Wall clock time and date at job start Tue Mar 31 2020 17:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.51323 * 2 1 4 4 C 1.53277 * 109.51229 * 239.90004 * 2 1 3 5 5 N 1.47174 * 108.51773 * 186.98719 * 4 2 1 6 6 C 1.34783 * 121.07656 * 231.28977 * 5 4 2 7 7 O 1.21620 * 119.99880 * 357.22748 * 6 5 4 8 8 C 1.47263 * 119.99781 * 177.22922 * 6 5 4 9 9 C 1.46686 * 126.94168 * 25.74686 * 8 6 5 10 10 C 1.34492 * 106.33255 * 179.82854 * 9 8 6 11 11 N 1.36447 * 108.85039 * 0.43907 * 10 9 8 12 12 C 1.46502 * 124.84968 * 179.73097 * 11 10 9 13 13 C 1.34660 * 110.30341 * 359.70643 * 11 10 9 14 14 C 1.47314 * 117.84670 * 51.31278 * 5 4 2 15 15 C 1.52366 * 108.46922 * 310.86705 * 14 5 4 16 16 C 1.54388 * 110.35635 * 173.32216 * 15 14 5 17 17 C 1.54461 * 102.87378 * 152.38579 * 16 15 14 18 18 N 1.47086 * 107.29635 * 338.50902 * 17 16 15 19 19 C 1.36934 * 125.62990 * 178.96270 * 18 17 16 20 20 H 1.08000 * 119.99772 * 186.85531 * 19 18 17 21 21 C 1.38813 * 119.99818 * 6.86767 * 19 18 17 22 22 N 1.31616 * 120.00345 * 8.00366 * 21 19 18 23 23 Si 1.86801 * 119.99692 * 188.01200 * 21 19 18 24 24 H 1.48502 * 109.47066 * 84.98748 * 23 21 19 25 25 H 1.48503 * 109.47001 * 204.98145 * 23 21 19 26 26 H 1.48499 * 109.47040 * 324.98650 * 23 21 19 27 27 C 1.47577 * 108.73819 * 359.01020 * 18 17 16 28 28 O 1.41871 * 111.47926 * 49.85674 * 15 14 5 29 29 H 1.09006 * 109.47185 * 180.10402 * 1 2 3 30 30 H 1.08993 * 109.47403 * 60.10054 * 1 2 3 31 31 H 1.08998 * 109.47240 * 300.09935 * 1 2 3 32 32 H 1.09004 * 109.63234 * 306.69721 * 4 2 1 33 33 H 1.08998 * 109.63224 * 67.08292 * 4 2 1 34 34 H 1.08003 * 126.83784 * 359.97438 * 9 8 6 35 35 H 1.07995 * 125.57369 * 180.13949 * 10 9 8 36 36 H 1.08996 * 109.46949 * 269.97239 * 12 11 10 37 37 H 1.09001 * 109.46799 * 29.97192 * 12 11 10 38 38 H 1.08998 * 109.47176 * 149.97050 * 12 11 10 39 39 H 1.07998 * 125.80473 * 179.97438 * 13 11 10 40 40 H 1.09003 * 109.63716 * 70.55972 * 14 5 4 41 41 H 1.08996 * 109.64338 * 190.96598 * 14 5 4 42 42 H 1.09003 * 110.73233 * 270.73023 * 16 15 14 43 43 H 1.08992 * 110.73555 * 34.04309 * 16 15 14 44 44 H 1.09009 * 109.87767 * 97.92860 * 17 16 15 45 45 H 1.08989 * 109.87888 * 218.92867 * 17 16 15 46 46 H 0.97001 * 120.00025 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.37388 * 264.48265 * 27 18 17 48 48 H 1.09003 * 110.37142 * 142.14540 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5037 -0.8604 -1.1457 6 6 4.3121 -0.4702 -2.1511 7 8 3.8343 -0.0440 -3.1851 8 6 5.7740 -0.5602 -1.9976 9 6 6.5138 -1.4764 -1.1231 10 6 7.8182 -1.2077 -1.3107 11 7 7.9337 -0.1969 -2.2200 12 6 9.2018 0.3768 -2.6773 13 6 6.7158 0.1977 -2.6372 14 6 4.0546 -1.4369 0.0929 15 6 3.4214 -0.7232 1.2809 16 6 3.8406 -1.4036 2.6019 17 6 3.7623 -0.2482 3.6240 18 7 3.8528 1.0107 2.8687 19 6 3.8014 2.2690 3.4064 20 1 3.7654 3.1321 2.7583 21 6 3.7958 2.4351 4.7846 22 7 3.9980 1.4008 5.5730 23 14 3.5011 4.1267 5.5202 24 1 2.0404 4.3723 5.6272 25 1 4.1144 4.1928 6.8710 26 1 4.1141 5.1598 4.6471 27 6 4.0069 0.6938 1.4356 28 8 2.0081 -0.6776 1.1664 29 1 -0.3634 -1.0277 0.0019 30 1 -0.3634 0.5122 -0.8908 31 1 -0.3633 0.5154 0.8891 32 1 1.5860 -1.7126 -1.3130 33 1 1.7875 -0.1466 -2.1383 34 1 6.0947 -2.2205 -0.4620 35 1 8.6397 -1.7068 -0.8184 36 1 9.4789 1.2085 -2.0296 37 1 9.9795 -0.3861 -2.6418 38 1 9.0904 0.7348 -3.7008 39 1 6.5164 0.9800 -3.3546 40 1 3.8207 -2.5006 0.1375 41 1 5.1356 -1.2986 0.1123 42 1 3.1431 -2.1990 2.8645 43 1 4.8579 -1.7885 2.5319 44 1 2.8142 -0.2913 4.1602 45 1 4.5903 -0.3204 4.3290 46 1 3.9938 1.5169 6.5360 47 1 5.0605 0.7017 1.1564 48 1 3.4470 1.4043 0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071157377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:31 Heat of formation + Delta-G solvation = 6.950825 kcal Electronic energy + Delta-G solvation = -30541.557335 eV Core-core repulsion = 26598.549585 eV Total energy + Delta-G solvation = -3943.007751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35476 -41.40936 -39.70226 -37.78972 -35.91490 -34.84975 -33.69049 -32.89138 -31.09762 -30.19944 -29.70750 -28.51982 -27.47143 -26.61508 -25.48105 -23.35725 -22.78998 -21.96952 -21.29146 -20.63696 -19.97605 -18.96068 -18.42487 -17.75451 -17.31458 -16.89044 -16.77685 -16.46612 -16.06554 -15.76815 -15.48779 -15.41449 -15.11851 -14.97863 -14.50209 -14.22355 -14.02101 -13.94415 -13.66045 -13.45846 -13.29990 -13.19152 -13.05556 -13.04285 -12.95462 -12.81834 -12.70899 -12.44752 -12.20475 -12.05349 -12.03830 -11.93239 -11.63913 -11.44672 -10.94275 -10.81028 -10.69419 -9.62796 -9.40031 -9.21582 -8.86969 -7.84266 -5.21481 0.80841 1.42596 1.45744 1.51896 1.53211 1.80149 2.15873 2.44633 2.47746 2.66811 3.31050 3.50561 3.61067 3.77068 3.85180 3.95945 4.01099 4.03956 4.07961 4.08883 4.21536 4.31083 4.41067 4.48232 4.51740 4.59487 4.61334 4.64291 4.66961 4.74108 4.76540 4.81244 4.95590 4.99037 5.01269 5.04963 5.06525 5.13918 5.23051 5.40940 5.43855 5.65881 5.76840 5.77785 6.08641 6.20246 6.33930 6.39063 6.43395 7.09757 7.18016 7.76022 8.41464 9.23874 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004367 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.057702 B = 6410.273484 C = 7839.781076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 H 0.036 0.964 4 C 0.091 3.909 5 N -0.608 5.608 6 C 0.591 3.409 7 O -0.594 6.594 8 C -0.264 4.264 9 C -0.198 4.198 10 C -0.003 4.003 11 N -0.443 5.443 12 C 0.061 3.939 13 C 0.063 3.937 14 C 0.077 3.923 15 C 0.101 3.899 16 C -0.114 4.114 17 C 0.184 3.816 18 N -0.617 5.617 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.974 3.026 24 H -0.288 1.288 25 H -0.288 1.288 26 H -0.272 1.272 27 C 0.124 3.876 28 O -0.370 6.370 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.169 0.831 35 H 0.203 0.797 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.177 0.823 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.106 0.894 44 H -0.010 1.010 45 H 0.032 0.968 46 H 0.248 0.752 47 H 0.026 0.974 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -9.028 -16.584 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.054 0.946 4 C -0.031 4.031 5 N -0.339 5.339 6 C 0.383 3.617 7 O -0.477 6.477 8 C -0.274 4.274 9 C -0.221 4.221 10 C -0.130 4.130 11 N -0.117 5.117 12 C -0.079 4.079 13 C -0.073 4.073 14 C -0.045 4.045 15 C 0.060 3.940 16 C -0.152 4.152 17 C 0.060 3.940 18 N -0.343 5.343 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.252 4.252 22 N -0.592 5.592 23 Si 0.802 3.198 24 H -0.215 1.215 25 H -0.214 1.214 26 H -0.197 1.197 27 C -0.002 4.002 28 O -0.289 6.289 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.186 0.814 35 H 0.220 0.780 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.194 0.806 40 H 0.117 0.883 41 H 0.154 0.846 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.009 0.991 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 7.904 -8.666 -16.887 20.561 hybrid contribution -0.372 1.430 0.696 1.634 sum 7.531 -7.236 -16.191 19.267 Atomic orbital electron populations 1.21672 0.90390 1.03905 1.03059 1.22554 0.96898 0.94592 0.84792 0.94641 1.22298 0.79782 1.02370 0.98698 1.48005 1.06681 1.62370 1.16822 1.17827 0.86452 0.75455 0.81924 1.90689 1.77731 1.49873 1.29399 1.20303 0.91175 1.07209 1.08685 1.22494 0.92865 1.03696 1.03037 1.22377 0.98891 0.94566 0.97214 1.43918 1.06830 1.28096 1.32868 1.22447 0.82405 1.00932 1.02107 1.21845 0.83685 1.00966 1.00850 1.23113 1.02434 0.98032 0.80953 1.22248 0.81465 0.94610 0.95726 1.22731 1.02667 0.97758 0.92041 1.20969 0.97488 0.83442 0.92144 1.44670 1.85591 1.02235 1.01772 1.19299 1.43534 0.84037 0.90640 0.91307 1.25559 1.02276 1.01081 0.96244 1.70145 1.56189 1.30101 1.02720 0.85176 0.77581 0.79518 0.77541 1.21478 1.21427 1.19691 1.21994 0.96917 0.95417 0.85828 1.87782 1.20407 1.76806 1.43907 0.90259 0.88877 0.92837 0.88986 0.88828 0.81421 0.78047 0.89970 0.87133 0.88384 0.80558 0.88294 0.84611 0.89147 0.87547 0.99138 0.94944 0.94240 0.95634 0.96110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.57 71.98 0.69 -2.76 16 2 C 0.07 2.28 3.20 30.69 0.10 2.38 16 3 H 0.04 1.37 6.28 -2.39 -0.01 1.35 16 4 C 0.09 2.63 5.89 86.34 0.51 3.14 16 5 N -0.61 -18.63 2.96 -822.74 -2.44 -21.06 16 6 C 0.59 19.62 7.67 86.62 0.66 20.28 16 7 O -0.59 -22.92 16.49 -4.10 -0.07 -22.98 16 8 C -0.26 -7.37 5.90 -19.04 -0.11 -7.48 16 9 C -0.20 -4.36 8.76 23.62 0.21 -4.16 16 10 C 0.00 -0.05 11.34 83.12 0.94 0.89 16 11 N -0.44 -7.66 3.09 -547.90 -1.69 -9.35 16 12 C 0.06 0.49 11.04 127.77 1.41 1.90 16 13 C 0.06 1.50 11.21 83.91 0.94 2.44 16 14 C 0.08 2.15 4.32 86.01 0.37 2.52 16 15 C 0.10 3.62 0.83 -10.16 -0.01 3.61 16 16 C -0.11 -4.10 6.12 31.56 0.19 -3.91 16 17 C 0.18 9.33 5.45 86.76 0.47 9.80 16 18 N -0.62 -33.34 3.40 -692.77 -2.36 -35.70 16 19 C -0.25 -14.55 10.26 84.03 0.86 -13.69 16 20 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 21 C -0.06 -3.40 5.44 84.86 0.46 -2.94 16 22 N -0.94 -57.59 10.50 21.65 0.23 -57.36 16 23 Si 0.97 47.16 29.56 68.60 2.03 49.19 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 27 C 0.12 5.52 6.19 86.54 0.54 6.06 16 28 O -0.37 -13.97 9.92 -148.95 -1.48 -15.45 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.09 2.77 7.10 -2.39 -0.02 2.75 16 34 H 0.17 3.14 5.93 -2.91 -0.02 3.13 16 35 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.37 8.13 -2.39 -0.02 0.35 16 38 H 0.10 0.55 8.13 -2.39 -0.02 0.53 16 39 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.14 3.55 3.12 -2.39 -0.01 3.55 16 42 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 43 H 0.11 3.15 7.99 -2.39 -0.02 3.13 16 44 H -0.01 -0.56 7.95 -2.38 -0.02 -0.58 16 45 H 0.03 1.81 6.95 -2.39 -0.02 1.79 16 46 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.03 1.14 7.82 -2.39 -0.02 1.12 16 48 H 0.02 0.99 6.12 -2.39 -0.01 0.97 16 Total: -1.00 -81.16 375.22 3.42 -77.74 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.96 Total: 16.88 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 8.24 Total: 18.09 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -6.26 Total: -123.47 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.54 Total: -38.43 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -81.16 3.42 -77.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071157377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.688 kcal (2) G-P(sol) polarization free energy of solvation -81.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds