Wall clock time and date at job start Tue Mar 31 2020 17:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51371 * 2 1 4 4 C 1.53268 * 109.51274 * 120.10459 * 2 1 3 5 5 N 1.47167 * 108.55088 * 172.87253 * 4 2 1 6 6 C 1.34777 * 121.06798 * 128.85049 * 5 4 2 7 7 O 1.21287 * 119.99979 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00197 * 0.02562 * 6 5 4 9 9 C 1.50697 * 109.47340 * 180.02562 * 8 6 5 10 10 C 1.34850 * 125.89613 * 84.99881 * 9 8 6 11 11 C 1.40890 * 107.41886 * 180.02562 * 10 9 8 12 12 C 1.34846 * 107.41984 * 0.02562 * 11 10 9 13 13 N 1.36341 * 108.21672 * 359.73550 * 12 11 10 14 14 H 0.97008 * 125.63751 * 180.26220 * 13 12 11 15 15 C 1.47306 * 117.86550 * 308.86384 * 5 4 2 16 16 C 1.52520 * 108.39555 * 49.39853 * 15 5 4 17 17 C 1.54487 * 110.09517 * 186.95471 * 16 15 5 18 18 C 1.55249 * 101.44101 * 206.80711 * 17 16 15 19 19 N 1.47487 * 104.78814 * 36.64952 * 18 17 16 20 20 C 1.36939 * 125.66309 * 155.93083 * 19 18 17 21 21 H 1.08001 * 120.00015 * 196.00569 * 20 19 18 22 22 C 1.38812 * 119.99593 * 16.01309 * 20 19 18 23 23 N 1.31617 * 119.99629 * 201.20940 * 22 20 19 24 24 Si 1.86798 * 120.00262 * 21.21092 * 22 20 19 25 25 H 1.48505 * 109.46756 * 275.67738 * 24 22 20 26 26 H 1.48497 * 109.47027 * 35.67374 * 24 22 20 27 27 H 1.48496 * 109.47358 * 155.67976 * 24 22 20 28 28 C 1.47181 * 108.67465 * 335.67485 * 19 18 17 29 29 O 1.42064 * 111.11578 * 309.56873 * 16 15 5 30 30 H 1.08996 * 109.47232 * 299.90196 * 1 2 3 31 31 H 1.09007 * 109.47166 * 59.89757 * 1 2 3 32 32 H 1.08994 * 109.46938 * 179.89285 * 1 2 3 33 33 H 1.08997 * 109.62770 * 53.15136 * 4 2 1 34 34 H 1.09002 * 109.62072 * 292.58210 * 4 2 1 35 35 H 1.09002 * 109.47164 * 300.00769 * 8 6 5 36 36 H 1.08998 * 109.46947 * 60.00207 * 8 6 5 37 37 H 1.07999 * 126.28377 * 0.02562 * 10 9 8 38 38 H 1.08005 * 126.28489 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.88905 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.67599 * 289.67242 * 15 5 4 41 41 H 1.09001 * 109.71061 * 169.14846 * 15 5 4 42 42 H 1.09001 * 111.01705 * 325.04133 * 17 16 15 43 43 H 1.09000 * 111.01334 * 88.87660 * 17 16 15 44 44 H 1.08998 * 110.48448 * 277.79146 * 18 17 16 45 45 H 1.09001 * 110.32829 * 155.42862 * 18 17 16 46 46 H 0.97002 * 120.00167 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.90681 * 121.11024 * 28 19 18 48 48 H 1.08997 * 109.90297 * 242.18084 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0419 -0.7246 1.2498 5 7 3.5032 -0.8638 1.1447 6 6 4.3128 -0.4772 2.1505 7 8 5.5146 -0.6004 2.0430 8 6 3.7249 0.1079 3.4086 9 6 4.8345 0.4556 4.3672 10 6 5.5436 1.6025 4.3734 11 6 6.4760 1.5163 5.4261 12 6 6.3015 0.3197 6.0228 13 7 5.2916 -0.3336 5.3808 14 1 4.9553 -1.2151 5.6064 15 6 4.0527 -1.4389 -0.0952 16 6 3.4243 -0.7147 -1.2813 17 6 3.8389 -1.4004 -2.6021 18 6 3.7413 -0.2201 -3.6058 19 7 4.2037 0.9577 -2.8480 20 6 4.7295 2.1000 -3.3902 21 1 5.2724 2.7939 -2.7656 22 6 4.5645 2.3659 -4.7425 23 7 5.3812 3.1974 -5.3540 24 14 3.1834 1.5438 -5.6945 25 1 3.6243 0.1988 -6.1437 26 1 1.9918 1.4073 -4.8190 27 1 2.8365 2.3717 -6.8775 28 6 4.0004 0.7040 -1.4125 29 8 2.0089 -0.6767 -1.1664 30 1 -0.3633 0.5123 0.8908 31 1 -0.3634 0.5155 -0.8891 32 1 -0.3633 -1.0276 -0.0019 33 1 1.5839 -1.7116 1.3142 34 1 1.7925 -0.1436 2.1377 35 1 3.1625 1.0086 3.1621 36 1 3.0593 -0.6206 3.8716 37 1 5.4196 2.4343 3.6957 38 1 7.1978 2.2701 5.7039 39 1 6.8617 -0.0545 6.8669 40 1 3.8131 -2.5011 -0.1447 41 1 5.1343 -1.3054 -0.1145 42 1 4.8578 -1.7828 -2.5410 43 1 3.1408 -2.1949 -2.8659 44 1 2.7106 -0.0806 -3.9316 45 1 4.3902 -0.3977 -4.4635 46 1 5.2657 3.3837 -6.2990 47 1 4.9525 0.7683 -0.8858 48 1 3.2998 1.4315 -1.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071244146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:37 Heat of formation + Delta-G solvation = -14.434330 kcal Electronic energy + Delta-G solvation = -30076.803786 eV Core-core repulsion = 26132.868705 eV Total energy + Delta-G solvation = -3943.935081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19615 -41.67752 -39.96564 -38.14622 -35.83468 -34.93320 -33.48409 -32.84567 -31.80527 -31.28064 -30.21786 -28.35646 -27.53059 -26.79661 -25.04127 -23.27304 -22.63372 -21.64191 -21.35359 -20.85610 -20.07964 -19.10229 -18.49038 -18.30160 -17.87741 -17.30262 -16.90120 -16.54978 -16.12300 -15.91799 -15.53373 -15.26573 -15.02873 -14.77361 -14.53719 -14.41092 -14.28460 -14.13826 -13.95549 -13.60005 -13.52420 -13.39631 -13.17004 -13.11703 -13.02869 -12.88229 -12.76099 -12.58093 -12.52060 -12.24871 -12.01864 -11.86633 -11.64112 -11.45804 -11.02054 -10.90134 -10.84604 -9.72306 -9.56335 -9.14860 -8.93036 -8.22511 -5.50595 1.23531 1.26436 1.35627 1.45575 1.55928 1.87202 2.16798 2.36644 2.51555 2.54231 2.98536 3.15799 3.52149 3.53057 3.63439 3.70479 3.82238 3.94071 4.05681 4.15816 4.20076 4.28785 4.37422 4.40434 4.46414 4.50225 4.58279 4.62748 4.64048 4.64674 4.72207 4.76581 4.85480 4.86184 4.90639 4.99263 5.10306 5.13092 5.28237 5.35255 5.36568 5.41423 5.56356 6.03168 6.06674 6.19852 6.25918 6.31119 6.67298 6.83692 7.10293 7.46140 8.01291 8.97447 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003461 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.666354 B = 8088.159313 C = 9098.581769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 H 0.045 0.955 4 C 0.082 3.918 5 N -0.615 5.615 6 C 0.511 3.489 7 O -0.575 6.575 8 C -0.062 4.062 9 C 0.023 3.977 10 C -0.216 4.216 11 C -0.232 4.232 12 C -0.004 4.004 13 N -0.545 5.545 14 H 0.426 0.574 15 C 0.107 3.893 16 C 0.108 3.892 17 C -0.105 4.105 18 C 0.101 3.899 19 N -0.625 5.625 20 C -0.241 4.241 21 H 0.052 0.948 22 C -0.037 4.037 23 N -0.957 5.957 24 Si 0.955 3.045 25 H -0.264 1.264 26 H -0.271 1.271 27 H -0.305 1.305 28 C 0.123 3.877 29 O -0.368 6.368 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.196 0.804 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.029 0.971 45 H 0.047 0.953 46 H 0.264 0.736 47 H 0.019 0.981 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 -14.589 23.932 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.004 4.004 3 H 0.063 0.937 4 C -0.039 4.039 5 N -0.349 5.349 6 C 0.300 3.700 7 O -0.454 6.454 8 C -0.101 4.101 9 C -0.091 4.091 10 C -0.241 4.241 11 C -0.257 4.257 12 C -0.136 4.136 13 N -0.141 5.141 14 H 0.265 0.735 15 C -0.016 4.016 16 C 0.067 3.933 17 C -0.143 4.143 18 C -0.023 4.023 19 N -0.352 5.352 20 C -0.370 4.370 21 H 0.069 0.931 22 C -0.231 4.231 23 N -0.604 5.604 24 Si 0.783 3.217 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.234 1.234 28 C -0.002 4.002 29 O -0.287 6.287 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.213 0.787 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.229 -14.732 23.645 30.037 hybrid contribution 0.186 0.596 -0.964 1.148 sum -11.043 -14.137 22.681 28.918 Atomic orbital electron populations 1.21715 0.89789 1.04114 1.03534 1.22829 0.97256 0.95260 0.85063 0.93696 1.22770 0.77874 1.03740 0.99562 1.48309 1.08153 1.62552 1.15877 1.21246 0.86325 0.77006 0.85419 1.90740 1.16861 1.56115 1.81678 1.20234 0.95728 1.04741 0.89446 1.19696 1.01953 0.92850 0.94557 1.20863 1.01255 0.99433 1.02549 1.21150 1.04181 0.99744 1.00611 1.22262 0.95000 0.94271 1.02074 1.41887 1.29253 1.17368 1.25628 0.73528 1.21965 0.99298 0.98203 0.82181 1.22004 0.81995 0.93427 0.95850 1.22734 1.03262 0.96879 0.91410 1.22192 0.97002 0.87224 0.95870 1.44890 1.73891 1.14220 1.02215 1.18549 1.26485 0.98627 0.93298 0.93057 1.25621 1.00989 0.99279 0.97221 1.69966 1.38186 1.41487 1.10755 0.85867 0.80926 0.77758 0.77130 1.18922 1.19632 1.23380 1.21864 0.96963 0.96181 0.85233 1.87840 1.18959 1.77133 1.44805 0.87724 0.93346 0.90176 0.87601 0.85275 0.84997 0.84051 0.86354 0.84404 0.78692 0.87870 0.90278 0.88372 0.86837 0.95303 0.93517 0.92672 0.96312 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.57 71.98 0.69 -1.31 16 2 C 0.05 1.15 3.17 30.68 0.10 1.25 16 3 H 0.05 1.20 6.22 -2.38 -0.01 1.19 16 4 C 0.08 1.15 5.81 86.34 0.50 1.66 16 5 N -0.62 -13.65 2.94 -818.44 -2.41 -16.06 16 6 C 0.51 12.69 7.71 87.66 0.68 13.37 16 7 O -0.58 -20.52 15.52 -3.05 -0.05 -20.56 16 8 C -0.06 -0.96 4.61 29.10 0.13 -0.82 16 9 C 0.02 0.49 5.66 41.08 0.23 0.72 16 10 C -0.22 -5.74 10.76 22.14 0.24 -5.50 16 11 C -0.23 -5.48 10.86 22.14 0.24 -5.24 16 12 C 0.00 -0.08 11.94 83.21 0.99 0.92 16 13 N -0.55 -9.11 6.07 -182.77 -1.11 -10.22 16 14 H 0.43 4.12 8.96 -92.70 -0.83 3.28 16 15 C 0.11 2.85 5.20 86.07 0.45 3.30 16 16 C 0.11 3.48 0.81 -10.22 -0.01 3.47 16 17 C -0.10 -3.37 6.22 31.87 0.20 -3.18 16 18 C 0.10 4.48 4.68 86.96 0.41 4.89 16 19 N -0.63 -32.40 3.25 -692.02 -2.25 -34.65 16 20 C -0.24 -14.91 10.60 84.03 0.89 -14.02 16 21 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 22 C -0.04 -2.28 5.45 84.86 0.46 -1.81 16 23 N -0.96 -62.92 13.97 21.65 0.30 -62.62 16 24 Si 0.96 48.95 24.23 68.60 1.66 50.61 16 25 H -0.26 -12.50 6.39 99.48 0.64 -11.87 16 26 H -0.27 -13.57 6.45 99.48 0.64 -12.93 16 27 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 28 C 0.12 5.29 6.32 86.48 0.55 5.84 16 29 O -0.37 -10.77 9.90 -148.97 -1.48 -12.25 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.13 0.87 6.05 -2.39 -0.01 0.85 16 35 H 0.13 1.62 7.67 -2.39 -0.02 1.60 16 36 H 0.14 0.92 8.01 -2.39 -0.02 0.90 16 37 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 2.56 6.84 -2.39 -0.02 2.55 16 42 H 0.10 2.94 8.01 -2.39 -0.02 2.92 16 43 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.03 1.33 5.54 -2.39 -0.01 1.31 16 45 H 0.05 2.19 6.25 -2.39 -0.01 2.17 16 46 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 47 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 48 H 0.03 1.13 6.01 -2.39 -0.01 1.12 16 Total: -1.00 -88.61 371.80 1.44 -87.17 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.01 Total: 15.04 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.75 Total: 3.53 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.46 Total: -123.54 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.52 Total: -32.81 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.66 Total: 50.61 kcal Total: -88.61 1.44 -87.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071244146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.740 kcal (2) G-P(sol) polarization free energy of solvation -88.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds