Wall clock time and date at job start Tue Mar 31 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46682 * 2 1 4 4 O 1.42897 * 109.47440 * 240.00133 * 2 1 3 5 5 C 1.35671 * 116.99675 * 275.00120 * 4 2 1 6 6 C 1.38939 * 120.58065 * 6.43788 * 5 4 2 7 7 N 1.31624 * 120.79212 * 180.02562 * 6 5 4 8 8 C 1.31904 * 122.14889 * 359.96475 * 7 6 5 9 9 C 1.37967 * 121.07543 * 359.97438 * 8 7 6 10 10 C 1.39954 * 119.06846 * 359.78497 * 9 8 7 11 11 C 1.47831 * 120.96376 * 180.25846 * 10 9 8 12 12 O 1.21559 * 119.99746 * 224.73489 * 11 10 9 13 13 N 1.34772 * 120.00244 * 44.73679 * 11 10 9 14 14 C 1.47426 * 125.65204 * 175.41264 * 13 11 10 15 15 C 1.54906 * 104.83270 * 204.09279 * 14 13 11 16 16 H 1.08998 * 111.01236 * 81.05746 * 15 14 13 17 17 C 1.52999 * 111.00450 * 204.87584 * 15 14 13 18 18 C 1.55155 * 101.58020 * 322.98550 * 15 14 13 19 19 H 1.09003 * 110.72218 * 276.96369 * 18 15 14 20 20 N 1.46498 * 110.72349 * 153.86897 * 18 15 14 21 21 C 1.36941 * 120.00213 * 154.99972 * 20 18 15 22 22 H 1.07992 * 119.99867 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99767 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99750 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00179 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47401 * 90.00080 * 25 23 21 27 27 H 1.48506 * 109.47244 * 210.00177 * 25 23 21 28 28 H 1.48510 * 109.47285 * 329.99839 * 25 23 21 29 29 C 1.47027 * 125.64608 * 355.09670 * 13 11 10 30 30 H 1.09002 * 109.46639 * 60.00391 * 1 2 3 31 31 H 1.09005 * 109.46654 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47091 * 300.00114 * 1 2 3 33 33 H 1.09002 * 109.46639 * 119.99609 * 2 1 3 34 34 H 1.08992 * 109.47267 * 300.00011 * 3 2 1 35 35 H 1.09002 * 109.46793 * 59.99986 * 3 2 1 36 36 H 1.09003 * 109.46765 * 179.97438 * 3 2 1 37 37 H 1.08002 * 119.60629 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.46372 * 180.02562 * 8 7 6 39 39 H 1.08000 * 120.46560 * 180.02562 * 9 8 7 40 40 H 1.09002 * 110.36273 * 322.92468 * 14 13 11 41 41 H 1.08993 * 110.37223 * 85.13866 * 14 13 11 42 42 H 1.09005 * 109.47027 * 58.53827 * 17 15 14 43 43 H 1.09001 * 109.47564 * 178.54182 * 17 15 14 44 44 H 1.09000 * 109.46924 * 298.54530 * 17 15 14 45 45 H 0.97000 * 120.00015 * 334.99817 * 20 18 15 46 46 H 0.97001 * 120.00052 * 179.97438 * 24 23 21 47 47 H 1.08995 * 109.88061 * 298.39764 * 29 13 11 48 48 H 1.09002 * 109.88141 * 59.56549 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.1124 -2.0244 -1.0979 6 6 1.6442 -2.7144 0.0134 7 7 1.7454 -4.0248 0.0848 8 6 2.2879 -4.7406 -0.8812 9 6 2.7786 -4.1406 -2.0226 10 6 2.6910 -2.7497 -2.1510 11 6 3.1982 -2.0639 -3.3584 12 8 3.8628 -1.0521 -3.2486 13 7 2.9237 -2.5605 -4.5809 14 6 3.2823 -1.9306 -5.8646 15 6 2.2646 -2.5006 -6.8840 16 1 1.3151 -1.9684 -6.8275 17 6 2.8298 -2.4584 -8.3052 18 6 2.1129 -3.9629 -6.3882 19 1 2.9178 -4.5872 -6.7762 20 7 0.8075 -4.5070 -6.7701 21 6 0.6425 -5.8596 -6.9060 22 1 1.4750 -6.5252 -6.7320 23 6 -0.5944 -6.3751 -7.2684 24 7 -0.7530 -7.6751 -7.3985 25 14 -2.0340 -5.2237 -7.5701 26 1 -2.0584 -4.8259 -9.0006 27 1 -3.3021 -5.9163 -7.2272 28 1 -1.8861 -4.0134 -6.7222 29 6 2.2227 -3.8235 -4.8550 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6765 1.9563 0.8900 36 1 3.1300 1.4426 0.0005 37 1 1.1926 -2.1690 0.8289 38 1 2.3483 -5.8139 -0.7774 39 1 3.2205 -4.7362 -2.8077 40 1 3.1841 -0.8472 -5.7960 41 1 4.2990 -2.2013 -6.1492 42 1 3.7555 -3.0325 -8.3452 43 1 2.1055 -2.8881 -8.9972 44 1 3.0311 -1.4245 -8.5855 45 1 0.0598 -3.9091 -6.9268 46 1 -1.6174 -8.0354 -7.6514 47 1 2.7897 -4.6588 -4.4445 48 1 1.2258 -3.7973 -4.4148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054930831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:53 Heat of formation + Delta-G solvation = -36.323589 kcal Electronic energy + Delta-G solvation = -29508.666149 eV Core-core repulsion = 25563.781879 eV Total energy + Delta-G solvation = -3944.884270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19486 -40.89971 -39.51419 -38.96155 -35.99101 -34.68772 -34.19902 -33.24645 -32.63458 -31.33937 -29.54086 -28.28129 -27.81933 -26.02979 -25.27060 -24.66290 -22.95937 -22.22114 -21.65205 -21.11878 -19.53362 -19.21202 -18.57698 -18.11443 -17.34323 -17.08959 -16.65462 -16.39548 -16.01756 -15.92282 -15.67303 -15.26580 -15.06432 -14.87142 -14.78227 -14.51379 -14.30416 -14.14730 -13.80391 -13.67111 -13.57435 -13.42129 -13.18865 -13.04062 -12.96269 -12.90155 -12.77081 -12.30503 -12.16775 -12.08590 -11.95696 -11.89825 -11.80296 -11.54250 -11.36197 -11.01516 -10.86708 -10.53514 -9.78193 -9.55512 -9.36024 -8.00783 -5.35427 -0.33823 0.00365 1.39643 1.40795 1.47534 1.50720 1.82928 1.96089 2.48794 2.63547 3.12011 3.29238 3.34851 3.48913 3.57556 3.63244 3.69253 3.79717 3.82096 3.92029 4.03815 4.07967 4.10488 4.23746 4.31526 4.43951 4.53581 4.58122 4.63038 4.66722 4.73850 4.76677 4.80736 4.82204 4.85296 4.89116 5.04469 5.09178 5.15915 5.18882 5.21361 5.28291 5.38573 5.46827 5.79353 6.14530 6.22598 6.33012 6.75867 6.92408 7.07282 7.81504 7.99460 9.19909 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.003637 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.960109 B = 7697.800926 C = 8442.858219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 C -0.144 4.144 4 O -0.310 6.310 5 C 0.119 3.881 6 C 0.017 3.983 7 N -0.448 5.448 8 C 0.055 3.945 9 C -0.099 4.099 10 C -0.143 4.143 11 C 0.579 3.421 12 O -0.561 6.561 13 N -0.606 5.606 14 C 0.117 3.883 15 C -0.107 4.107 16 H 0.077 0.923 17 C -0.130 4.130 18 C 0.176 3.824 19 H 0.080 0.920 20 N -0.737 5.737 21 C -0.227 4.227 22 H 0.069 0.931 23 C -0.054 4.054 24 N -0.978 5.978 25 Si 0.943 3.057 26 H -0.278 1.278 27 H -0.300 1.300 28 H -0.257 1.257 29 C 0.081 3.919 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.189 0.811 38 H 0.191 0.809 39 H 0.161 0.839 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.079 0.921 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 16.095 13.804 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 C -0.201 4.201 4 O -0.222 6.222 5 C 0.069 3.931 6 C -0.143 4.143 7 N -0.157 5.157 8 C -0.101 4.101 9 C -0.119 4.119 10 C -0.154 4.154 11 C 0.368 3.632 12 O -0.440 6.440 13 N -0.339 5.339 14 C -0.005 4.005 15 C -0.127 4.127 16 H 0.095 0.905 17 C -0.187 4.187 18 C 0.066 3.934 19 H 0.098 0.902 20 N -0.378 5.378 21 C -0.358 4.358 22 H 0.087 0.913 23 C -0.246 4.246 24 N -0.628 5.628 25 Si 0.772 3.228 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.182 1.182 29 C -0.045 4.045 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.206 0.794 38 H 0.208 0.792 39 H 0.178 0.822 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.199 0.801 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.521 16.168 14.465 22.653 hybrid contribution -0.974 0.426 -0.943 1.421 sum 5.546 16.593 13.522 22.112 Atomic orbital electron populations 1.22412 0.93663 1.03103 1.04371 1.22947 0.95430 0.94635 0.86378 1.21869 1.01778 0.92401 1.04069 1.86243 1.80148 1.14938 1.40842 1.20143 0.94143 0.84604 0.94218 1.23327 1.02448 0.90927 0.97570 1.67435 1.11748 1.07135 1.29431 1.23034 0.96242 1.01850 0.88963 1.22586 0.97239 0.91943 1.00085 1.19793 1.05643 0.94599 0.95401 1.17783 0.79624 0.83410 0.82386 1.90746 1.40467 1.26239 1.86545 1.48409 1.56587 1.23683 1.05190 1.22373 0.99046 0.98137 0.80953 1.22615 0.98733 0.95338 0.95973 0.90451 1.21595 1.01122 1.02705 0.93305 1.21427 0.88164 0.93632 0.90221 0.90211 1.42673 1.08604 1.03564 1.83000 1.19037 0.96221 0.82987 1.37561 0.91343 1.25352 1.00176 0.96681 1.02420 1.69851 1.24529 1.12244 1.56225 0.85595 0.79617 0.79137 0.78498 1.20411 1.22746 1.18233 1.23177 0.96286 0.84637 1.00382 0.92328 0.92451 0.87757 0.89060 0.92362 0.87295 0.92418 0.79406 0.79227 0.82151 0.90574 0.89593 0.91570 0.92829 0.90665 0.80084 0.93403 0.90311 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.17 71.98 0.66 -1.95 16 2 C 0.06 1.07 2.85 30.60 0.09 1.16 16 3 C -0.14 -2.13 9.56 71.98 0.69 -1.44 16 4 O -0.31 -8.51 8.86 -79.91 -0.71 -9.22 16 5 C 0.12 3.31 6.61 22.95 0.15 3.46 16 6 C 0.02 0.39 9.43 84.89 0.80 1.20 16 7 N -0.45 -11.30 10.32 -195.59 -2.02 -13.32 16 8 C 0.05 1.29 11.16 84.62 0.94 2.23 16 9 C -0.10 -2.52 8.64 22.62 0.20 -2.33 16 10 C -0.14 -4.30 5.50 -19.81 -0.11 -4.41 16 11 C 0.58 19.40 7.27 86.78 0.63 20.03 16 12 O -0.56 -21.75 16.74 6.08 0.10 -21.65 16 13 N -0.61 -18.43 3.33 -815.19 -2.71 -21.14 16 14 C 0.12 3.09 6.35 86.85 0.55 3.64 16 15 C -0.11 -2.88 3.27 -9.40 -0.03 -2.91 16 16 H 0.08 2.18 8.01 -2.39 -0.02 2.16 16 17 C -0.13 -2.99 9.30 71.98 0.67 -2.32 16 18 C 0.18 5.82 3.08 46.18 0.14 5.96 16 19 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 20 N -0.74 -30.93 4.96 -317.31 -1.57 -32.50 16 21 C -0.23 -11.80 10.44 84.03 0.88 -10.93 16 22 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 23 C -0.05 -3.01 5.50 84.86 0.47 -2.55 16 24 N -0.98 -59.82 13.97 21.65 0.30 -59.52 16 25 Si 0.94 43.53 27.73 68.60 1.90 45.44 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 28 H -0.26 -10.86 6.52 99.48 0.65 -10.21 16 29 C 0.08 2.52 5.35 86.73 0.46 2.99 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.92 6.86 -2.38 -0.02 0.91 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.27 6.38 -2.39 -0.02 1.25 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.19 3.22 5.43 -2.91 -0.02 3.21 16 38 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.16 3.66 5.75 -2.91 -0.02 3.65 16 40 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 41 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 42 H 0.07 1.42 8.11 -2.38 -0.02 1.40 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.37 15.18 5.62 -92.71 -0.52 14.65 16 46 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.08 2.28 5.92 -2.39 -0.01 2.26 16 48 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -71.56 385.74 2.88 -68.68 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.39 Total: 31.39 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.19 Total: 11.85 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.00 Total: -126.48 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.61 Total: -30.87 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.90 Total: 45.44 kcal Total: -71.56 2.88 -68.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054930831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.353 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds