Wall clock time and date at job start Tue Mar 31 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51371 * 2 1 4 4 C 1.53268 * 109.51274 * 120.10459 * 2 1 3 5 5 N 1.47167 * 108.55088 * 172.87253 * 4 2 1 6 6 C 1.34777 * 121.06798 * 128.85049 * 5 4 2 7 7 O 1.21287 * 119.99979 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00197 * 0.02562 * 6 5 4 9 9 C 1.50697 * 109.47340 * 180.02562 * 8 6 5 10 10 C 1.34850 * 125.89613 * 84.99881 * 9 8 6 11 11 C 1.40890 * 107.41886 * 180.02562 * 10 9 8 12 12 C 1.34846 * 107.41984 * 0.02562 * 11 10 9 13 13 N 1.36341 * 108.21672 * 359.73550 * 12 11 10 14 14 H 0.97008 * 125.63751 * 180.26220 * 13 12 11 15 15 C 1.47306 * 117.86550 * 308.86384 * 5 4 2 16 16 C 1.52520 * 108.39555 * 49.39853 * 15 5 4 17 17 C 1.54487 * 110.09517 * 186.95471 * 16 15 5 18 18 C 1.55249 * 101.44101 * 206.80711 * 17 16 15 19 19 N 1.47487 * 104.78814 * 36.64952 * 18 17 16 20 20 C 1.36939 * 125.66309 * 155.93083 * 19 18 17 21 21 H 1.08001 * 120.00015 * 196.00569 * 20 19 18 22 22 C 1.38812 * 119.99593 * 16.01309 * 20 19 18 23 23 N 1.31617 * 119.99629 * 201.20940 * 22 20 19 24 24 Si 1.86798 * 120.00262 * 21.21092 * 22 20 19 25 25 H 1.48505 * 109.46756 * 275.67738 * 24 22 20 26 26 H 1.48497 * 109.47027 * 35.67374 * 24 22 20 27 27 H 1.48496 * 109.47358 * 155.67976 * 24 22 20 28 28 C 1.47181 * 108.67465 * 335.67485 * 19 18 17 29 29 O 1.42064 * 111.11578 * 309.56873 * 16 15 5 30 30 H 1.08996 * 109.47232 * 299.90196 * 1 2 3 31 31 H 1.09007 * 109.47166 * 59.89757 * 1 2 3 32 32 H 1.08994 * 109.46938 * 179.89285 * 1 2 3 33 33 H 1.08997 * 109.62770 * 53.15136 * 4 2 1 34 34 H 1.09002 * 109.62072 * 292.58210 * 4 2 1 35 35 H 1.09002 * 109.47164 * 300.00769 * 8 6 5 36 36 H 1.08998 * 109.46947 * 60.00207 * 8 6 5 37 37 H 1.07999 * 126.28377 * 0.02562 * 10 9 8 38 38 H 1.08005 * 126.28489 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.88905 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.67599 * 289.67242 * 15 5 4 41 41 H 1.09001 * 109.71061 * 169.14846 * 15 5 4 42 42 H 1.09001 * 111.01705 * 325.04133 * 17 16 15 43 43 H 1.09000 * 111.01334 * 88.87660 * 17 16 15 44 44 H 1.08998 * 110.48448 * 277.79146 * 18 17 16 45 45 H 1.09001 * 110.32829 * 155.42862 * 18 17 16 46 46 H 0.97002 * 120.00167 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.90681 * 121.11024 * 28 19 18 48 48 H 1.08997 * 109.90297 * 242.18084 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0419 -0.7246 1.2498 5 7 3.5032 -0.8638 1.1447 6 6 4.3128 -0.4772 2.1505 7 8 5.5146 -0.6004 2.0430 8 6 3.7249 0.1079 3.4086 9 6 4.8345 0.4556 4.3672 10 6 5.5436 1.6025 4.3734 11 6 6.4760 1.5163 5.4261 12 6 6.3015 0.3197 6.0228 13 7 5.2916 -0.3336 5.3808 14 1 4.9553 -1.2151 5.6064 15 6 4.0527 -1.4389 -0.0952 16 6 3.4243 -0.7147 -1.2813 17 6 3.8389 -1.4004 -2.6021 18 6 3.7413 -0.2201 -3.6058 19 7 4.2037 0.9577 -2.8480 20 6 4.7295 2.1000 -3.3902 21 1 5.2724 2.7939 -2.7656 22 6 4.5645 2.3659 -4.7425 23 7 5.3812 3.1974 -5.3540 24 14 3.1834 1.5438 -5.6945 25 1 3.6243 0.1988 -6.1437 26 1 1.9918 1.4073 -4.8190 27 1 2.8365 2.3717 -6.8775 28 6 4.0004 0.7040 -1.4125 29 8 2.0089 -0.6767 -1.1664 30 1 -0.3633 0.5123 0.8908 31 1 -0.3634 0.5155 -0.8891 32 1 -0.3633 -1.0276 -0.0019 33 1 1.5839 -1.7116 1.3142 34 1 1.7925 -0.1436 2.1377 35 1 3.1625 1.0086 3.1621 36 1 3.0593 -0.6206 3.8716 37 1 5.4196 2.4343 3.6957 38 1 7.1978 2.2701 5.7039 39 1 6.8617 -0.0545 6.8669 40 1 3.8131 -2.5011 -0.1447 41 1 5.1343 -1.3054 -0.1145 42 1 4.8578 -1.7828 -2.5410 43 1 3.1408 -2.1949 -2.8659 44 1 2.7106 -0.0806 -3.9316 45 1 4.3902 -0.3977 -4.4635 46 1 5.2657 3.3837 -6.2990 47 1 4.9525 0.7683 -0.8858 48 1 3.2998 1.4315 -1.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071244146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:38 Heat of formation + Delta-G solvation = 13.427813 kcal Electronic energy + Delta-G solvation = -30075.595593 eV Core-core repulsion = 26132.868705 eV Total energy + Delta-G solvation = -3942.726887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31933 -40.59544 -38.77629 -36.66879 -34.72954 -33.31456 -32.11184 -31.61425 -30.98659 -29.76380 -28.77221 -27.04650 -26.69632 -25.45199 -23.50614 -21.95325 -21.03506 -20.77398 -20.42860 -19.80169 -18.96214 -17.65179 -17.36346 -17.12643 -16.52129 -15.94772 -15.62111 -15.19897 -14.74622 -14.48168 -14.31989 -14.07487 -13.83781 -13.56575 -13.48125 -13.27266 -13.23834 -12.85151 -12.63227 -12.47713 -12.29744 -12.25333 -12.14584 -11.94341 -11.76169 -11.66967 -11.34064 -11.20381 -11.14746 -10.92399 -10.52892 -10.05563 -9.98664 -9.81025 -9.72621 -9.36762 -8.88452 -8.70269 -8.48950 -8.10802 -7.01793 -5.89093 -3.19511 2.07772 2.53159 2.76406 3.06307 3.22113 3.37574 3.51513 3.54809 3.65575 4.38289 4.51289 4.57021 4.58768 4.73613 4.77980 4.85307 4.93641 5.05296 5.08923 5.12293 5.16585 5.21928 5.28056 5.41126 5.46902 5.47341 5.50223 5.63474 5.67284 5.76820 5.87021 5.89373 6.01770 6.06937 6.17170 6.18020 6.26474 6.28345 6.42567 6.51714 6.63896 6.77640 6.91799 7.05314 7.23519 7.44540 7.48765 7.71068 8.08322 8.35065 8.86607 9.72902 10.20121 11.27025 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003461 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.666354 B = 8088.159313 C = 9098.581769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.072 0.928 4 C 0.079 3.921 5 N -0.616 5.616 6 C 0.515 3.485 7 O -0.521 6.521 8 C -0.069 4.069 9 C 0.029 3.971 10 C -0.176 4.176 11 C -0.199 4.199 12 C -0.014 4.014 13 N -0.554 5.554 14 H 0.410 0.590 15 C 0.100 3.900 16 C 0.093 3.907 17 C -0.115 4.115 18 C 0.110 3.890 19 N -0.606 5.606 20 C -0.239 4.239 21 H 0.092 0.908 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.275 1.275 27 H -0.304 1.304 28 C 0.122 3.878 29 O -0.356 6.356 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.263 0.737 47 H 0.041 0.959 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 -11.114 21.800 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.090 0.910 4 C -0.044 4.044 5 N -0.350 5.350 6 C 0.302 3.698 7 O -0.395 6.395 8 C -0.110 4.110 9 C -0.084 4.084 10 C -0.201 4.201 11 C -0.224 4.224 12 C -0.145 4.145 13 N -0.149 5.149 14 H 0.245 0.755 15 C -0.022 4.022 16 C 0.052 3.948 17 C -0.154 4.154 18 C -0.015 4.015 19 N -0.333 5.333 20 C -0.366 4.366 21 H 0.110 0.890 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.716 3.284 25 H -0.212 1.212 26 H -0.200 1.200 27 H -0.232 1.232 28 C -0.003 4.003 29 O -0.275 6.275 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.052 -11.211 21.479 25.532 hybrid contribution -0.838 -0.588 -0.383 1.093 sum -8.890 -11.799 21.096 25.755 Atomic orbital electron populations 1.21700 0.92318 1.02914 1.02952 1.22501 0.95337 0.96511 0.84876 0.91011 1.22522 0.80222 1.01886 0.99794 1.48199 1.06672 1.63274 1.16888 1.20534 0.86923 0.77999 0.84350 1.90758 1.14387 1.53896 1.80496 1.20135 0.95958 1.03090 0.91780 1.19465 1.01656 0.93214 0.94022 1.20690 0.99397 0.98439 1.01532 1.20888 1.03440 0.98172 0.99897 1.21752 0.95568 0.95168 1.01994 1.41845 1.29761 1.16908 1.26427 0.75479 1.22181 1.00915 0.96939 0.82196 1.22280 0.81072 0.96683 0.94770 1.22733 1.01371 0.98205 0.93062 1.22086 0.98131 0.86301 0.94986 1.44789 1.73970 1.14515 1.00042 1.18656 1.26970 0.97627 0.93382 0.89004 1.24932 0.98891 0.97807 0.96215 1.69833 1.36420 1.39009 1.10267 0.86991 0.84545 0.77901 0.78950 1.21233 1.20040 1.23218 1.21770 0.97899 0.92808 0.87871 1.87857 1.20220 1.76877 1.42505 0.90991 0.91155 0.91778 0.90480 0.89032 0.86715 0.88577 0.84826 0.84782 0.82078 0.90916 0.87698 0.89521 0.90313 0.94840 0.92005 0.92754 0.94107 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.96 16 2 C 0.07 0.80 3.17 -26.59 -0.08 0.72 16 3 H 0.07 0.99 6.22 -51.92 -0.32 0.67 16 4 C 0.08 0.74 5.81 -3.54 -0.02 0.72 16 5 N -0.62 -7.65 2.94 -172.62 -0.51 -8.16 16 6 C 0.51 6.83 7.71 -10.99 -0.08 6.75 16 7 O -0.52 -9.22 15.52 5.55 0.09 -9.14 16 8 C -0.07 -0.64 4.61 -29.04 -0.13 -0.78 16 9 C 0.03 0.33 5.66 -81.79 -0.46 -0.13 16 10 C -0.18 -2.27 10.76 -39.78 -0.43 -2.70 16 11 C -0.20 -2.33 10.86 -39.78 -0.43 -2.76 16 12 C -0.01 -0.14 11.94 -16.75 -0.20 -0.34 16 13 N -0.55 -5.28 6.07 -9.12 -0.06 -5.34 16 14 H 0.41 2.67 8.96 -40.82 -0.37 2.31 16 15 C 0.10 1.44 5.20 -3.85 -0.02 1.42 16 16 C 0.09 1.55 0.81 -89.73 -0.07 1.48 16 17 C -0.11 -1.98 6.22 -24.76 -0.15 -2.14 16 18 C 0.11 2.47 4.68 -2.31 -0.01 2.46 16 19 N -0.61 -15.26 3.25 -170.08 -0.55 -15.81 16 20 C -0.24 -7.03 10.60 -15.06 -0.16 -7.19 16 21 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 22 C 0.02 0.59 5.45 -17.43 -0.09 0.49 16 23 N -0.91 -28.77 13.97 55.49 0.78 -27.99 16 24 Si 0.89 23.19 24.23 -169.99 -4.12 19.07 16 25 H -0.29 -7.14 6.39 56.52 0.36 -6.78 16 26 H -0.27 -7.14 6.45 56.52 0.36 -6.77 16 27 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 28 C 0.12 2.55 6.32 -3.32 -0.02 2.53 16 29 O -0.36 -5.67 9.90 -35.23 -0.35 -6.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 35 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 36 H 0.10 0.59 8.01 -51.93 -0.42 0.17 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.70 6.84 -51.93 -0.35 1.35 16 42 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.03 0.80 5.54 -51.93 -0.29 0.51 16 45 H 0.06 1.47 6.25 -51.93 -0.32 1.14 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 47 H 0.04 0.90 7.61 -51.93 -0.40 0.50 16 48 H 0.03 0.70 6.01 -51.93 -0.31 0.39 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -37.38 371.80 -8.49 -45.87 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.35 Total: 2.33 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.02 Total: -0.42 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.34 Total: -57.30 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.26 Total: -15.16 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.12 Total: 19.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.38 -8.49 -45.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071244146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.298 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds