Wall clock time and date at job start Tue Mar 31 2020 17:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47592 * 2 1 4 4 O 1.42896 * 109.47130 * 120.00378 * 2 1 3 5 5 C 1.35922 * 117.00537 * 94.00586 * 4 2 1 6 6 C 1.38853 * 120.40831 * 174.18769 * 5 4 2 7 7 N 1.31887 * 120.99881 * 180.27944 * 6 5 4 8 8 C 1.31681 * 121.93925 * 359.47317 * 7 6 5 9 9 C 1.39527 * 120.69497 * 0.52646 * 8 7 6 10 10 C 1.47847 * 120.53524 * 179.76391 * 9 8 7 11 11 O 1.21555 * 119.99739 * 7.90384 * 10 9 8 12 12 N 1.34778 * 120.00484 * 187.90354 * 10 9 8 13 13 C 1.47420 * 125.64805 * 175.02234 * 12 10 9 14 14 C 1.54916 * 104.82978 * 204.09063 * 13 12 10 15 15 H 1.09006 * 111.00088 * 81.06486 * 14 13 12 16 16 C 1.52994 * 111.00454 * 204.87687 * 14 13 12 17 17 C 1.55151 * 101.58168 * 322.99483 * 14 13 12 18 18 H 1.09009 * 110.72195 * 276.95864 * 17 14 13 19 19 N 1.46501 * 110.72435 * 153.86537 * 17 14 13 20 20 C 1.36935 * 120.00494 * 154.99540 * 19 17 14 21 21 H 1.08000 * 119.99896 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00334 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47301 * 59.99815 * 24 22 20 26 26 H 1.48502 * 109.46962 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46719 * 299.99657 * 24 22 20 28 28 C 1.47017 * 125.64403 * 354.71580 * 12 10 9 29 29 C 1.38847 * 120.40404 * 354.21683 * 5 4 2 30 30 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47067 * 300.00325 * 1 2 3 32 32 H 1.09001 * 109.46944 * 59.99748 * 1 2 3 33 33 H 1.09001 * 109.47067 * 239.99675 * 2 1 3 34 34 H 1.08996 * 109.47514 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47182 * 300.00106 * 3 2 1 36 36 H 1.09001 * 109.47180 * 59.99744 * 3 2 1 37 37 H 1.07999 * 119.49798 * 0.02562 * 6 5 4 38 38 H 1.08001 * 119.65307 * 180.24625 * 8 7 6 39 39 H 1.08995 * 110.37013 * 322.92627 * 13 12 10 40 40 H 1.08997 * 110.36907 * 85.14484 * 13 12 10 41 41 H 1.08999 * 109.47376 * 58.55163 * 16 14 13 42 42 H 1.09001 * 109.46964 * 178.54698 * 16 14 13 43 43 H 1.08998 * 109.47395 * 298.54935 * 16 14 13 44 44 H 0.97004 * 119.99802 * 334.99863 * 19 17 14 45 45 H 0.97001 * 120.00117 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.88488 * 298.39080 * 28 12 10 47 47 H 1.08997 * 109.88666 * 59.55832 * 28 12 10 48 48 H 1.07997 * 120.87887 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2918 -1.9967 1.0421 6 6 2.8716 -2.6928 2.0944 7 7 3.1586 -3.9753 1.9842 8 6 2.9024 -4.6546 0.8856 9 6 2.3208 -4.0304 -0.2184 10 6 2.0396 -4.7953 -1.4520 11 8 2.1800 -6.0027 -1.4638 12 7 1.6274 -4.1540 -2.5635 13 6 1.4121 -4.7743 -3.8834 14 6 1.5644 -3.6127 -4.8970 15 1 2.6153 -3.4106 -5.1044 16 6 0.8005 -3.9086 -6.1891 17 6 0.9142 -2.4361 -4.1224 18 1 -0.1698 -2.4515 -4.2364 19 7 1.4624 -1.1539 -4.5715 20 6 0.7262 -0.0078 -4.4317 21 1 -0.2585 -0.0490 -3.9900 22 6 1.2454 1.2070 -4.8577 23 7 2.4456 1.2574 -5.3955 24 14 0.2413 2.7706 -4.6664 25 1 -0.0593 2.9931 -3.2294 26 1 1.0143 3.9230 -5.1952 27 1 -1.0295 2.6384 -5.4233 28 6 1.3121 -2.7212 -2.6587 29 6 2.0077 -2.6687 -0.1393 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.0948 -2.1750 3.0155 38 1 3.1493 -5.7049 0.8370 39 1 2.1640 -5.5411 -4.0694 40 1 0.4116 -5.2028 -3.9425 41 1 -0.2538 -4.0646 -5.9603 42 1 0.9030 -3.0660 -6.8729 43 1 1.2078 -4.8061 -6.6546 44 1 2.3470 -1.1168 -4.9679 45 1 2.8084 2.1062 -5.6936 46 1 0.4834 -2.4790 -1.9934 47 1 2.1885 -2.1302 -2.3929 48 1 1.5569 -2.1542 -0.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054978449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:25 Heat of formation + Delta-G solvation = -21.374345 kcal Electronic energy + Delta-G solvation = -30330.832328 eV Core-core repulsion = 26386.596305 eV Total energy + Delta-G solvation = -3944.236022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.29357 -40.91375 -39.67305 -38.81307 -35.92597 -34.67794 -34.33124 -33.19190 -32.34003 -31.27530 -29.40266 -28.23182 -27.77557 -26.35755 -25.37408 -24.71911 -23.01310 -22.13735 -21.52332 -21.33802 -19.08230 -18.95389 -18.45517 -17.85827 -17.65270 -17.02522 -16.83240 -16.61783 -16.37454 -15.67942 -15.41912 -15.32740 -15.22374 -14.88264 -14.76822 -14.34567 -14.32123 -13.90659 -13.81002 -13.50340 -13.33351 -13.26785 -13.14094 -12.96800 -12.91152 -12.87452 -12.76534 -12.23917 -12.12568 -12.02233 -12.00759 -11.77898 -11.67228 -11.60125 -11.40196 -10.96693 -10.94353 -10.61142 -9.88081 -9.52219 -9.03941 -7.90400 -5.20417 -0.54893 0.04838 1.51786 1.54473 1.59411 1.61250 1.76308 1.96615 2.58394 2.65626 3.06581 3.36758 3.42684 3.52216 3.56041 3.67849 3.77309 3.78940 3.83934 3.91343 3.96833 4.11044 4.18893 4.25208 4.32512 4.39377 4.50458 4.65366 4.67441 4.70018 4.72763 4.76399 4.79611 4.81573 4.83181 4.88032 5.02896 5.09056 5.14705 5.19187 5.22191 5.27931 5.32243 5.47730 5.59089 6.11191 6.25746 6.29475 6.70687 6.86754 7.37756 8.06839 8.32206 9.31916 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.005519 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.393855 B = 5072.337985 C = 7652.391750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.301 6.301 5 C 0.074 3.926 6 C 0.096 3.904 7 N -0.459 5.459 8 C 0.111 3.889 9 C -0.154 4.154 10 C 0.574 3.426 11 O -0.565 6.565 12 N -0.604 5.604 13 C 0.115 3.885 14 C -0.105 4.105 15 H 0.072 0.928 16 C -0.126 4.126 17 C 0.172 3.828 18 H 0.078 0.922 19 N -0.717 5.717 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.058 4.058 23 N -0.964 5.964 24 Si 0.953 3.047 25 H -0.266 1.266 26 H -0.305 1.305 27 H -0.283 1.283 28 C 0.072 3.928 29 C -0.172 4.172 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.375 0.625 45 H 0.249 0.751 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -6.084 9.295 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 C -0.203 4.203 4 O -0.214 6.214 5 C 0.026 3.974 6 C -0.062 4.062 7 N -0.168 5.168 8 C -0.047 4.047 9 C -0.159 4.159 10 C 0.363 3.637 11 O -0.447 6.447 12 N -0.335 5.335 13 C -0.007 4.007 14 C -0.125 4.125 15 H 0.090 0.910 16 C -0.184 4.184 17 C 0.061 3.939 18 H 0.096 0.904 19 N -0.355 5.355 20 C -0.368 4.368 21 H 0.100 0.900 22 C -0.251 4.251 23 N -0.614 5.614 24 Si 0.782 3.218 25 H -0.192 1.192 26 H -0.232 1.232 27 H -0.210 1.210 28 C -0.053 4.053 29 C -0.198 4.198 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.211 0.789 38 H 0.192 0.808 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.208 0.792 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.138 -6.880 10.226 12.718 hybrid contribution -0.277 1.553 -1.231 2.001 sum -3.416 -5.327 8.995 10.998 Atomic orbital electron populations 1.22258 0.93429 1.02897 1.04117 1.22653 0.95588 0.94170 0.86109 1.21852 1.01876 0.92945 1.03637 1.86132 1.79892 1.17674 1.37729 1.20242 0.96814 0.85356 0.95034 1.22888 0.95088 0.89612 0.98655 1.67893 1.16535 1.07530 1.24799 1.22952 0.94006 1.00897 0.86818 1.20736 1.04654 0.94243 0.96223 1.17902 0.76850 0.86339 0.82583 1.90736 1.55080 1.14323 1.84517 1.48390 1.64636 1.10542 1.09968 1.22422 1.02594 0.95812 0.79822 1.22575 1.00644 0.93809 0.95492 0.90960 1.21547 1.00091 1.01683 0.95087 1.21481 0.97611 0.85532 0.89298 0.90368 1.42455 1.18902 1.02093 1.72098 1.19515 0.98747 0.85904 1.32659 0.89952 1.25343 0.97505 1.00314 1.01959 1.69786 1.18003 1.25397 1.48196 0.85533 0.77788 0.79905 0.78543 1.19179 1.23227 1.20962 1.23545 0.99737 0.79939 1.02088 1.23567 1.01288 0.94756 1.00170 0.92396 0.90190 0.90299 0.91702 0.92067 0.90686 0.90019 0.78917 0.80754 0.90272 0.89483 0.91491 0.93274 0.90916 0.79197 0.94186 0.90619 0.91708 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.52 71.98 0.69 -3.29 16 2 C 0.07 1.85 2.83 30.59 0.09 1.94 16 3 C -0.15 -3.65 9.56 71.98 0.69 -2.96 16 4 O -0.30 -7.85 9.79 -92.67 -0.91 -8.75 16 5 C 0.07 1.97 6.69 22.56 0.15 2.12 16 6 C 0.10 2.34 11.13 84.83 0.94 3.29 16 7 N -0.46 -12.34 10.34 -194.39 -2.01 -14.35 16 8 C 0.11 3.12 10.76 85.03 0.91 4.04 16 9 C -0.15 -4.58 5.89 -20.01 -0.12 -4.70 16 10 C 0.57 18.52 7.81 86.79 0.68 19.19 16 11 O -0.57 -20.50 16.69 -3.89 -0.06 -20.57 16 12 N -0.60 -17.97 3.33 -817.13 -2.72 -20.69 16 13 C 0.12 3.02 6.35 86.86 0.55 3.57 16 14 C -0.11 -2.91 3.27 -9.40 -0.03 -2.94 16 15 H 0.07 2.20 8.01 -2.38 -0.02 2.18 16 16 C -0.13 -3.03 9.30 71.98 0.67 -2.36 16 17 C 0.17 5.54 3.08 46.18 0.14 5.68 16 18 H 0.08 2.46 7.96 -2.38 -0.02 2.44 16 19 N -0.72 -30.01 5.15 -317.31 -1.64 -31.65 16 20 C -0.24 -10.96 9.96 84.03 0.84 -10.13 16 21 H 0.08 3.58 7.83 -2.91 -0.02 3.56 16 22 C -0.06 -2.91 5.50 84.86 0.47 -2.44 16 23 N -0.96 -53.09 13.06 21.65 0.28 -52.81 16 24 Si 0.95 40.59 29.55 68.60 2.03 42.62 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.31 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 28 C 0.07 2.19 4.63 86.73 0.40 2.59 16 29 C -0.17 -4.91 7.50 22.83 0.17 -4.74 16 30 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.95 5.46 -2.39 -0.01 1.93 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.18 4.57 7.68 -2.91 -0.02 4.55 16 39 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 40 H 0.09 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.38 17.60 7.76 -92.71 -0.72 16.88 16 45 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 46 H 0.08 2.15 6.81 -2.39 -0.02 2.13 16 47 H 0.06 2.20 6.22 -2.39 -0.01 2.18 16 48 H 0.18 5.20 1.00 -3.66 0.00 5.20 16 Total: -1.00 -58.04 387.42 2.48 -55.56 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.26 Total: 41.76 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 7.24 Total: 8.88 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -6.08 Total: -119.50 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.97 Total: -29.32 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -58.04 2.48 -55.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054978449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.188 kcal (2) G-P(sol) polarization free energy of solvation -58.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds