Wall clock time and date at job start Tue Mar 31 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 O 1.42896 * 109.47176 * 119.99957 * 2 1 3 5 5 C 1.35662 * 117.00232 * 86.33892 * 4 2 1 6 6 C 1.38941 * 120.57802 * 354.36847 * 5 4 2 7 7 N 1.31628 * 120.79374 * 179.97438 * 6 5 4 8 8 C 1.31907 * 122.14587 * 0.02562 * 7 6 5 9 9 C 1.37963 * 121.07492 * 359.97438 * 8 7 6 10 10 C 1.39952 * 119.07122 * 359.73905 * 9 8 7 11 11 C 1.47839 * 120.96679 * 180.29869 * 10 9 8 12 12 O 1.21541 * 120.00158 * 180.22291 * 11 10 9 13 13 N 1.34781 * 119.99802 * 0.22659 * 11 10 9 14 14 C 1.46497 * 119.99866 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.88580 * 31.12145 * 14 13 11 16 16 C 1.54908 * 111.00167 * 267.19396 * 14 13 11 17 17 N 1.47436 * 104.82926 * 204.91911 * 16 14 13 18 18 C 1.36931 * 125.64495 * 204.15260 * 17 16 14 19 19 H 1.08008 * 120.00160 * 158.24520 * 18 17 16 20 20 C 1.38818 * 120.00424 * 338.24430 * 18 17 16 21 21 N 1.31617 * 120.00306 * 158.98224 * 20 18 17 22 22 Si 1.86800 * 119.99496 * 338.97621 * 20 18 17 23 23 H 1.48497 * 109.47071 * 84.19065 * 22 20 18 24 24 H 1.48502 * 109.46840 * 204.18941 * 22 20 18 25 25 H 1.48502 * 109.47401 * 324.18906 * 22 20 18 26 26 C 1.47017 * 108.70350 * 24.12447 * 17 16 14 27 27 C 1.54324 * 107.27152 * 358.94573 * 26 17 16 28 28 H 1.09002 * 110.87486 * 96.23786 * 27 26 17 29 29 C 1.52999 * 110.71827 * 219.43729 * 27 26 17 30 30 H 1.08994 * 109.47388 * 299.99793 * 1 2 3 31 31 H 1.09001 * 109.47224 * 60.00255 * 1 2 3 32 32 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47259 * 239.99943 * 2 1 3 34 34 H 1.09001 * 109.47364 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46914 * 299.99935 * 3 2 1 36 36 H 1.09002 * 109.47151 * 59.99878 * 3 2 1 37 37 H 1.08000 * 119.60374 * 359.97438 * 6 5 4 38 38 H 1.08003 * 119.46029 * 180.02562 * 8 7 6 39 39 H 1.07999 * 120.46502 * 180.02562 * 9 8 7 40 40 H 0.97002 * 120.00003 * 359.97438 * 13 11 10 41 41 H 1.08998 * 110.36746 * 323.75199 * 16 14 13 42 42 H 1.09003 * 110.36780 * 86.08300 * 16 14 13 43 43 H 0.96994 * 119.99923 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.88513 * 239.52625 * 26 17 16 45 45 H 1.09007 * 109.88046 * 118.35766 * 26 17 16 46 46 H 1.09000 * 109.47253 * 173.51839 * 29 27 26 47 47 H 1.09002 * 109.47583 * 293.52149 * 29 27 26 48 48 H 1.09006 * 109.47264 * 53.52508 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1388 -2.0215 1.0888 6 6 1.7114 -2.7097 -0.0400 7 7 1.8384 -4.0173 -0.1203 8 6 2.3699 -4.7319 0.8527 9 6 2.8219 -4.1335 2.0107 10 6 2.7157 -2.7444 2.1445 11 6 3.1926 -2.0590 3.3645 12 8 3.0881 -0.8522 3.4638 13 7 3.7433 -2.7725 4.3666 14 6 4.2164 -2.0933 5.5753 15 1 3.6181 -1.2058 5.7817 16 6 5.7193 -1.7362 5.4593 17 7 6.1957 -1.6521 6.8521 18 6 7.2812 -0.9368 7.2823 19 1 7.3580 -0.6430 8.3188 20 6 8.2829 -0.5892 6.3864 21 7 9.0922 0.4121 6.6599 22 14 8.4825 -1.5428 4.7925 23 1 7.5525 -0.9988 3.7706 24 1 9.8805 -1.4120 4.3092 25 1 8.1731 -2.9755 5.0308 26 6 5.3120 -2.4629 7.7024 27 6 4.2182 -3.0578 6.7906 28 1 4.4795 -4.0693 6.4798 29 6 2.8600 -3.0439 7.4948 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.2696 -2.1651 -0.8614 38 1 2.4534 -5.8029 0.7407 39 1 3.2558 -4.7281 2.8010 40 1 3.8264 -3.7357 4.2875 41 1 6.2548 -2.5188 4.9219 42 1 5.8437 -0.7767 4.9573 43 1 9.7918 0.6552 6.0337 44 1 4.8557 -1.8351 8.4677 45 1 5.8819 -3.2659 8.1700 46 1 2.0852 -3.3594 6.7961 47 1 2.8838 -3.7272 8.3437 48 1 2.6432 -2.0351 7.8463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080189912.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:25 Heat of formation + Delta-G solvation = -8.026524 kcal Electronic energy + Delta-G solvation = -29454.304252 eV Core-core repulsion = 25510.647035 eV Total energy + Delta-G solvation = -3943.657217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23587 -39.54820 -38.67639 -37.73805 -34.21294 -33.77081 -32.97289 -32.12873 -31.02786 -30.48510 -28.13209 -27.59687 -26.15863 -25.12504 -24.12269 -23.11863 -21.65963 -21.15022 -20.51831 -19.97363 -18.65421 -17.62165 -17.21537 -16.85614 -15.98509 -15.92002 -15.70272 -15.13801 -14.99643 -14.58163 -14.45552 -14.23446 -13.94644 -13.76102 -13.44519 -13.32786 -13.13144 -12.99822 -12.89573 -12.66126 -12.40013 -12.17651 -12.10890 -12.01128 -11.81828 -11.37008 -11.27862 -11.18264 -11.13153 -10.69082 -10.44714 -10.34061 -10.21147 -10.02862 -9.99127 -9.56331 -9.46636 -8.85105 -8.70552 -8.59571 -7.01443 -5.94178 -3.27022 0.47267 0.82848 2.77398 2.89688 3.09665 3.39088 3.47499 3.49842 3.62206 4.06600 4.27941 4.38437 4.44366 4.52064 4.56547 4.61070 4.71605 4.83632 4.90093 5.02651 5.08065 5.18027 5.22167 5.23172 5.34957 5.43040 5.46470 5.51085 5.51286 5.56710 5.72581 5.75228 5.80017 5.87651 5.93432 5.97750 6.12688 6.14243 6.26622 6.40590 6.54483 6.64348 6.76154 6.80437 7.01282 7.55395 7.58591 7.74009 8.30717 8.32783 8.83991 9.69450 10.17813 11.22019 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003592 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.186581 B = 7792.671426 C = 8473.451980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.266 6.266 5 C 0.138 3.862 6 C 0.009 3.991 7 N -0.434 5.434 8 C 0.049 3.951 9 C -0.100 4.100 10 C -0.126 4.126 11 C 0.556 3.444 12 O -0.505 6.505 13 N -0.714 5.714 14 C 0.135 3.865 15 H 0.104 0.896 16 C 0.106 3.894 17 N -0.606 5.606 18 C -0.244 4.244 19 H 0.093 0.907 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.277 1.277 26 C 0.141 3.859 27 C -0.111 4.111 28 H 0.077 0.923 29 C -0.138 4.138 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.395 0.605 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 -8.907 -13.291 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.176 6.176 5 C 0.087 3.913 6 C -0.150 4.150 7 N -0.144 5.144 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.137 4.137 11 C 0.341 3.659 12 O -0.379 6.379 13 N -0.366 5.366 14 C 0.030 3.970 15 H 0.122 0.878 16 C -0.020 4.020 17 N -0.333 5.333 18 C -0.371 4.371 19 H 0.110 0.890 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.203 1.203 26 C 0.015 3.985 27 C -0.131 4.131 28 H 0.096 0.904 29 C -0.195 4.195 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.163 0.837 40 H 0.230 0.770 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.199 -8.097 -13.761 24.970 hybrid contribution 0.629 -0.734 -0.484 1.081 sum -18.571 -8.831 -14.244 25.015 Atomic orbital electron populations 1.22392 0.94658 1.03014 1.03649 1.22640 0.94618 0.94510 0.87054 1.21841 1.02589 0.92902 1.03205 1.86459 1.78958 1.14650 1.37550 1.20137 0.92561 0.84821 0.93748 1.23017 1.03618 0.91044 0.97360 1.67355 1.10664 1.06861 1.29502 1.22549 0.98105 1.00577 0.89460 1.22281 0.97412 0.92891 0.99422 1.19960 1.04445 0.93520 0.95805 1.17855 0.78439 0.87094 0.82471 1.90856 1.54544 1.13100 1.79404 1.45818 1.62141 1.10605 1.18004 1.22370 0.96413 0.95881 0.82325 0.87767 1.22263 0.91029 0.99906 0.88800 1.44632 1.31213 1.55370 1.02123 1.18625 0.94926 1.26368 0.97150 0.88971 1.25059 0.96549 0.97865 0.97805 1.69821 1.21282 1.26398 1.37514 0.86958 0.75852 0.81249 0.84733 1.21160 1.22950 1.20304 1.21433 0.90253 0.93617 0.93197 1.22468 0.96330 0.98691 0.95603 0.90442 1.21739 0.95593 1.02266 0.99928 0.90968 0.90656 0.92026 0.90836 0.91334 0.90446 0.90956 0.81809 0.81915 0.83688 0.77007 0.95652 0.91960 0.92657 0.94366 0.94766 0.92984 0.92453 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.21 37.16 0.34 -1.02 16 2 C 0.07 0.65 2.84 -26.73 -0.08 0.57 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.99 16 4 O -0.27 -3.70 8.03 -39.88 -0.32 -4.02 16 5 C 0.14 1.81 6.65 -38.53 -0.26 1.55 16 6 C 0.01 0.10 9.50 -17.38 -0.17 -0.06 16 7 N -0.43 -4.80 10.32 -13.17 -0.14 -4.93 16 8 C 0.05 0.46 11.16 -17.62 -0.20 0.26 16 9 C -0.10 -0.98 9.61 -39.04 -0.38 -1.36 16 10 C -0.13 -1.69 5.92 -104.53 -0.62 -2.30 16 11 C 0.56 9.13 7.79 -12.33 -0.10 9.03 16 12 O -0.50 -10.33 14.95 -15.86 -0.24 -10.56 16 13 N -0.71 -10.50 5.16 -52.68 -0.27 -10.77 16 14 C 0.14 2.39 2.87 -65.79 -0.19 2.20 16 15 H 0.10 2.02 7.44 -51.93 -0.39 1.63 16 16 C 0.11 2.42 4.40 -2.52 -0.01 2.41 16 17 N -0.61 -14.90 3.17 -170.06 -0.54 -15.44 16 18 C -0.24 -7.05 10.57 -15.06 -0.16 -7.21 16 19 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 20 C 0.03 0.78 5.44 -17.43 -0.09 0.69 16 21 N -0.91 -28.56 13.97 55.49 0.78 -27.79 16 22 Si 0.88 23.39 24.29 -169.99 -4.13 19.26 16 23 H -0.28 -7.55 6.57 56.52 0.37 -7.18 16 24 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 25 H -0.28 -7.12 6.72 56.52 0.38 -6.74 16 26 C 0.14 2.72 6.84 -3.07 -0.02 2.69 16 27 C -0.11 -1.68 3.20 -88.79 -0.28 -1.97 16 28 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 29 C -0.14 -1.68 9.16 37.16 0.34 -1.34 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 7.08 -51.93 -0.37 0.09 16 33 H 0.07 0.58 6.25 -51.93 -0.32 0.25 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.16 1.36 5.51 -52.49 -0.29 1.07 16 38 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.15 0.99 6.53 -52.49 -0.34 0.65 16 40 H 0.40 4.40 6.70 -40.82 -0.27 4.12 16 41 H 0.03 0.60 5.50 -51.93 -0.29 0.31 16 42 H 0.06 1.61 6.93 -51.93 -0.36 1.25 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.04 0.73 7.76 -51.93 -0.40 0.32 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -36.43 380.33 -7.91 -44.34 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.28 Total: 1.02 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.50 Total: 3.16 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.17 Total: -58.93 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.56 Total: -14.58 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.13 Total: 19.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.43 -7.91 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080189912.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.313 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds