Wall clock time and date at job start Tue Mar 31 2020 17:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50719 * 2 1 4 4 C 1.53271 * 109.50696 * 120.09255 * 2 1 3 5 5 N 1.47163 * 108.56147 * 172.90806 * 4 2 1 6 6 C 1.34781 * 121.07817 * 128.75817 * 5 4 2 7 7 O 1.21689 * 119.99923 * 186.27069 * 6 5 4 8 8 C 1.46671 * 119.99573 * 6.27577 * 6 5 4 9 9 C 1.37872 * 126.23640 * 19.41865 * 8 6 5 10 10 C 1.39834 * 107.08488 * 180.02562 * 9 8 6 11 11 C 1.35454 * 107.86743 * 0.02562 * 10 9 8 12 12 N 1.35530 * 108.86881 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.67306 * 180.26167 * 12 11 10 14 14 C 1.47335 * 117.85305 * 309.03128 * 5 4 2 15 15 C 1.51950 * 108.61876 * 48.87559 * 14 5 4 16 16 C 1.54380 * 110.22645 * 73.56156 * 15 14 5 17 17 C 1.54467 * 102.86571 * 152.42535 * 16 15 14 18 18 N 1.47088 * 107.29674 * 338.50862 * 17 16 15 19 19 C 1.36940 * 125.62368 * 179.01598 * 18 17 16 20 20 H 1.08000 * 119.99393 * 180.02562 * 19 18 17 21 21 C 1.38804 * 120.00256 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99996 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47135 * 60.00095 * 23 21 19 25 25 H 1.48506 * 109.47169 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47338 * 300.00207 * 23 21 19 27 27 C 1.47576 * 108.74677 * 359.01788 * 18 17 16 28 28 O 1.41883 * 111.52187 * 310.16648 * 15 14 5 29 29 H 1.09002 * 109.47712 * 299.90902 * 1 2 3 30 30 H 1.09003 * 109.47242 * 59.90744 * 1 2 3 31 31 H 1.08999 * 109.47615 * 179.90105 * 1 2 3 32 32 H 1.08997 * 109.62400 * 53.18901 * 4 2 1 33 33 H 1.08998 * 109.77953 * 292.71752 * 4 2 1 34 34 H 1.07998 * 126.45925 * 0.02562 * 9 8 6 35 35 H 1.08006 * 126.06929 * 179.97438 * 10 9 8 36 36 H 1.08003 * 125.56149 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47394 * 264.01163 * 13 12 11 38 38 H 1.08994 * 109.47384 * 24.02228 * 13 12 11 39 39 H 1.09006 * 109.46527 * 144.01970 * 13 12 11 40 40 H 1.08994 * 109.68331 * 168.66745 * 14 5 4 41 41 H 1.09000 * 109.67998 * 289.21871 * 14 5 4 42 42 H 1.08996 * 110.73941 * 270.76931 * 16 15 14 43 43 H 1.08999 * 110.73550 * 34.08749 * 16 15 14 44 44 H 1.08997 * 109.87683 * 97.93005 * 17 16 15 45 45 H 1.08993 * 109.87647 * 219.07888 * 17 16 15 46 46 H 0.97001 * 120.00119 * 180.02562 * 22 21 19 47 47 H 1.09003 * 110.37165 * 264.47974 * 27 18 17 48 48 H 1.08990 * 110.37797 * 142.12973 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7244 1.2500 5 7 3.5032 -0.8630 1.1457 6 6 4.3124 -0.4745 2.1511 7 8 5.5199 -0.4911 2.0012 8 6 3.7375 -0.0319 3.4258 9 6 2.4645 -0.2999 3.8825 10 6 2.3399 0.3113 5.1340 11 6 3.5127 0.9287 5.4136 12 7 4.3700 0.7285 4.3832 13 6 5.7438 1.2312 4.3048 14 6 4.0535 -1.4346 -0.0957 15 6 3.4217 -0.7220 -1.2797 16 6 4.0032 0.7014 -1.4184 17 6 3.8583 0.9864 -2.9296 18 7 3.7517 -0.3126 -3.6113 19 6 3.5907 -0.4953 -4.9589 20 1 3.5222 -1.4941 -5.3640 21 6 3.5155 0.6032 -5.8042 22 7 3.5995 1.8204 -5.3105 23 14 3.2966 0.3539 -7.6424 24 1 2.0308 -0.3804 -7.8951 25 1 3.2464 1.6752 -8.3186 26 1 4.4390 -0.4311 -8.1751 27 6 3.8469 -1.3864 -2.6035 28 8 2.0081 -0.6776 -1.1666 29 1 -0.3634 0.5124 0.8908 30 1 -0.3634 0.5153 -0.8892 31 1 -0.3634 -1.0276 -0.0018 32 1 1.5842 -1.7116 1.3141 33 1 1.7916 -0.1465 2.1396 34 1 1.7065 -0.8737 3.3702 35 1 1.4638 0.2947 5.7654 36 1 3.7292 1.4891 6.3112 37 1 5.7578 2.1644 3.7419 38 1 6.1240 1.4080 5.3109 39 1 6.3720 0.4950 3.8032 40 1 5.1340 -1.2931 -0.1175 41 1 3.8210 -2.4984 -0.1447 42 1 3.4220 1.4145 -0.8338 43 1 5.0517 0.7206 -1.1209 44 1 2.9592 1.5751 -3.1111 45 1 4.7349 1.5239 -3.2910 46 1 3.5466 2.5880 -5.9011 47 1 4.8717 -1.7510 -2.5331 48 1 3.1691 -2.2025 -2.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071138747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:23 Heat of formation + Delta-G solvation = 10.855940 kcal Electronic energy + Delta-G solvation = -30406.273633 eV Core-core repulsion = 26463.435221 eV Total energy + Delta-G solvation = -3942.838412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.57298 -41.47248 -39.64388 -38.00448 -36.03087 -34.83782 -33.72516 -32.95728 -31.34444 -30.76478 -29.62865 -27.91949 -27.30320 -27.08167 -25.58528 -23.30969 -22.86680 -22.04687 -21.64841 -20.62299 -20.12648 -18.97375 -18.31451 -17.94084 -17.50825 -16.83603 -16.72412 -16.39406 -16.17812 -15.89441 -15.67675 -15.36949 -15.13837 -14.76489 -14.54550 -14.18904 -14.09438 -14.05230 -13.83997 -13.60521 -13.43045 -13.22281 -13.11091 -13.01337 -12.96025 -12.80593 -12.73367 -12.42230 -12.26856 -12.09328 -12.04808 -11.86789 -11.69458 -11.49077 -11.00706 -10.88465 -10.70833 -9.65281 -9.64671 -9.12961 -8.92779 -7.84978 -5.21237 0.45627 1.44612 1.47025 1.49673 1.55503 1.83646 2.19153 2.25582 2.49020 2.61739 3.32725 3.37838 3.50957 3.56683 3.82174 3.88620 3.92852 3.97139 4.04765 4.20313 4.21493 4.34053 4.35696 4.39721 4.45154 4.52268 4.53927 4.58133 4.70099 4.71318 4.74532 4.75763 4.83233 4.93081 5.04125 5.09813 5.13098 5.22432 5.30154 5.34176 5.41638 5.55189 5.67813 5.83550 6.00022 6.15659 6.23536 6.34622 6.37881 6.98420 7.07367 7.74064 8.39394 9.25877 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.003129 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.519606 B = 8945.107931 C = 9441.785462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.058 3.942 5 N -0.598 5.598 6 C 0.585 3.415 7 O -0.586 6.586 8 C -0.088 4.088 9 C -0.148 4.148 10 C -0.215 4.215 11 C 0.023 3.977 12 N -0.422 5.422 13 C 0.062 3.938 14 C 0.109 3.891 15 C 0.110 3.890 16 C -0.149 4.149 17 C 0.200 3.800 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.147 3.853 28 O -0.369 6.369 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.204 0.796 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.008 0.992 45 H 0.004 0.996 46 H 0.246 0.754 47 H 0.049 0.951 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -3.315 26.037 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 H 0.063 0.937 4 C -0.063 4.063 5 N -0.329 5.329 6 C 0.376 3.624 7 O -0.468 6.468 8 C -0.201 4.201 9 C -0.174 4.174 10 C -0.238 4.238 11 C -0.112 4.112 12 N -0.095 5.095 13 C -0.079 4.079 14 C -0.014 4.014 15 C 0.069 3.931 16 C -0.188 4.188 17 C 0.075 3.925 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.104 0.896 21 C -0.261 4.261 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.021 3.979 28 O -0.288 6.288 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.160 0.840 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.221 0.779 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.781 -3.167 25.578 26.049 hybrid contribution 0.454 0.524 -1.439 1.597 sum -3.327 -2.643 24.139 24.510 Atomic orbital electron populations 1.21714 0.90053 1.03985 1.03464 1.22775 0.97171 0.95030 0.84764 0.93696 1.23559 0.78210 1.03819 1.00761 1.47810 1.07970 1.61969 1.15196 1.17408 0.85385 0.76495 0.83071 1.90744 1.15614 1.57402 1.83072 1.19919 0.95963 1.10416 0.93818 1.22067 0.94079 1.03659 0.97599 1.21262 0.99560 1.04822 0.98162 1.22764 0.90309 1.04355 0.93814 1.44110 1.12669 1.38131 1.14544 1.22335 0.79336 1.00558 1.05631 1.21853 0.99702 0.98093 0.81789 1.21982 0.81871 0.94579 0.94689 1.23163 1.00420 0.97799 0.97410 1.20731 0.97092 0.87257 0.87429 1.44700 1.85808 1.01543 1.02622 1.19459 1.42149 0.93354 0.82024 0.89592 1.25707 1.02574 0.95014 1.02844 1.70205 1.58058 0.97541 1.34546 0.85085 0.78354 0.76275 0.79200 1.20138 1.22117 1.20107 1.21529 0.98342 0.91690 0.86328 1.87876 1.19440 1.77093 1.44437 0.87619 0.93275 0.90514 0.88132 0.84033 0.80818 0.81212 0.77927 0.90859 0.86200 0.90430 0.89124 0.88720 0.91366 0.91547 0.97414 0.97759 0.94505 0.93297 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.57 71.98 0.69 -2.11 16 2 C 0.06 1.65 3.19 30.68 0.10 1.75 16 3 H 0.05 1.39 6.23 -2.39 -0.01 1.37 16 4 C 0.06 1.23 4.57 86.34 0.39 1.62 16 5 N -0.60 -16.52 2.95 -824.19 -2.43 -18.95 16 6 C 0.58 17.39 7.60 86.44 0.66 18.05 16 7 O -0.59 -21.04 14.41 -4.31 -0.06 -21.10 16 8 C -0.09 -2.10 6.59 40.35 0.27 -1.84 16 9 C -0.15 -2.59 8.59 22.57 0.19 -2.39 16 10 C -0.21 -2.92 10.81 22.01 0.24 -2.69 16 11 C 0.02 0.31 11.37 83.48 0.95 1.26 16 12 N -0.42 -8.35 3.16 -534.32 -1.69 -10.04 16 13 C 0.06 1.06 10.67 127.77 1.36 2.42 16 14 C 0.11 3.38 5.28 85.87 0.45 3.83 16 15 C 0.11 4.13 0.84 -10.30 -0.01 4.12 16 16 C -0.15 -6.31 5.86 31.56 0.18 -6.12 16 17 C 0.20 10.80 5.38 86.77 0.47 11.27 16 18 N -0.62 -33.91 3.40 -692.77 -2.36 -36.27 16 19 C -0.24 -14.11 10.28 84.03 0.86 -13.25 16 20 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.95 -60.06 10.31 21.65 0.22 -59.83 16 23 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 C 0.15 6.35 6.42 86.55 0.56 6.90 16 28 O -0.37 -13.57 9.93 -148.95 -1.48 -15.05 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.14 2.40 3.77 -2.39 -0.01 2.39 16 34 H 0.17 2.27 5.55 -2.91 -0.02 2.26 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.08 1.75 6.42 -2.38 -0.02 1.74 16 40 H 0.09 3.06 6.82 -2.39 -0.02 3.05 16 41 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.07 2.75 6.07 -2.39 -0.01 2.74 16 43 H 0.07 2.76 7.81 -2.39 -0.02 2.74 16 44 H 0.01 0.46 7.39 -2.39 -0.02 0.45 16 45 H 0.00 0.25 7.50 -2.39 -0.02 0.24 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.05 2.00 7.99 -2.39 -0.02 1.98 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -79.99 370.45 3.02 -76.96 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.97 Total: 15.73 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.83 Total: 19.21 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -6.26 Total: -125.10 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.54 Total: -36.16 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.99 3.02 -76.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071138747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.821 kcal (2) G-P(sol) polarization free energy of solvation -79.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds