Wall clock time and date at job start Tue Mar 31 2020 17:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46682 * 2 1 4 4 O 1.42897 * 109.47440 * 240.00133 * 2 1 3 5 5 C 1.35671 * 116.99675 * 275.00120 * 4 2 1 6 6 C 1.38939 * 120.58065 * 6.43788 * 5 4 2 7 7 N 1.31624 * 120.79212 * 180.02562 * 6 5 4 8 8 C 1.31904 * 122.14889 * 359.96475 * 7 6 5 9 9 C 1.37967 * 121.07543 * 359.97438 * 8 7 6 10 10 C 1.39954 * 119.06846 * 359.78497 * 9 8 7 11 11 C 1.47831 * 120.96376 * 180.25846 * 10 9 8 12 12 O 1.21559 * 119.99746 * 224.73489 * 11 10 9 13 13 N 1.34772 * 120.00244 * 44.73679 * 11 10 9 14 14 C 1.47426 * 125.65204 * 175.41264 * 13 11 10 15 15 C 1.54906 * 104.83270 * 204.09279 * 14 13 11 16 16 H 1.08998 * 111.01236 * 81.05746 * 15 14 13 17 17 C 1.52999 * 111.00450 * 204.87584 * 15 14 13 18 18 C 1.55155 * 101.58020 * 322.98550 * 15 14 13 19 19 H 1.09003 * 110.72218 * 276.96369 * 18 15 14 20 20 N 1.46498 * 110.72349 * 153.86897 * 18 15 14 21 21 C 1.36941 * 120.00213 * 154.99972 * 20 18 15 22 22 H 1.07992 * 119.99867 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99767 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99750 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00179 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47401 * 90.00080 * 25 23 21 27 27 H 1.48506 * 109.47244 * 210.00177 * 25 23 21 28 28 H 1.48510 * 109.47285 * 329.99839 * 25 23 21 29 29 C 1.47027 * 125.64608 * 355.09670 * 13 11 10 30 30 H 1.09002 * 109.46639 * 60.00391 * 1 2 3 31 31 H 1.09005 * 109.46654 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47091 * 300.00114 * 1 2 3 33 33 H 1.09002 * 109.46639 * 119.99609 * 2 1 3 34 34 H 1.08992 * 109.47267 * 300.00011 * 3 2 1 35 35 H 1.09002 * 109.46793 * 59.99986 * 3 2 1 36 36 H 1.09003 * 109.46765 * 179.97438 * 3 2 1 37 37 H 1.08002 * 119.60629 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.46372 * 180.02562 * 8 7 6 39 39 H 1.08000 * 120.46560 * 180.02562 * 9 8 7 40 40 H 1.09002 * 110.36273 * 322.92468 * 14 13 11 41 41 H 1.08993 * 110.37223 * 85.13866 * 14 13 11 42 42 H 1.09005 * 109.47027 * 58.53827 * 17 15 14 43 43 H 1.09001 * 109.47564 * 178.54182 * 17 15 14 44 44 H 1.09000 * 109.46924 * 298.54530 * 17 15 14 45 45 H 0.97000 * 120.00015 * 334.99817 * 20 18 15 46 46 H 0.97001 * 120.00052 * 179.97438 * 24 23 21 47 47 H 1.08995 * 109.88061 * 298.39764 * 29 13 11 48 48 H 1.09002 * 109.88141 * 59.56549 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.1124 -2.0244 -1.0979 6 6 1.6442 -2.7144 0.0134 7 7 1.7454 -4.0248 0.0848 8 6 2.2879 -4.7406 -0.8812 9 6 2.7786 -4.1406 -2.0226 10 6 2.6910 -2.7497 -2.1510 11 6 3.1982 -2.0639 -3.3584 12 8 3.8628 -1.0521 -3.2486 13 7 2.9237 -2.5605 -4.5809 14 6 3.2823 -1.9306 -5.8646 15 6 2.2646 -2.5006 -6.8840 16 1 1.3151 -1.9684 -6.8275 17 6 2.8298 -2.4584 -8.3052 18 6 2.1129 -3.9629 -6.3882 19 1 2.9178 -4.5872 -6.7762 20 7 0.8075 -4.5070 -6.7701 21 6 0.6425 -5.8596 -6.9060 22 1 1.4750 -6.5252 -6.7320 23 6 -0.5944 -6.3751 -7.2684 24 7 -0.7530 -7.6751 -7.3985 25 14 -2.0340 -5.2237 -7.5701 26 1 -2.0584 -4.8259 -9.0006 27 1 -3.3021 -5.9163 -7.2272 28 1 -1.8861 -4.0134 -6.7222 29 6 2.2227 -3.8235 -4.8550 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6765 1.9563 0.8900 36 1 3.1300 1.4426 0.0005 37 1 1.1926 -2.1690 0.8289 38 1 2.3483 -5.8139 -0.7774 39 1 3.2205 -4.7362 -2.8077 40 1 3.1841 -0.8472 -5.7960 41 1 4.2990 -2.2013 -6.1492 42 1 3.7555 -3.0325 -8.3452 43 1 2.1055 -2.8881 -8.9972 44 1 3.0311 -1.4245 -8.5855 45 1 0.0598 -3.9091 -6.9268 46 1 -1.6174 -8.0354 -7.6514 47 1 2.7897 -4.6588 -4.4445 48 1 1.2258 -3.7973 -4.4148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054930831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:54 Heat of formation + Delta-G solvation = -15.378341 kcal Electronic energy + Delta-G solvation = -29507.757895 eV Core-core repulsion = 25563.781879 eV Total energy + Delta-G solvation = -3943.976016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.14642 -39.68450 -38.56030 -37.59350 -34.26754 -33.77438 -33.01285 -31.87669 -31.05973 -30.36031 -28.02028 -27.61995 -26.69852 -24.78679 -23.83844 -23.51909 -21.67121 -21.26254 -20.25343 -19.94457 -18.22850 -17.65390 -17.41186 -17.03602 -16.05410 -15.89897 -15.68987 -15.01446 -14.81108 -14.65860 -14.40901 -14.19496 -13.96077 -13.48964 -13.37229 -13.32004 -13.23492 -12.85008 -12.69311 -12.62046 -12.50341 -12.38632 -12.26716 -11.96378 -11.74134 -11.47140 -11.35894 -11.21408 -11.15279 -10.85823 -10.69159 -10.43644 -10.21888 -10.03967 -9.81975 -9.70078 -9.47697 -9.06405 -8.61324 -8.43576 -7.45109 -5.89202 -3.27238 0.74002 1.00153 2.75477 2.82797 3.05705 3.29597 3.32526 3.38644 3.66722 4.23953 4.32061 4.40501 4.48284 4.51880 4.60730 4.71532 4.73098 4.86431 4.98401 4.99865 5.02991 5.21289 5.27850 5.38087 5.39633 5.43835 5.46287 5.48376 5.57303 5.64133 5.66446 5.74194 5.77811 5.82122 5.84421 5.85579 6.03256 6.07539 6.21797 6.30772 6.34109 6.41382 6.45454 6.69151 7.05063 7.61852 7.75512 7.84514 8.21632 8.29368 9.05557 9.78089 9.95999 11.28330 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.003637 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.960109 B = 7697.800926 C = 8442.858219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.285 6.285 5 C 0.127 3.873 6 C 0.011 3.989 7 N -0.437 5.437 8 C 0.058 3.942 9 C -0.098 4.098 10 C -0.115 4.115 11 C 0.580 3.420 12 O -0.530 6.530 13 N -0.608 5.608 14 C 0.117 3.883 15 C -0.118 4.118 16 H 0.081 0.919 17 C -0.133 4.133 18 C 0.183 3.817 19 H 0.079 0.921 20 N -0.735 5.735 21 C -0.254 4.254 22 H 0.093 0.907 23 C 0.012 3.988 24 N -0.928 5.928 25 Si 0.881 3.119 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.069 3.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.364 0.636 46 H 0.261 0.739 47 H 0.067 0.933 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 14.349 12.765 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.196 6.196 5 C 0.077 3.923 6 C -0.148 4.148 7 N -0.146 5.146 8 C -0.099 4.099 9 C -0.118 4.118 10 C -0.127 4.127 11 C 0.367 3.633 12 O -0.407 6.407 13 N -0.341 5.341 14 C -0.006 4.006 15 C -0.138 4.138 16 H 0.099 0.901 17 C -0.191 4.191 18 C 0.071 3.929 19 H 0.097 0.903 20 N -0.376 5.376 21 C -0.383 4.383 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.204 1.204 29 C -0.057 4.057 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.197 0.803 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.490 14.371 13.420 20.706 hybrid contribution -1.080 0.920 -0.687 1.576 sum 5.410 15.291 12.733 20.621 Atomic orbital electron populations 1.22431 0.94706 1.03345 1.03548 1.22571 0.94539 0.94204 0.87056 1.21829 1.02433 0.93047 1.03075 1.86258 1.79866 1.14988 1.38515 1.19983 0.94082 0.84177 0.94057 1.22950 1.03277 0.91093 0.97504 1.67358 1.11460 1.06721 1.29097 1.22614 0.97037 1.00679 0.89528 1.22475 0.97263 0.92606 0.99466 1.19678 1.04011 0.93620 0.95375 1.17516 0.80183 0.83786 0.81781 1.90775 1.38984 1.24836 1.86087 1.48396 1.57038 1.23920 1.04787 1.22264 0.98380 0.98065 0.81889 1.22698 0.98557 0.97829 0.94765 0.90091 1.21610 1.01334 1.01055 0.95116 1.21232 0.90211 0.91935 0.89519 0.90279 1.42717 1.06867 1.05245 1.82739 1.19061 0.97390 0.81362 1.40505 0.88914 1.24661 0.97304 0.95421 1.01094 1.69689 1.24118 1.10139 1.53479 0.86613 0.83446 0.80547 0.78263 1.20885 1.21616 1.20352 1.23466 0.96766 0.83903 1.01557 0.91120 0.91729 0.90628 0.90727 0.91281 0.90414 0.91380 0.82007 0.81690 0.83005 0.90810 0.91208 0.92394 0.91483 0.93035 0.80262 0.92864 0.91505 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.17 37.16 0.34 -1.17 16 2 C 0.07 0.69 2.85 -26.73 -0.08 0.61 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 4 O -0.29 -3.98 8.86 -29.15 -0.26 -4.24 16 5 C 0.13 1.81 6.61 -38.53 -0.25 1.55 16 6 C 0.01 0.14 9.43 -17.38 -0.16 -0.02 16 7 N -0.44 -5.86 10.32 -13.17 -0.14 -6.00 16 8 C 0.06 0.72 11.16 -17.62 -0.20 0.52 16 9 C -0.10 -1.30 8.64 -39.04 -0.34 -1.63 16 10 C -0.12 -1.76 5.50 -104.54 -0.57 -2.33 16 11 C 0.58 9.81 7.27 -12.34 -0.09 9.72 16 12 O -0.53 -10.28 16.74 -5.12 -0.09 -10.37 16 13 N -0.61 -9.54 3.33 -171.63 -0.57 -10.11 16 14 C 0.12 1.65 6.35 -2.53 -0.02 1.63 16 15 C -0.12 -1.71 3.27 -88.47 -0.29 -2.00 16 16 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 17 C -0.13 -1.70 9.30 37.16 0.35 -1.35 16 18 C 0.18 3.15 3.08 -66.09 -0.20 2.94 16 19 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 20 N -0.73 -15.79 4.96 -51.65 -0.26 -16.04 16 21 C -0.25 -6.58 10.44 -15.06 -0.16 -6.74 16 22 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 25 Si 0.88 21.10 27.73 -169.99 -4.71 16.39 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 29 C 0.07 1.11 5.35 -3.06 -0.02 1.09 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.57 6.86 -51.93 -0.36 0.22 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.60 6.38 -51.93 -0.33 0.27 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.16 1.57 5.43 -52.49 -0.28 1.29 16 38 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.15 1.80 5.75 -52.49 -0.30 1.50 16 40 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.36 7.86 5.62 -40.82 -0.23 7.63 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.07 1.00 5.92 -51.93 -0.31 0.69 16 48 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -32.76 385.74 -8.15 -40.91 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.29 Total: 8.41 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.43 Total: 2.22 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.19 Total: -59.14 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.34 Total: -14.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.76 -8.15 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054930831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.530 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds