Wall clock time and date at job start Tue Mar 31 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 O 1.42891 * 109.46924 * 120.00434 * 2 1 3 5 5 C 1.35923 * 117.00009 * 146.00321 * 4 2 1 6 6 C 1.38854 * 120.40544 * 185.81202 * 5 4 2 7 7 N 1.31886 * 120.99895 * 179.97438 * 6 5 4 8 8 C 1.31679 * 121.93770 * 0.02562 * 7 6 5 9 9 C 1.39523 * 120.69527 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.53171 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99505 * 352.15358 * 10 9 8 12 12 N 1.34773 * 120.00140 * 172.15155 * 10 9 8 13 13 C 1.47417 * 125.64935 * 184.78131 * 12 10 9 14 14 C 1.55137 * 104.72546 * 155.81476 * 13 12 10 15 15 H 1.08998 * 111.19325 * 279.19144 * 14 13 12 16 16 C 1.52994 * 110.93976 * 155.28642 * 14 13 12 17 17 C 1.55159 * 101.48118 * 37.29337 * 14 13 12 18 18 H 1.08994 * 110.72048 * 205.96849 * 17 14 13 19 19 N 1.46503 * 110.86958 * 82.76844 * 17 14 13 20 20 C 1.36939 * 119.99702 * 159.93566 * 19 17 14 21 21 H 1.08000 * 120.00314 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99579 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99740 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00596 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46985 * 89.99582 * 24 22 20 26 26 H 1.48491 * 109.47566 * 210.00232 * 24 22 20 27 27 H 1.48507 * 109.46696 * 330.00153 * 24 22 20 28 28 C 1.47021 * 125.64715 * 5.08614 * 12 10 9 29 29 C 1.38841 * 120.40437 * 5.81630 * 5 4 2 30 30 H 1.08998 * 109.46792 * 300.00116 * 1 2 3 31 31 H 1.08999 * 109.47130 * 59.99525 * 1 2 3 32 32 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46513 * 240.00344 * 2 1 3 34 34 H 1.09003 * 109.46747 * 59.99842 * 3 2 1 35 35 H 1.08997 * 109.47213 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46952 * 300.00290 * 3 2 1 37 37 H 1.07995 * 119.49901 * 0.26523 * 6 5 4 38 38 H 1.08005 * 119.65018 * 179.97438 * 8 7 6 39 39 H 1.08998 * 110.37076 * 274.74377 * 13 12 10 40 40 H 1.08998 * 110.36858 * 37.06794 * 13 12 10 41 41 H 1.09003 * 109.47428 * 307.95916 * 16 14 13 42 42 H 1.09005 * 109.47274 * 67.96216 * 16 14 13 43 43 H 1.09000 * 109.47446 * 187.96077 * 16 14 13 44 44 H 0.97002 * 120.00128 * 339.93255 * 19 17 14 45 45 H 0.96999 * 120.00111 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88395 * 300.44154 * 28 12 10 47 47 H 1.08994 * 109.88410 * 61.60704 * 28 12 10 48 48 H 1.07999 * 120.88067 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1586 -1.3837 1.0421 6 6 3.6215 -2.1625 2.0943 7 7 4.7378 -2.8565 1.9860 8 6 5.4613 -2.8447 0.8858 9 6 5.0673 -2.0874 -0.2177 10 6 5.8828 -2.0764 -1.4510 11 8 6.9736 -2.6124 -1.4630 12 7 5.4165 -1.4721 -2.5618 13 6 6.0756 -1.4713 -3.8805 14 6 4.9273 -1.2292 -4.8951 15 1 4.3845 -2.1513 -5.1034 16 6 5.4611 -0.6069 -6.1868 17 6 4.0368 -0.2228 -4.1194 18 1 3.0013 -0.2870 -4.4534 19 7 4.5433 1.1439 -4.2672 20 6 3.7174 2.2097 -4.0282 21 1 2.6926 2.0428 -3.7311 22 6 4.1973 3.5047 -4.1687 23 7 3.4033 4.5291 -3.9395 24 14 5.9696 3.7935 -4.6832 25 1 6.0492 3.8685 -6.1642 26 1 6.4540 5.0685 -4.0962 27 1 6.8146 2.6727 -4.1983 28 6 4.1696 -0.6992 -2.6576 29 6 3.8873 -1.3390 -0.1389 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.0565 -2.2042 3.0137 38 1 6.3698 -3.4268 0.8376 39 1 6.8103 -0.6682 -3.9370 40 1 6.5501 -2.4345 -4.0680 41 1 6.0567 0.2739 -5.9467 42 1 6.0819 -1.3336 -6.7108 43 1 4.6249 -0.3174 -6.8233 44 1 5.4637 1.2938 -4.5343 45 1 3.7387 5.4340 -4.0373 46 1 3.3208 -1.3307 -2.3950 47 1 4.2145 0.1612 -1.9900 48 1 3.5528 -0.7420 -0.9744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054978451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:29 Heat of formation + Delta-G solvation = 2.792711 kcal Electronic energy + Delta-G solvation = -30354.666746 eV Core-core repulsion = 26411.478686 eV Total energy + Delta-G solvation = -3943.188060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18196 -39.78676 -38.62264 -37.64048 -34.37064 -33.41911 -33.22829 -31.90578 -30.93126 -30.21186 -28.50905 -27.25955 -26.67539 -25.04099 -23.69598 -23.55614 -22.10195 -21.09945 -20.27165 -19.63965 -18.10209 -17.73065 -17.29361 -16.81624 -16.40400 -15.83120 -15.54407 -15.47183 -14.78213 -14.48314 -14.39869 -14.19035 -14.02879 -13.77462 -13.38260 -13.13333 -12.93143 -12.78109 -12.51232 -12.37130 -12.31399 -12.29368 -12.10802 -11.90282 -11.79439 -11.62146 -11.15416 -11.03563 -10.92090 -10.82384 -10.66491 -10.47738 -10.31449 -10.10335 -9.84406 -9.75272 -9.56013 -9.13895 -8.66225 -8.42533 -7.51920 -5.97440 -3.35084 0.56681 1.13486 2.84614 2.96520 3.00243 3.24036 3.26742 3.34066 3.76339 4.21377 4.41528 4.47099 4.56388 4.63108 4.66203 4.83635 4.86831 4.90985 4.94188 5.05335 5.06527 5.13236 5.34965 5.39962 5.44560 5.55210 5.58231 5.66971 5.67774 5.73636 5.77510 5.82602 5.85590 5.87923 5.89900 6.01775 6.03800 6.07778 6.20005 6.25513 6.35573 6.37111 6.43434 6.54191 7.14756 7.53510 7.75009 7.78556 8.14124 8.20880 8.97391 9.70555 9.88544 11.19662 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.005056 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.455719 B = 5536.469397 C = 7230.566632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.303 6.303 5 C 0.080 3.920 6 C 0.088 3.912 7 N -0.452 5.452 8 C 0.112 3.888 9 C -0.138 4.138 10 C 0.575 3.425 11 O -0.541 6.541 12 N -0.601 5.601 13 C 0.113 3.887 14 C -0.116 4.116 15 H 0.087 0.913 16 C -0.133 4.133 17 C 0.177 3.823 18 H 0.082 0.918 19 N -0.735 5.735 20 C -0.255 4.255 21 H 0.093 0.907 22 C 0.016 3.984 23 N -0.925 5.925 24 Si 0.876 3.124 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.057 3.943 29 C -0.171 4.171 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.365 0.635 45 H 0.262 0.738 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -12.391 4.477 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 C -0.233 4.233 4 O -0.216 6.216 5 C 0.031 3.969 6 C -0.071 4.071 7 N -0.161 5.161 8 C -0.046 4.046 9 C -0.143 4.143 10 C 0.363 3.637 11 O -0.420 6.420 12 N -0.333 5.333 13 C -0.009 4.009 14 C -0.136 4.136 15 H 0.105 0.895 16 C -0.191 4.191 17 C 0.065 3.935 18 H 0.100 0.900 19 N -0.378 5.378 20 C -0.384 4.384 21 H 0.111 0.889 22 C -0.182 4.182 23 N -0.571 5.571 24 Si 0.706 3.294 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.068 4.068 29 C -0.196 4.196 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.199 0.801 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.858 -12.961 5.442 14.345 hybrid contribution 1.050 1.093 -1.107 1.877 sum -1.808 -11.868 4.335 12.764 Atomic orbital electron populations 1.21900 0.92275 1.02843 1.03598 1.22658 0.95627 0.93464 0.86578 1.22307 1.02264 0.94632 1.04048 1.86143 1.36011 1.61776 1.37653 1.20116 0.88062 0.93692 0.94983 1.22424 0.93554 0.93148 0.97953 1.67822 1.04820 1.18554 1.24864 1.22820 0.98783 0.96137 0.86850 1.20781 0.96238 1.00875 0.96408 1.17711 0.85400 0.78514 0.82054 1.90759 1.20663 1.46755 1.83873 1.48296 1.24091 1.51178 1.09688 1.22374 0.95538 1.02014 0.80944 1.22707 0.96464 0.99402 0.95041 0.89499 1.21566 1.01448 1.00265 0.95783 1.21215 0.97508 0.85130 0.89628 0.90022 1.42817 1.11742 1.00412 1.82812 1.18985 0.94919 0.84017 1.40520 0.88928 1.24627 0.97151 0.95436 1.00948 1.69673 1.34910 0.98047 1.54489 0.86695 0.86341 0.77548 0.78794 1.20759 1.21578 1.20353 1.23740 0.85083 0.94628 1.03369 1.23552 0.95054 1.01002 1.00016 0.91391 0.89905 0.91968 0.90871 0.91621 0.91994 0.89292 0.81724 0.81382 0.91255 0.90612 0.92240 0.93037 0.91477 0.80051 0.92830 0.91829 0.89388 0.79999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.56 37.16 0.36 -1.08 16 2 C 0.07 0.86 2.83 -26.73 -0.08 0.78 16 3 C -0.18 -2.33 9.52 37.16 0.35 -1.98 16 4 O -0.30 -3.87 9.79 -19.50 -0.19 -4.06 16 5 C 0.08 1.06 6.69 -39.13 -0.26 0.80 16 6 C 0.09 1.12 11.13 -17.30 -0.19 0.92 16 7 N -0.45 -6.31 10.34 -12.79 -0.13 -6.45 16 8 C 0.11 1.62 10.76 -17.14 -0.18 1.43 16 9 C -0.14 -2.08 5.89 -104.84 -0.62 -2.70 16 10 C 0.57 9.62 7.81 -12.32 -0.10 9.52 16 11 O -0.54 -10.26 16.69 5.32 0.09 -10.17 16 12 N -0.60 -9.39 3.32 -172.12 -0.57 -9.96 16 13 C 0.11 1.66 6.34 -2.41 -0.02 1.64 16 14 C -0.12 -1.53 3.53 -88.35 -0.31 -1.84 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.13 -1.72 8.85 37.15 0.33 -1.39 16 17 C 0.18 2.78 3.36 -66.09 -0.22 2.56 16 18 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 19 N -0.74 -14.72 4.42 -51.65 -0.23 -14.94 16 20 C -0.26 -6.17 10.46 -15.06 -0.16 -6.33 16 21 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 22 C 0.02 0.41 5.50 -17.43 -0.10 0.31 16 23 N -0.93 -26.46 13.97 55.49 0.78 -25.69 16 24 Si 0.88 20.56 27.74 -169.99 -4.71 15.84 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 28 C 0.06 0.85 4.61 -3.07 -0.01 0.84 16 29 C -0.17 -2.40 7.49 -38.72 -0.29 -2.69 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.85 5.47 -51.93 -0.28 0.57 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.17 2.26 7.68 -52.48 -0.40 1.86 16 39 H 0.07 1.10 7.99 -51.93 -0.41 0.68 16 40 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.06 0.88 6.39 -51.93 -0.33 0.55 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.36 7.48 3.98 -40.82 -0.16 7.32 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.06 0.81 6.35 -51.93 -0.33 0.48 16 47 H 0.09 1.49 6.70 -51.93 -0.35 1.14 16 48 H 0.18 2.52 1.00 -53.31 -0.05 2.46 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -29.73 380.74 -7.72 -37.44 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.98 Total: 11.46 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.50 Total: 0.78 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.16 Total: -57.04 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.10 Total: -14.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.73 -7.72 -37.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054978451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.237 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds