Wall clock time and date at job start Tue Mar 31 2020 17:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.51323 * 2 1 4 4 C 1.53277 * 109.51229 * 239.90004 * 2 1 3 5 5 N 1.47174 * 108.51773 * 186.98719 * 4 2 1 6 6 C 1.34783 * 121.07656 * 231.28977 * 5 4 2 7 7 O 1.21620 * 119.99880 * 357.22748 * 6 5 4 8 8 C 1.47263 * 119.99781 * 177.22922 * 6 5 4 9 9 C 1.46686 * 126.94168 * 25.74686 * 8 6 5 10 10 C 1.34492 * 106.33255 * 179.82854 * 9 8 6 11 11 N 1.36447 * 108.85039 * 0.43907 * 10 9 8 12 12 C 1.46502 * 124.84968 * 179.73097 * 11 10 9 13 13 C 1.34660 * 110.30341 * 359.70643 * 11 10 9 14 14 C 1.47314 * 117.84670 * 51.31278 * 5 4 2 15 15 C 1.52366 * 108.46922 * 310.86705 * 14 5 4 16 16 C 1.54388 * 110.35635 * 173.32216 * 15 14 5 17 17 C 1.54461 * 102.87378 * 152.38579 * 16 15 14 18 18 N 1.47086 * 107.29635 * 338.50902 * 17 16 15 19 19 C 1.36934 * 125.62990 * 178.96270 * 18 17 16 20 20 H 1.08000 * 119.99772 * 186.85531 * 19 18 17 21 21 C 1.38813 * 119.99818 * 6.86767 * 19 18 17 22 22 N 1.31616 * 120.00345 * 8.00366 * 21 19 18 23 23 Si 1.86801 * 119.99692 * 188.01200 * 21 19 18 24 24 H 1.48502 * 109.47066 * 84.98748 * 23 21 19 25 25 H 1.48503 * 109.47001 * 204.98145 * 23 21 19 26 26 H 1.48499 * 109.47040 * 324.98650 * 23 21 19 27 27 C 1.47577 * 108.73819 * 359.01020 * 18 17 16 28 28 O 1.41871 * 111.47926 * 49.85674 * 15 14 5 29 29 H 1.09006 * 109.47185 * 180.10402 * 1 2 3 30 30 H 1.08993 * 109.47403 * 60.10054 * 1 2 3 31 31 H 1.08998 * 109.47240 * 300.09935 * 1 2 3 32 32 H 1.09004 * 109.63234 * 306.69721 * 4 2 1 33 33 H 1.08998 * 109.63224 * 67.08292 * 4 2 1 34 34 H 1.08003 * 126.83784 * 359.97438 * 9 8 6 35 35 H 1.07995 * 125.57369 * 180.13949 * 10 9 8 36 36 H 1.08996 * 109.46949 * 269.97239 * 12 11 10 37 37 H 1.09001 * 109.46799 * 29.97192 * 12 11 10 38 38 H 1.08998 * 109.47176 * 149.97050 * 12 11 10 39 39 H 1.07998 * 125.80473 * 179.97438 * 13 11 10 40 40 H 1.09003 * 109.63716 * 70.55972 * 14 5 4 41 41 H 1.08996 * 109.64338 * 190.96598 * 14 5 4 42 42 H 1.09003 * 110.73233 * 270.73023 * 16 15 14 43 43 H 1.08992 * 110.73555 * 34.04309 * 16 15 14 44 44 H 1.09009 * 109.87767 * 97.92860 * 17 16 15 45 45 H 1.08989 * 109.87888 * 218.92867 * 17 16 15 46 46 H 0.97001 * 120.00025 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.37388 * 264.48265 * 27 18 17 48 48 H 1.09003 * 110.37142 * 142.14540 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5037 -0.8604 -1.1457 6 6 4.3121 -0.4702 -2.1511 7 8 3.8343 -0.0440 -3.1851 8 6 5.7740 -0.5602 -1.9976 9 6 6.5138 -1.4764 -1.1231 10 6 7.8182 -1.2077 -1.3107 11 7 7.9337 -0.1969 -2.2200 12 6 9.2018 0.3768 -2.6773 13 6 6.7158 0.1977 -2.6372 14 6 4.0546 -1.4369 0.0929 15 6 3.4214 -0.7232 1.2809 16 6 3.8406 -1.4036 2.6019 17 6 3.7623 -0.2482 3.6240 18 7 3.8528 1.0107 2.8687 19 6 3.8014 2.2690 3.4064 20 1 3.7654 3.1321 2.7583 21 6 3.7958 2.4351 4.7846 22 7 3.9980 1.4008 5.5730 23 14 3.5011 4.1267 5.5202 24 1 2.0404 4.3723 5.6272 25 1 4.1144 4.1928 6.8710 26 1 4.1141 5.1598 4.6471 27 6 4.0069 0.6938 1.4356 28 8 2.0081 -0.6776 1.1664 29 1 -0.3634 -1.0277 0.0019 30 1 -0.3634 0.5122 -0.8908 31 1 -0.3633 0.5154 0.8891 32 1 1.5860 -1.7126 -1.3130 33 1 1.7875 -0.1466 -2.1383 34 1 6.0947 -2.2205 -0.4620 35 1 8.6397 -1.7068 -0.8184 36 1 9.4789 1.2085 -2.0296 37 1 9.9795 -0.3861 -2.6418 38 1 9.0904 0.7348 -3.7008 39 1 6.5164 0.9800 -3.3546 40 1 3.8207 -2.5006 0.1375 41 1 5.1356 -1.2986 0.1123 42 1 3.1431 -2.1990 2.8645 43 1 4.8579 -1.7885 2.5319 44 1 2.8142 -0.2913 4.1602 45 1 4.5903 -0.3204 4.3290 46 1 3.9938 1.5169 6.5360 47 1 5.0605 0.7017 1.1564 48 1 3.4470 1.4043 0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071157377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:32 Heat of formation + Delta-G solvation = 30.140366 kcal Electronic energy + Delta-G solvation = -30540.551761 eV Core-core repulsion = 26598.549585 eV Total energy + Delta-G solvation = -3942.002177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42172 -40.13635 -38.33710 -36.11202 -34.63115 -33.20921 -32.71244 -31.25255 -29.45525 -29.18249 -28.18743 -27.54551 -25.87026 -25.52770 -23.74244 -22.19158 -21.44567 -20.58584 -20.01085 -19.32134 -18.81778 -17.42175 -16.86141 -16.46713 -16.10627 -15.71946 -15.51261 -14.97742 -14.61272 -14.45614 -14.23881 -13.97363 -13.69562 -13.43324 -13.36036 -13.21285 -12.88670 -12.69574 -12.43133 -12.33985 -12.08886 -12.07797 -11.94832 -11.76366 -11.44905 -11.33007 -10.92859 -10.83409 -10.75713 -10.31713 -10.19793 -10.07305 -10.01329 -9.61139 -9.56418 -9.38747 -8.64426 -8.55014 -8.43659 -8.11264 -6.73606 -5.64574 -2.98961 1.83506 2.34931 2.66998 3.16357 3.43615 3.48690 3.49811 3.57841 4.02279 4.48016 4.53934 4.75857 4.83687 4.86008 4.90904 5.00089 5.11232 5.15392 5.22218 5.34429 5.38033 5.38379 5.53056 5.59408 5.65697 5.71290 5.73878 5.83423 5.86261 5.89688 5.96121 6.00505 6.20335 6.25240 6.30856 6.47075 6.55758 6.58194 6.66609 6.69025 6.73881 6.94105 7.11049 7.57436 7.59552 7.70257 7.82083 7.87308 8.32601 8.40890 9.27257 9.88057 10.54923 11.45580 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004367 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.057702 B = 6410.273484 C = 7839.781076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.067 0.933 4 C 0.086 3.914 5 N -0.604 5.604 6 C 0.597 3.403 7 O -0.559 6.559 8 C -0.226 4.226 9 C -0.178 4.178 10 C -0.012 4.012 11 N -0.448 5.448 12 C 0.069 3.931 13 C 0.070 3.930 14 C 0.067 3.933 15 C 0.092 3.908 16 C -0.128 4.128 17 C 0.177 3.823 18 N -0.597 5.597 19 C -0.225 4.225 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.122 3.878 28 O -0.350 6.350 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.172 0.828 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.024 0.976 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -7.869 -15.530 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.036 4.036 5 N -0.336 5.336 6 C 0.388 3.612 7 O -0.439 6.439 8 C -0.236 4.236 9 C -0.202 4.202 10 C -0.139 4.139 11 N -0.123 5.123 12 C -0.072 4.072 13 C -0.064 4.064 14 C -0.056 4.056 15 C 0.051 3.949 16 C -0.167 4.167 17 C 0.053 3.947 18 N -0.323 5.323 19 C -0.353 4.353 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.004 4.004 28 O -0.269 6.269 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.189 0.811 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.042 0.958 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.492 -7.499 -15.815 18.668 hybrid contribution 0.007 1.005 0.403 1.083 sum 6.499 -6.494 -15.412 17.943 Atomic orbital electron populations 1.21668 0.92639 1.02686 1.02677 1.22433 0.95144 0.96264 0.84855 0.91563 1.22317 0.79864 1.01564 0.99902 1.47916 1.06394 1.62525 1.16787 1.17395 0.85305 0.76221 0.82314 1.90727 1.76923 1.48203 1.28090 1.20232 0.92129 1.04935 1.06335 1.22319 0.92150 1.03220 1.02510 1.21808 0.98552 0.95344 0.98208 1.43596 1.06300 1.28706 1.33723 1.22116 0.83832 1.00010 1.01287 1.21674 0.82798 1.01026 1.00951 1.23104 1.02143 0.97269 0.83054 1.22322 0.81451 0.96915 0.94244 1.22814 1.00050 0.99799 0.94019 1.21195 1.00926 0.81563 0.91044 1.44395 1.85725 1.02406 0.99729 1.18996 1.43422 0.82784 0.90101 0.90848 1.24753 1.02241 0.97371 0.95945 1.69942 1.55551 1.28292 1.02883 0.86182 0.77911 0.83550 0.78400 1.21608 1.21732 1.20848 1.21897 0.96931 0.93187 0.88407 1.87803 1.20091 1.76655 1.42367 0.91955 0.91279 0.91200 0.91126 0.88559 0.82522 0.81483 0.90507 0.89619 0.89712 0.81079 0.91170 0.85756 0.91004 0.90850 0.95010 0.92089 0.93831 0.95850 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.57 37.16 0.36 -1.50 16 2 C 0.07 1.17 3.20 -26.59 -0.09 1.08 16 3 H 0.07 1.22 6.28 -51.93 -0.33 0.89 16 4 C 0.09 1.29 5.89 -3.53 -0.02 1.27 16 5 N -0.60 -9.55 2.96 -174.03 -0.52 -10.06 16 6 C 0.60 9.98 7.67 -12.59 -0.10 9.88 16 7 O -0.56 -10.65 16.49 5.26 0.09 -10.56 16 8 C -0.23 -3.27 5.90 -103.35 -0.61 -3.87 16 9 C -0.18 -2.17 8.76 -37.50 -0.33 -2.50 16 10 C -0.01 -0.13 11.34 -16.82 -0.19 -0.32 16 11 N -0.45 -4.43 3.09 -124.53 -0.38 -4.81 16 12 C 0.07 0.38 11.04 59.85 0.66 1.04 16 13 C 0.07 0.87 11.21 -16.84 -0.19 0.68 16 14 C 0.07 1.00 4.32 -3.92 -0.02 0.99 16 15 C 0.09 1.69 0.83 -89.64 -0.07 1.62 16 16 C -0.13 -2.39 6.12 -25.24 -0.15 -2.55 16 17 C 0.18 4.37 5.45 -2.96 -0.02 4.36 16 18 N -0.60 -15.66 3.40 -170.32 -0.58 -16.24 16 19 C -0.22 -6.44 10.26 -15.06 -0.15 -6.60 16 20 H 0.07 2.07 7.84 -52.49 -0.41 1.65 16 21 C -0.01 -0.20 5.44 -17.43 -0.09 -0.29 16 22 N -0.92 -27.28 10.50 55.49 0.58 -26.70 16 23 Si 0.91 22.55 29.56 -169.99 -5.03 17.53 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.12 2.68 6.19 -2.88 -0.02 2.66 16 28 O -0.35 -6.68 9.92 -35.22 -0.35 -7.03 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.44 7.10 -51.93 -0.37 1.07 16 34 H 0.16 1.70 5.93 -52.48 -0.31 1.39 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.32 8.13 -51.93 -0.42 -0.11 16 38 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 39 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.13 1.77 3.12 -51.93 -0.16 1.61 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.19 7.99 -51.93 -0.42 0.77 16 44 H 0.03 0.87 7.95 -51.92 -0.41 0.46 16 45 H 0.06 1.64 6.95 -51.94 -0.36 1.28 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.02 0.52 7.82 -51.93 -0.41 0.12 16 48 H 0.04 0.86 6.12 -51.93 -0.32 0.55 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -35.67 375.22 -8.84 -44.51 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.28 Total: 1.78 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.03 Total: 5.94 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.90 Total: -57.82 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.26 Total: -17.60 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.67 -8.84 -44.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071157377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.650 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds