Wall clock time and date at job start Tue Mar 31 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47592 * 2 1 4 4 O 1.42896 * 109.47130 * 120.00378 * 2 1 3 5 5 C 1.35922 * 117.00537 * 94.00586 * 4 2 1 6 6 C 1.38853 * 120.40831 * 174.18769 * 5 4 2 7 7 N 1.31887 * 120.99881 * 180.27944 * 6 5 4 8 8 C 1.31681 * 121.93925 * 359.47317 * 7 6 5 9 9 C 1.39527 * 120.69497 * 0.52646 * 8 7 6 10 10 C 1.47847 * 120.53524 * 179.76391 * 9 8 7 11 11 O 1.21555 * 119.99739 * 7.90384 * 10 9 8 12 12 N 1.34778 * 120.00484 * 187.90354 * 10 9 8 13 13 C 1.47420 * 125.64805 * 175.02234 * 12 10 9 14 14 C 1.54916 * 104.82978 * 204.09063 * 13 12 10 15 15 H 1.09006 * 111.00088 * 81.06486 * 14 13 12 16 16 C 1.52994 * 111.00454 * 204.87687 * 14 13 12 17 17 C 1.55151 * 101.58168 * 322.99483 * 14 13 12 18 18 H 1.09009 * 110.72195 * 276.95864 * 17 14 13 19 19 N 1.46501 * 110.72435 * 153.86537 * 17 14 13 20 20 C 1.36935 * 120.00494 * 154.99540 * 19 17 14 21 21 H 1.08000 * 119.99896 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00334 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47301 * 59.99815 * 24 22 20 26 26 H 1.48502 * 109.46962 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46719 * 299.99657 * 24 22 20 28 28 C 1.47017 * 125.64403 * 354.71580 * 12 10 9 29 29 C 1.38847 * 120.40404 * 354.21683 * 5 4 2 30 30 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47067 * 300.00325 * 1 2 3 32 32 H 1.09001 * 109.46944 * 59.99748 * 1 2 3 33 33 H 1.09001 * 109.47067 * 239.99675 * 2 1 3 34 34 H 1.08996 * 109.47514 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47182 * 300.00106 * 3 2 1 36 36 H 1.09001 * 109.47180 * 59.99744 * 3 2 1 37 37 H 1.07999 * 119.49798 * 0.02562 * 6 5 4 38 38 H 1.08001 * 119.65307 * 180.24625 * 8 7 6 39 39 H 1.08995 * 110.37013 * 322.92627 * 13 12 10 40 40 H 1.08997 * 110.36907 * 85.14484 * 13 12 10 41 41 H 1.08999 * 109.47376 * 58.55163 * 16 14 13 42 42 H 1.09001 * 109.46964 * 178.54698 * 16 14 13 43 43 H 1.08998 * 109.47395 * 298.54935 * 16 14 13 44 44 H 0.97004 * 119.99802 * 334.99863 * 19 17 14 45 45 H 0.97001 * 120.00117 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.88488 * 298.39080 * 28 12 10 47 47 H 1.08997 * 109.88666 * 59.55832 * 28 12 10 48 48 H 1.07997 * 120.87887 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2918 -1.9967 1.0421 6 6 2.8716 -2.6928 2.0944 7 7 3.1586 -3.9753 1.9842 8 6 2.9024 -4.6546 0.8856 9 6 2.3208 -4.0304 -0.2184 10 6 2.0396 -4.7953 -1.4520 11 8 2.1800 -6.0027 -1.4638 12 7 1.6274 -4.1540 -2.5635 13 6 1.4121 -4.7743 -3.8834 14 6 1.5644 -3.6127 -4.8970 15 1 2.6153 -3.4106 -5.1044 16 6 0.8005 -3.9086 -6.1891 17 6 0.9142 -2.4361 -4.1224 18 1 -0.1698 -2.4515 -4.2364 19 7 1.4624 -1.1539 -4.5715 20 6 0.7262 -0.0078 -4.4317 21 1 -0.2585 -0.0490 -3.9900 22 6 1.2454 1.2070 -4.8577 23 7 2.4456 1.2574 -5.3955 24 14 0.2413 2.7706 -4.6664 25 1 -0.0593 2.9931 -3.2294 26 1 1.0143 3.9230 -5.1952 27 1 -1.0295 2.6384 -5.4233 28 6 1.3121 -2.7212 -2.6587 29 6 2.0077 -2.6687 -0.1393 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.0948 -2.1750 3.0155 38 1 3.1493 -5.7049 0.8370 39 1 2.1640 -5.5411 -4.0694 40 1 0.4116 -5.2028 -3.9425 41 1 -0.2538 -4.0646 -5.9603 42 1 0.9030 -3.0660 -6.8729 43 1 1.2078 -4.8061 -6.6546 44 1 2.3470 -1.1168 -4.9679 45 1 2.8084 2.1062 -5.6936 46 1 0.4834 -2.4790 -1.9934 47 1 2.1885 -2.1302 -2.3929 48 1 1.5569 -2.1542 -0.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054978449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:26 Heat of formation + Delta-G solvation = -5.644002 kcal Electronic energy + Delta-G solvation = -30330.150209 eV Core-core repulsion = 26386.596305 eV Total energy + Delta-G solvation = -3943.553903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12440 -39.69163 -38.51954 -37.50992 -34.32103 -33.42045 -33.22820 -31.84542 -30.83483 -30.15595 -27.94033 -27.19764 -26.63280 -24.98591 -23.88012 -23.56554 -21.66000 -21.03701 -20.29284 -20.06656 -17.77377 -17.34910 -17.24325 -16.74658 -16.41056 -15.78978 -15.52378 -15.46708 -14.84374 -14.40787 -14.21582 -14.03196 -13.76145 -13.69222 -13.35755 -13.22655 -12.98080 -12.67734 -12.58108 -12.39505 -12.26626 -12.11105 -12.06243 -11.84229 -11.68054 -11.27305 -11.10455 -10.98319 -10.80622 -10.74680 -10.65993 -10.43985 -10.31389 -10.12871 -9.89481 -9.79662 -9.51944 -9.11608 -8.63544 -8.38350 -7.26468 -6.00362 -3.32417 0.60167 1.18352 2.85648 3.00020 3.06875 3.24820 3.32007 3.34244 3.80368 4.24537 4.37573 4.52561 4.63575 4.73115 4.77632 4.91688 4.95920 4.97682 5.08875 5.10536 5.21074 5.38444 5.39839 5.45275 5.53599 5.65958 5.68789 5.71112 5.74775 5.80972 5.85358 5.86927 5.88921 5.93147 6.00702 6.06366 6.17741 6.21058 6.26508 6.29457 6.31867 6.41099 6.49479 6.68183 7.22204 7.46199 7.55126 7.82404 8.14307 8.16936 9.28478 9.80981 10.16438 11.20920 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.005519 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.393855 B = 5072.337985 C = 7652.391750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.304 6.304 5 C 0.080 3.920 6 C 0.087 3.913 7 N -0.453 5.453 8 C 0.111 3.889 9 C -0.140 4.140 10 C 0.575 3.425 11 O -0.542 6.542 12 N -0.604 5.604 13 C 0.114 3.886 14 C -0.115 4.115 15 H 0.085 0.915 16 C -0.132 4.132 17 C 0.176 3.824 18 H 0.072 0.928 19 N -0.709 5.709 20 C -0.254 4.254 21 H 0.072 0.928 22 C -0.001 4.001 23 N -0.925 5.925 24 Si 0.901 3.099 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.058 3.942 29 C -0.171 4.171 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.388 0.612 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -5.598 7.990 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.217 6.217 5 C 0.032 3.968 6 C -0.071 4.071 7 N -0.161 5.161 8 C -0.047 4.047 9 C -0.145 4.145 10 C 0.363 3.637 11 O -0.421 6.421 12 N -0.337 5.337 13 C -0.009 4.009 14 C -0.135 4.135 15 H 0.103 0.897 16 C -0.190 4.190 17 C 0.063 3.937 18 H 0.090 0.910 19 N -0.348 5.348 20 C -0.385 4.385 21 H 0.090 0.910 22 C -0.199 4.199 23 N -0.571 5.571 24 Si 0.732 3.268 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.067 4.067 29 C -0.197 4.197 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.222 0.778 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.863 -6.359 8.903 11.098 hybrid contribution -0.661 1.475 -0.872 1.836 sum -2.524 -4.884 8.031 9.732 Atomic orbital electron populations 1.22294 0.94451 1.02670 1.03683 1.22641 0.94769 0.94120 0.86819 1.21877 1.02039 0.93254 1.03317 1.86140 1.79816 1.17853 1.37871 1.20137 0.96478 0.85213 0.94950 1.22418 0.96716 0.89984 0.98026 1.67816 1.16220 1.07045 1.25027 1.22810 0.94463 1.00481 0.86934 1.20778 1.03383 0.94001 0.96309 1.17737 0.77239 0.86543 0.82146 1.90754 1.53888 1.13440 1.84065 1.48361 1.65037 1.10697 1.09565 1.22327 1.01447 0.96162 0.80924 1.22668 1.01340 0.94717 0.94734 0.89703 1.21590 0.99425 1.01542 0.96432 1.21311 0.97338 0.86531 0.88513 0.91003 1.42363 1.19509 1.01046 1.71913 1.19155 0.98712 0.85353 1.35265 0.91039 1.24734 0.96629 0.97714 1.00806 1.69636 1.16195 1.25626 1.45675 0.86380 0.79361 0.83205 0.77896 1.20954 1.21568 1.21073 1.23833 1.00016 0.79918 1.02957 1.23599 1.01243 0.94960 0.99864 0.92514 0.91656 0.89742 0.89864 0.91762 0.89544 0.91877 0.81755 0.81405 0.90616 0.91271 0.92744 0.91320 0.93076 0.77757 0.93129 0.91677 0.90242 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.52 37.16 0.35 -1.83 16 2 C 0.07 0.99 2.83 -26.74 -0.08 0.91 16 3 C -0.15 -1.93 9.56 37.15 0.36 -1.57 16 4 O -0.30 -4.22 9.79 -19.49 -0.19 -4.41 16 5 C 0.08 1.13 6.69 -39.13 -0.26 0.87 16 6 C 0.09 1.16 11.13 -17.30 -0.19 0.96 16 7 N -0.45 -6.48 10.34 -12.79 -0.13 -6.62 16 8 C 0.11 1.63 10.76 -17.14 -0.18 1.44 16 9 C -0.14 -2.14 5.89 -104.84 -0.62 -2.76 16 10 C 0.57 9.51 7.81 -12.33 -0.10 9.42 16 11 O -0.54 -10.05 16.69 5.32 0.09 -9.97 16 12 N -0.60 -9.32 3.33 -172.24 -0.57 -9.90 16 13 C 0.11 1.59 6.35 -2.53 -0.02 1.57 16 14 C -0.11 -1.65 3.27 -88.47 -0.29 -1.94 16 15 H 0.08 1.30 8.01 -51.93 -0.42 0.89 16 16 C -0.13 -1.70 9.30 37.15 0.35 -1.35 16 17 C 0.18 2.92 3.08 -66.09 -0.20 2.72 16 18 H 0.07 1.20 7.96 -51.92 -0.41 0.78 16 19 N -0.71 -14.83 5.15 -51.65 -0.27 -15.10 16 20 C -0.25 -5.94 9.96 -15.06 -0.15 -6.09 16 21 H 0.07 1.61 7.83 -52.49 -0.41 1.20 16 22 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 23 N -0.92 -24.88 13.06 55.49 0.72 -24.16 16 24 Si 0.90 19.78 29.55 -169.99 -5.02 14.76 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.06 0.91 4.63 -3.06 -0.01 0.89 16 29 C -0.17 -2.51 7.50 -38.71 -0.29 -2.80 16 30 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.26 5.46 -51.93 -0.28 0.97 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.17 2.27 7.68 -52.49 -0.40 1.87 16 39 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 40 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 41 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.39 8.91 7.76 -40.82 -0.32 8.59 16 45 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.07 0.96 6.81 -51.93 -0.35 0.61 16 47 H 0.08 1.34 6.22 -51.93 -0.32 1.02 16 48 H 0.19 2.70 1.00 -53.29 -0.05 2.64 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -27.43 387.42 -8.14 -35.56 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.17 Total: 13.67 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.43 Total: 0.32 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.25 Total: -55.77 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.10 Total: -14.38 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.43 -8.14 -35.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054978449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.919 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds