Wall clock time and date at job start Tue Mar 31 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 O 1.42891 * 109.46924 * 120.00434 * 2 1 3 5 5 C 1.35923 * 117.00009 * 146.00321 * 4 2 1 6 6 C 1.38854 * 120.40544 * 185.81202 * 5 4 2 7 7 N 1.31886 * 120.99895 * 179.97438 * 6 5 4 8 8 C 1.31679 * 121.93770 * 0.02562 * 7 6 5 9 9 C 1.39523 * 120.69527 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.53171 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99505 * 352.15358 * 10 9 8 12 12 N 1.34773 * 120.00140 * 172.15155 * 10 9 8 13 13 C 1.47417 * 125.64935 * 184.78131 * 12 10 9 14 14 C 1.55137 * 104.72546 * 155.81476 * 13 12 10 15 15 H 1.08998 * 111.19325 * 279.19144 * 14 13 12 16 16 C 1.52994 * 110.93976 * 155.28642 * 14 13 12 17 17 C 1.55159 * 101.48118 * 37.29337 * 14 13 12 18 18 H 1.08994 * 110.72048 * 205.96849 * 17 14 13 19 19 N 1.46503 * 110.86958 * 82.76844 * 17 14 13 20 20 C 1.36939 * 119.99702 * 159.93566 * 19 17 14 21 21 H 1.08000 * 120.00314 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99579 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99740 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00596 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46985 * 89.99582 * 24 22 20 26 26 H 1.48491 * 109.47566 * 210.00232 * 24 22 20 27 27 H 1.48507 * 109.46696 * 330.00153 * 24 22 20 28 28 C 1.47021 * 125.64715 * 5.08614 * 12 10 9 29 29 C 1.38841 * 120.40437 * 5.81630 * 5 4 2 30 30 H 1.08998 * 109.46792 * 300.00116 * 1 2 3 31 31 H 1.08999 * 109.47130 * 59.99525 * 1 2 3 32 32 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46513 * 240.00344 * 2 1 3 34 34 H 1.09003 * 109.46747 * 59.99842 * 3 2 1 35 35 H 1.08997 * 109.47213 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46952 * 300.00290 * 3 2 1 37 37 H 1.07995 * 119.49901 * 0.26523 * 6 5 4 38 38 H 1.08005 * 119.65018 * 179.97438 * 8 7 6 39 39 H 1.08998 * 110.37076 * 274.74377 * 13 12 10 40 40 H 1.08998 * 110.36858 * 37.06794 * 13 12 10 41 41 H 1.09003 * 109.47428 * 307.95916 * 16 14 13 42 42 H 1.09005 * 109.47274 * 67.96216 * 16 14 13 43 43 H 1.09000 * 109.47446 * 187.96077 * 16 14 13 44 44 H 0.97002 * 120.00128 * 339.93255 * 19 17 14 45 45 H 0.96999 * 120.00111 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88395 * 300.44154 * 28 12 10 47 47 H 1.08994 * 109.88410 * 61.60704 * 28 12 10 48 48 H 1.07999 * 120.88067 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1586 -1.3837 1.0421 6 6 3.6215 -2.1625 2.0943 7 7 4.7378 -2.8565 1.9860 8 6 5.4613 -2.8447 0.8858 9 6 5.0673 -2.0874 -0.2177 10 6 5.8828 -2.0764 -1.4510 11 8 6.9736 -2.6124 -1.4630 12 7 5.4165 -1.4721 -2.5618 13 6 6.0756 -1.4713 -3.8805 14 6 4.9273 -1.2292 -4.8951 15 1 4.3845 -2.1513 -5.1034 16 6 5.4611 -0.6069 -6.1868 17 6 4.0368 -0.2228 -4.1194 18 1 3.0013 -0.2870 -4.4534 19 7 4.5433 1.1439 -4.2672 20 6 3.7174 2.2097 -4.0282 21 1 2.6926 2.0428 -3.7311 22 6 4.1973 3.5047 -4.1687 23 7 3.4033 4.5291 -3.9395 24 14 5.9696 3.7935 -4.6832 25 1 6.0492 3.8685 -6.1642 26 1 6.4540 5.0685 -4.0962 27 1 6.8146 2.6727 -4.1983 28 6 4.1696 -0.6992 -2.6576 29 6 3.8873 -1.3390 -0.1389 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.0565 -2.2042 3.0137 38 1 6.3698 -3.4268 0.8376 39 1 6.8103 -0.6682 -3.9370 40 1 6.5501 -2.4345 -4.0680 41 1 6.0567 0.2739 -5.9467 42 1 6.0819 -1.3336 -6.7108 43 1 4.6249 -0.3174 -6.8233 44 1 5.4637 1.2938 -4.5343 45 1 3.7387 5.4340 -4.0373 46 1 3.3208 -1.3307 -2.3950 47 1 4.2145 0.1612 -1.9900 48 1 3.5528 -0.7420 -0.9744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054978451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:28 Heat of formation + Delta-G solvation = -15.471392 kcal Electronic energy + Delta-G solvation = -30355.458737 eV Core-core repulsion = 26411.478686 eV Total energy + Delta-G solvation = -3943.980051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31123 -40.97037 -39.73071 -38.90960 -35.93788 -34.64367 -34.32828 -33.31457 -32.42708 -31.28872 -29.91430 -28.20133 -27.80689 -26.29182 -25.20837 -24.73734 -23.40595 -22.10158 -21.43942 -20.94106 -19.81446 -18.92182 -18.46032 -17.87414 -17.64720 -17.03772 -16.77247 -16.62302 -16.33229 -15.97074 -15.56847 -15.39040 -15.27555 -14.85489 -14.62074 -14.58851 -14.24406 -14.03914 -13.66561 -13.53379 -13.42911 -13.28505 -13.16096 -13.12395 -13.08097 -12.91453 -12.88423 -12.38581 -12.09350 -12.02256 -11.94489 -11.75717 -11.63168 -11.59519 -11.37263 -11.05277 -10.97253 -10.63399 -9.90198 -9.53539 -9.31912 -8.00110 -5.32093 -0.55056 0.04478 1.36011 1.37149 1.43293 1.61772 1.76691 1.97431 2.47521 2.64496 3.06923 3.27560 3.41011 3.48884 3.51471 3.53693 3.66726 3.74519 3.81893 3.91417 3.96707 3.99348 4.08512 4.28560 4.32409 4.39132 4.48020 4.59335 4.67354 4.72068 4.72646 4.74262 4.80886 4.82171 4.85668 4.90775 4.92599 5.07923 5.13369 5.24499 5.24893 5.26925 5.28514 5.46739 5.82388 6.11863 6.23318 6.27789 6.70841 6.86096 7.09235 7.84834 8.01554 9.19983 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.005056 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.455719 B = 5536.469397 C = 7230.566632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 C -0.171 4.171 4 O -0.301 6.301 5 C 0.076 3.924 6 C 0.096 3.904 7 N -0.460 5.460 8 C 0.110 3.890 9 C -0.152 4.152 10 C 0.572 3.428 11 O -0.570 6.570 12 N -0.601 5.601 13 C 0.109 3.891 14 C -0.100 4.100 15 H 0.118 0.882 16 C -0.132 4.132 17 C 0.167 3.833 18 H 0.094 0.906 19 N -0.739 5.739 20 C -0.217 4.217 21 H 0.078 0.922 22 C -0.049 4.049 23 N -0.973 5.973 24 Si 0.927 3.073 25 H -0.277 1.277 26 H -0.305 1.305 27 H -0.264 1.264 28 C 0.066 3.934 29 C -0.172 4.172 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.195 0.805 38 H 0.173 0.827 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.364 0.636 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -14.577 4.462 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 C -0.229 4.229 4 O -0.214 6.214 5 C 0.028 3.972 6 C -0.063 4.063 7 N -0.168 5.168 8 C -0.047 4.047 9 C -0.157 4.157 10 C 0.361 3.639 11 O -0.451 6.451 12 N -0.332 5.332 13 C -0.013 4.013 14 C -0.119 4.119 15 H 0.136 0.864 16 C -0.190 4.190 17 C 0.057 3.943 18 H 0.112 0.888 19 N -0.382 5.382 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.241 4.241 23 N -0.623 5.623 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.233 1.233 27 H -0.190 1.190 28 C -0.059 4.059 29 C -0.197 4.197 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.198 0.802 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.436 -15.211 5.407 16.505 hybrid contribution 1.162 1.684 -1.037 2.294 sum -2.275 -13.527 4.370 14.396 Atomic orbital electron populations 1.21904 0.90294 1.03874 1.04166 1.22731 0.97070 0.92134 0.86429 1.22246 1.00825 0.96058 1.03741 1.86155 1.35611 1.61613 1.38017 1.20206 0.88228 0.93880 0.94883 1.22907 0.92957 0.91753 0.98641 1.67892 1.05302 1.19043 1.24560 1.22920 0.99010 0.95987 0.86829 1.20702 0.96737 1.02117 0.96153 1.17961 0.85188 0.78119 0.82602 1.90735 1.21838 1.48150 1.84383 1.48374 1.24231 1.50695 1.09920 1.22480 0.95881 1.02100 0.80851 1.22694 0.95323 0.99608 0.94303 0.86409 1.21566 1.01551 1.00136 0.95742 1.21504 0.98660 0.83520 0.90601 0.88802 1.42852 1.11245 1.01363 1.82719 1.19028 0.94508 0.84795 1.36456 0.90410 1.25190 1.00141 0.95718 1.03053 1.69810 1.36508 0.98132 1.57890 0.85844 0.83099 0.76878 0.78491 1.20309 1.23292 1.18979 1.23585 0.85839 0.94398 1.02035 1.23528 0.94887 1.00771 1.00522 0.90913 0.89312 0.90676 0.90690 0.90908 0.94076 0.90628 0.78859 0.81008 0.92790 0.89480 0.94351 0.90437 0.91505 0.80180 0.93662 0.89149 0.91542 0.80049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.56 71.98 0.69 -1.81 16 2 C 0.07 1.60 2.83 30.60 0.09 1.68 16 3 C -0.17 -4.54 9.52 71.98 0.69 -3.85 16 4 O -0.30 -7.09 9.79 -92.68 -0.91 -7.99 16 5 C 0.08 1.89 6.69 22.56 0.15 2.04 16 6 C 0.10 2.22 11.13 84.83 0.94 3.17 16 7 N -0.46 -12.03 10.34 -194.39 -2.01 -14.04 16 8 C 0.11 3.06 10.76 85.03 0.91 3.97 16 9 C -0.15 -4.45 5.89 -20.01 -0.12 -4.57 16 10 C 0.57 18.65 7.81 86.79 0.68 19.33 16 11 O -0.57 -21.31 16.69 -3.88 -0.06 -21.38 16 12 N -0.60 -17.92 3.32 -816.76 -2.72 -20.64 16 13 C 0.11 2.96 6.34 86.94 0.55 3.51 16 14 C -0.10 -2.33 3.53 -9.32 -0.03 -2.36 16 15 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.13 -3.06 8.85 71.98 0.64 -2.43 16 17 C 0.17 4.89 3.36 46.18 0.16 5.05 16 18 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 19 N -0.74 -28.79 4.42 -317.33 -1.40 -30.19 16 20 C -0.22 -10.49 10.46 84.03 0.88 -9.61 16 21 H 0.08 3.97 8.06 -2.91 -0.02 3.94 16 22 C -0.05 -2.60 5.50 84.86 0.47 -2.13 16 23 N -0.97 -57.21 13.97 21.65 0.30 -56.91 16 24 Si 0.93 42.93 27.74 68.60 1.90 44.83 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 28 C 0.07 1.86 4.61 86.73 0.40 2.26 16 29 C -0.17 -4.61 7.49 22.83 0.17 -4.44 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.63 5.47 -2.39 -0.01 1.62 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.17 4.53 7.68 -2.91 -0.02 4.51 16 39 H 0.05 1.64 7.99 -2.39 -0.02 1.62 16 40 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 41 H 0.04 1.05 6.39 -2.39 -0.02 1.04 16 42 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.36 14.49 3.98 -92.71 -0.37 14.13 16 45 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.09 2.10 6.35 -2.39 -0.02 2.08 16 47 H 0.07 2.21 6.70 -2.39 -0.02 2.19 16 48 H 0.18 4.82 1.00 -3.69 0.00 4.82 16 Total: -1.00 -64.51 380.74 2.92 -61.59 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.56 Total: 34.91 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.26 Total: 9.82 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -5.83 Total: -121.78 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.97 Total: -29.37 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.90 Total: 44.83 kcal Total: -64.51 2.92 -61.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054978451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.117 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds