Wall clock time and date at job start Tue Mar 31 2020 17:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50719 * 2 1 4 4 C 1.53271 * 109.50696 * 120.09255 * 2 1 3 5 5 N 1.47163 * 108.56147 * 172.90806 * 4 2 1 6 6 C 1.34781 * 121.07817 * 128.75817 * 5 4 2 7 7 O 1.21689 * 119.99923 * 186.27069 * 6 5 4 8 8 C 1.46671 * 119.99573 * 6.27577 * 6 5 4 9 9 C 1.37872 * 126.23640 * 19.41865 * 8 6 5 10 10 C 1.39834 * 107.08488 * 180.02562 * 9 8 6 11 11 C 1.35454 * 107.86743 * 0.02562 * 10 9 8 12 12 N 1.35530 * 108.86881 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.67306 * 180.26167 * 12 11 10 14 14 C 1.47335 * 117.85305 * 309.03128 * 5 4 2 15 15 C 1.51950 * 108.61876 * 48.87559 * 14 5 4 16 16 C 1.54380 * 110.22645 * 73.56156 * 15 14 5 17 17 C 1.54467 * 102.86571 * 152.42535 * 16 15 14 18 18 N 1.47088 * 107.29674 * 338.50862 * 17 16 15 19 19 C 1.36940 * 125.62368 * 179.01598 * 18 17 16 20 20 H 1.08000 * 119.99393 * 180.02562 * 19 18 17 21 21 C 1.38804 * 120.00256 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99996 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47135 * 60.00095 * 23 21 19 25 25 H 1.48506 * 109.47169 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47338 * 300.00207 * 23 21 19 27 27 C 1.47576 * 108.74677 * 359.01788 * 18 17 16 28 28 O 1.41883 * 111.52187 * 310.16648 * 15 14 5 29 29 H 1.09002 * 109.47712 * 299.90902 * 1 2 3 30 30 H 1.09003 * 109.47242 * 59.90744 * 1 2 3 31 31 H 1.08999 * 109.47615 * 179.90105 * 1 2 3 32 32 H 1.08997 * 109.62400 * 53.18901 * 4 2 1 33 33 H 1.08998 * 109.77953 * 292.71752 * 4 2 1 34 34 H 1.07998 * 126.45925 * 0.02562 * 9 8 6 35 35 H 1.08006 * 126.06929 * 179.97438 * 10 9 8 36 36 H 1.08003 * 125.56149 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47394 * 264.01163 * 13 12 11 38 38 H 1.08994 * 109.47384 * 24.02228 * 13 12 11 39 39 H 1.09006 * 109.46527 * 144.01970 * 13 12 11 40 40 H 1.08994 * 109.68331 * 168.66745 * 14 5 4 41 41 H 1.09000 * 109.67998 * 289.21871 * 14 5 4 42 42 H 1.08996 * 110.73941 * 270.76931 * 16 15 14 43 43 H 1.08999 * 110.73550 * 34.08749 * 16 15 14 44 44 H 1.08997 * 109.87683 * 97.93005 * 17 16 15 45 45 H 1.08993 * 109.87647 * 219.07888 * 17 16 15 46 46 H 0.97001 * 120.00119 * 180.02562 * 22 21 19 47 47 H 1.09003 * 110.37165 * 264.47974 * 27 18 17 48 48 H 1.08990 * 110.37797 * 142.12973 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7244 1.2500 5 7 3.5032 -0.8630 1.1457 6 6 4.3124 -0.4745 2.1511 7 8 5.5199 -0.4911 2.0012 8 6 3.7375 -0.0319 3.4258 9 6 2.4645 -0.2999 3.8825 10 6 2.3399 0.3113 5.1340 11 6 3.5127 0.9287 5.4136 12 7 4.3700 0.7285 4.3832 13 6 5.7438 1.2312 4.3048 14 6 4.0535 -1.4346 -0.0957 15 6 3.4217 -0.7220 -1.2797 16 6 4.0032 0.7014 -1.4184 17 6 3.8583 0.9864 -2.9296 18 7 3.7517 -0.3126 -3.6113 19 6 3.5907 -0.4953 -4.9589 20 1 3.5222 -1.4941 -5.3640 21 6 3.5155 0.6032 -5.8042 22 7 3.5995 1.8204 -5.3105 23 14 3.2966 0.3539 -7.6424 24 1 2.0308 -0.3804 -7.8951 25 1 3.2464 1.6752 -8.3186 26 1 4.4390 -0.4311 -8.1751 27 6 3.8469 -1.3864 -2.6035 28 8 2.0081 -0.6776 -1.1666 29 1 -0.3634 0.5124 0.8908 30 1 -0.3634 0.5153 -0.8892 31 1 -0.3634 -1.0276 -0.0018 32 1 1.5842 -1.7116 1.3141 33 1 1.7916 -0.1465 2.1396 34 1 1.7065 -0.8737 3.3702 35 1 1.4638 0.2947 5.7654 36 1 3.7292 1.4891 6.3112 37 1 5.7578 2.1644 3.7419 38 1 6.1240 1.4080 5.3109 39 1 6.3720 0.4950 3.8032 40 1 5.1340 -1.2931 -0.1175 41 1 3.8210 -2.4984 -0.1447 42 1 3.4220 1.4145 -0.8338 43 1 5.0517 0.7206 -1.1209 44 1 2.9592 1.5751 -3.1111 45 1 4.7349 1.5239 -3.2910 46 1 3.5466 2.5880 -5.9011 47 1 4.8717 -1.7510 -2.5331 48 1 3.1691 -2.2025 -2.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071138747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:23 Heat of formation + Delta-G solvation = 33.436850 kcal Electronic energy + Delta-G solvation = -30405.294451 eV Core-core repulsion = 26463.435221 eV Total energy + Delta-G solvation = -3941.859230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72037 -40.24150 -38.39634 -36.39742 -34.80296 -33.22057 -32.85412 -31.31308 -30.16105 -29.08039 -28.23385 -27.02999 -26.28367 -25.59683 -23.82374 -22.19451 -21.64633 -20.86414 -20.16181 -19.41126 -19.03137 -17.38850 -16.99159 -16.57268 -16.40233 -15.77550 -15.44420 -14.98019 -14.86283 -14.59752 -14.16479 -13.89658 -13.69960 -13.65986 -13.38747 -13.31448 -12.92721 -12.82185 -12.53422 -12.32904 -12.27066 -12.21926 -11.95694 -11.90542 -11.55063 -11.42156 -10.94773 -10.87219 -10.82102 -10.29517 -10.19180 -10.08132 -10.05964 -9.83827 -9.62469 -9.47854 -8.91642 -8.54293 -8.53132 -8.24336 -6.77416 -5.64656 -2.97839 1.33202 2.36575 2.53236 3.07329 3.22693 3.45264 3.48889 3.50350 3.92183 4.37091 4.54114 4.58497 4.73100 4.77803 4.96858 5.02810 5.09096 5.12885 5.17382 5.21214 5.28353 5.40851 5.41538 5.50596 5.56839 5.62591 5.65735 5.80036 5.81846 5.84479 5.92044 5.96775 6.05774 6.17482 6.23457 6.35135 6.50176 6.52785 6.58070 6.60921 6.68396 6.76117 6.97912 7.31263 7.60111 7.68255 7.73014 7.88585 8.07029 8.30954 9.27494 9.87581 10.53479 11.47165 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.003129 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.519606 B = 8945.107931 C = 9441.785462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.064 0.936 4 C 0.050 3.950 5 N -0.595 5.595 6 C 0.590 3.410 7 O -0.549 6.549 8 C -0.044 4.044 9 C -0.158 4.158 10 C -0.208 4.208 11 C 0.010 3.990 12 N -0.411 5.411 13 C 0.063 3.937 14 C 0.100 3.900 15 C 0.094 3.906 16 C -0.166 4.166 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.153 3.847 28 O -0.344 6.344 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.252 0.748 47 H 0.037 0.963 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -2.273 23.229 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 H 0.082 0.918 4 C -0.073 4.073 5 N -0.327 5.327 6 C 0.379 3.621 7 O -0.428 6.428 8 C -0.157 4.157 9 C -0.183 4.183 10 C -0.231 4.231 11 C -0.125 4.125 12 N -0.083 5.083 13 C -0.078 4.078 14 C -0.023 4.023 15 C 0.052 3.948 16 C -0.204 4.204 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.026 3.974 28 O -0.263 6.263 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.142 -2.088 22.745 22.941 hybrid contribution -0.016 0.169 -0.672 0.693 sum -2.159 -1.919 22.073 22.261 Atomic orbital electron populations 1.21687 0.92421 1.02971 1.02761 1.22467 0.95356 0.96074 0.85092 0.91791 1.23419 0.79794 1.02545 1.01506 1.47766 1.06933 1.62091 1.15944 1.16973 0.85764 0.77193 0.82152 1.90770 1.14027 1.55826 1.82224 1.20054 0.94524 1.07347 0.93823 1.21769 0.94944 1.04551 0.97081 1.20860 0.98486 1.05330 0.98473 1.22033 0.90920 1.05700 0.93810 1.43874 1.12005 1.38124 1.14320 1.22301 0.79971 1.01734 1.03805 1.22113 1.00671 0.97405 0.82093 1.22293 0.81188 0.96470 0.94810 1.23371 0.99934 0.95806 1.01296 1.21093 1.00716 0.87819 0.84203 1.44415 1.85882 1.00052 1.02179 1.19002 1.42786 0.92877 0.80614 0.90430 1.24785 1.02306 0.95270 0.98110 1.69961 1.56861 0.96899 1.33326 0.86187 0.77977 0.76565 0.84950 1.21184 1.21686 1.21221 1.21326 0.97482 0.92588 0.85969 1.87914 1.20002 1.76510 1.41872 0.91203 0.91092 0.91733 0.90399 0.86231 0.82476 0.83934 0.81489 0.90562 0.89731 0.87817 0.87901 0.90722 0.92115 0.91713 0.93548 0.94006 0.93813 0.94597 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.57 37.16 0.36 -1.26 16 2 C 0.07 0.98 3.19 -26.59 -0.08 0.89 16 3 H 0.06 0.99 6.23 -51.93 -0.32 0.67 16 4 C 0.05 0.59 4.57 -3.54 -0.02 0.58 16 5 N -0.60 -8.56 2.95 -174.49 -0.52 -9.07 16 6 C 0.59 8.91 7.60 -12.85 -0.10 8.81 16 7 O -0.55 -9.63 14.41 5.20 0.07 -9.56 16 8 C -0.04 -0.55 6.59 -81.98 -0.54 -1.09 16 9 C -0.16 -1.64 8.59 -39.12 -0.34 -1.98 16 10 C -0.21 -1.85 10.81 -39.98 -0.43 -2.29 16 11 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 12 N -0.41 -4.50 3.16 -120.24 -0.38 -4.88 16 13 C 0.06 0.57 10.67 59.85 0.64 1.21 16 14 C 0.10 1.57 5.28 -4.12 -0.02 1.55 16 15 C 0.09 1.74 0.84 -89.85 -0.08 1.67 16 16 C -0.17 -3.36 5.86 -25.24 -0.15 -3.51 16 17 C 0.19 4.74 5.38 -2.95 -0.02 4.73 16 18 N -0.60 -15.80 3.40 -170.32 -0.58 -16.38 16 19 C -0.22 -6.41 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -27.75 10.31 55.49 0.57 -27.18 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.15 3.27 6.42 -2.88 -0.02 3.26 16 28 O -0.34 -6.38 9.93 -35.22 -0.35 -6.73 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.21 3.77 -51.93 -0.20 1.02 16 34 H 0.16 1.36 5.55 -52.49 -0.29 1.07 16 35 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.10 1.14 6.42 -51.93 -0.33 0.81 16 40 H 0.10 1.72 6.82 -51.93 -0.35 1.37 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.18 6.07 -51.93 -0.32 0.86 16 43 H 0.06 1.29 7.81 -51.93 -0.41 0.88 16 44 H 0.05 1.31 7.39 -51.93 -0.38 0.93 16 45 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.04 0.74 7.99 -51.93 -0.42 0.32 16 48 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -34.62 370.45 -9.03 -43.65 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.18 Total: 1.47 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.24 Total: 5.55 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.90 Total: -57.51 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.27 Total: -16.28 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.62 -9.03 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071138747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.091 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds