.10 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.49 3.15 -74.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054930830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.344 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds