Wall clock time and date at job start Tue Mar 31 2020 17:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.50704 * 109.47274 * 119.99546 * 2 1 3 5 5 C 1.38353 * 119.40762 * 275.23828 * 4 2 1 6 6 C 1.38336 * 119.45920 * 180.27396 * 5 4 2 7 7 C 1.39993 * 118.34846 * 359.49633 * 6 5 4 8 8 C 1.47521 * 120.60146 * 180.27290 * 7 6 5 9 9 O 1.21583 * 120.00346 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99668 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88726 * 31.11279 * 11 10 8 13 13 C 1.54914 * 111.00235 * 267.19989 * 11 10 8 14 14 N 1.47424 * 104.82735 * 204.91541 * 13 11 10 15 15 C 1.36941 * 125.64661 * 204.14390 * 14 13 11 16 16 H 1.08000 * 119.99915 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99850 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99639 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46685 * 119.99934 * 19 17 15 22 22 H 1.48502 * 109.46653 * 239.99422 * 19 17 15 23 23 C 1.47013 * 108.70711 * 24.12599 * 14 13 11 24 24 C 1.54323 * 107.27080 * 358.93902 * 23 14 13 25 25 H 1.09007 * 110.87074 * 96.24689 * 24 23 14 26 26 C 1.53004 * 110.72209 * 219.43971 * 24 23 14 27 27 C 1.40280 * 118.80139 * 0.25561 * 7 6 5 28 28 O 1.35431 * 119.80035 * 180.02562 * 27 7 6 29 29 N 1.31877 * 119.40470 * 94.99708 * 4 2 1 30 30 H 1.08995 * 109.47246 * 300.00241 * 1 2 3 31 31 H 1.09004 * 109.47094 * 60.00212 * 1 2 3 32 32 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47693 * 239.99948 * 2 1 3 34 34 H 1.08999 * 109.46861 * 59.99439 * 3 2 1 35 35 H 1.08999 * 109.47074 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46945 * 299.99880 * 3 2 1 37 37 H 1.08001 * 120.27163 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.83060 * 179.77809 * 6 5 4 39 39 H 0.97001 * 119.99945 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.36549 * 323.74587 * 13 11 10 41 41 H 1.08999 * 110.37219 * 86.07592 * 13 11 10 42 42 H 0.97002 * 119.99668 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.88615 * 239.52323 * 23 14 13 44 44 H 1.09004 * 110.01556 * 118.43163 * 23 14 13 45 45 H 1.08996 * 109.46786 * 173.51786 * 26 24 23 46 46 H 1.08995 * 109.47438 * 293.52493 * 26 24 23 47 47 H 1.09005 * 109.46577 * 53.52759 * 26 24 23 48 48 H 0.96700 * 113.99980 * 89.99606 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1551 -0.0094 2.4170 6 6 2.6215 -0.6589 3.5458 7 6 2.9446 -2.0173 3.4453 8 6 3.4407 -2.7602 4.6193 9 8 3.7176 -3.9399 4.5198 10 7 3.5858 -2.1313 5.8026 11 6 4.0779 -2.8691 6.9686 12 1 4.7633 -3.6610 6.6666 13 6 2.9026 -3.4389 7.8016 14 7 3.4437 -3.5879 9.1648 15 6 2.9755 -4.4510 10.1194 16 1 3.4430 -4.4851 11.0924 17 6 1.9002 -5.2820 9.8363 18 7 1.3303 -5.2399 8.6507 19 14 1.2621 -6.4598 11.1383 20 1 2.0696 -6.3143 12.3760 21 1 -0.1592 -6.1475 11.4343 22 1 1.3689 -7.8544 10.6391 23 6 4.5693 -2.6567 9.3297 24 6 4.7484 -1.9126 7.9897 25 1 4.2378 -0.9496 8.0090 26 6 6.2326 -1.7295 7.6662 27 6 2.7879 -2.6595 2.2080 28 8 3.0939 -3.9733 2.0880 29 7 2.3425 -1.9900 1.1582 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.8927 1.0374 2.4606 38 1 2.7294 -0.1324 4.4826 39 1 3.3638 -1.1904 5.8822 40 1 2.0641 -2.7425 7.8004 41 1 2.5932 -4.4072 7.4083 42 1 0.5786 -5.8203 8.4531 43 1 5.4767 -3.2108 9.5701 44 1 4.3498 -1.9429 10.1237 45 1 6.3372 -1.3072 6.6668 46 1 6.6828 -1.0551 8.3946 47 1 6.7351 -2.6960 7.7066 48 1 2.3530 -4.5679 2.2689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080562402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:19 Heat of formation + Delta-G solvation = -19.865593 kcal Electronic energy + Delta-G solvation = -28965.205585 eV Core-core repulsion = 25021.034987 eV Total energy + Delta-G solvation = -3944.170598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00734 -39.24184 -37.76809 -37.16482 -35.31624 -33.96113 -33.00573 -32.28803 -30.37387 -29.93763 -27.73433 -27.53459 -25.68566 -25.01113 -23.67106 -23.27586 -21.47077 -20.61750 -20.10853 -19.66120 -18.42202 -17.52843 -17.20586 -16.85703 -16.00518 -15.66343 -15.26799 -14.87081 -14.65390 -14.58338 -14.19252 -13.95456 -13.72680 -13.51151 -13.18874 -12.97017 -12.83301 -12.75964 -12.50642 -12.37155 -12.25752 -11.83700 -11.71983 -11.65879 -11.50807 -11.24778 -11.20649 -11.10464 -10.81288 -10.66088 -10.36385 -10.08137 -9.99867 -9.94940 -9.79053 -9.74154 -9.33729 -8.97599 -8.66045 -8.44989 -6.84555 -5.64180 -3.07620 0.48385 0.93864 2.94272 3.26336 3.40621 3.45623 3.48623 3.50045 3.73306 4.18104 4.37087 4.49189 4.63074 4.70125 4.76488 4.83564 4.90974 5.11093 5.22057 5.28975 5.29932 5.32541 5.42485 5.43744 5.51040 5.52708 5.59575 5.64902 5.73885 5.81402 5.88766 5.94704 5.96033 6.02360 6.14477 6.20695 6.26534 6.37300 6.46304 6.65350 6.76881 6.93140 7.42165 7.49854 7.62087 7.73034 7.81507 7.91016 8.36408 8.54233 9.20995 9.82315 10.45314 11.38846 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002806 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.613986 B = 9975.225752 C =10739.549243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.178 3.822 5 C -0.191 4.191 6 C -0.028 4.028 7 C -0.201 4.201 8 C 0.558 3.442 9 O -0.513 6.513 10 N -0.708 5.708 11 C 0.120 3.880 12 H 0.095 0.905 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.073 0.927 26 C -0.138 4.138 27 C 0.374 3.626 28 O -0.460 6.460 29 N -0.508 5.508 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.391 0.609 40 H 0.013 0.987 41 H 0.112 0.888 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 15.898 -15.708 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.039 3.961 5 C -0.211 4.211 6 C -0.054 4.054 7 C -0.207 4.207 8 C 0.343 3.657 9 O -0.388 6.388 10 N -0.359 5.359 11 C 0.015 3.985 12 H 0.113 0.887 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.353 4.353 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.015 3.985 24 C -0.131 4.131 25 H 0.091 0.909 26 C -0.195 4.195 27 C 0.193 3.807 28 O -0.268 6.268 29 N -0.227 5.227 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.225 0.775 40 H 0.031 0.969 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.738 14.529 -16.600 22.129 hybrid contribution -0.850 0.158 1.683 1.892 sum 0.888 14.687 -14.918 20.953 Atomic orbital electron populations 1.21809 0.93198 1.02614 1.02342 1.20147 0.96480 0.95481 0.94838 1.21943 1.01502 0.94577 1.02540 1.21155 0.91674 0.88337 0.94901 1.21886 1.04042 1.02066 0.93092 1.21741 0.92098 0.92458 0.99060 1.21269 1.08229 0.95830 0.95404 1.17725 0.78752 0.86883 0.82292 1.90841 1.48960 1.14783 1.84256 1.45764 1.67179 1.13414 1.09568 1.22741 0.98544 0.93674 0.83538 0.88734 1.22226 0.90104 1.01980 0.83371 1.44397 1.34458 1.42756 1.11325 1.19114 1.10961 1.12413 0.92833 0.90263 1.24822 0.98437 1.00099 0.97257 1.69810 1.25325 1.41584 1.19907 0.85996 0.78394 0.80718 0.80362 1.20500 1.21787 1.21675 1.21335 0.91910 0.91840 0.93406 1.22434 0.95691 0.98428 0.96558 0.90908 1.21745 0.95462 1.01771 1.00540 1.19143 0.88995 0.86466 0.86048 1.84695 1.39008 1.11320 1.91747 1.67101 1.13803 1.09663 1.32136 0.92256 0.91663 0.92129 0.88938 0.91915 0.92207 0.91623 0.83780 0.83963 0.77475 0.96948 0.87053 0.93747 0.95426 0.95864 0.93143 0.92856 0.92402 0.73220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.18 37.16 0.34 -0.61 16 2 C -0.05 -0.39 3.22 -91.77 -0.30 -0.68 16 3 C -0.15 -0.82 8.62 37.16 0.32 -0.50 16 4 C 0.18 1.88 5.79 -82.53 -0.48 1.40 16 5 C -0.19 -1.74 9.15 -39.50 -0.36 -2.10 16 6 C -0.03 -0.29 9.64 -38.89 -0.37 -0.66 16 7 C -0.20 -2.86 5.90 -104.69 -0.62 -3.48 16 8 C 0.56 9.72 7.77 -12.47 -0.10 9.62 16 9 O -0.51 -10.99 14.83 -16.48 -0.24 -11.23 16 10 N -0.71 -11.29 5.15 -52.78 -0.27 -11.56 16 11 C 0.12 2.32 2.87 -65.79 -0.19 2.13 16 12 H 0.09 2.05 7.44 -51.93 -0.39 1.66 16 13 C 0.15 3.67 5.58 -2.53 -0.01 3.65 16 14 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 15 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.28 10.09 55.49 0.56 -26.72 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C 0.14 2.90 6.84 -3.07 -0.02 2.87 16 24 C -0.11 -1.85 3.20 -88.79 -0.28 -2.13 16 25 H 0.07 1.08 8.00 -51.92 -0.42 0.67 16 26 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 27 C 0.37 5.56 7.77 -16.61 -0.13 5.43 16 28 O -0.46 -7.14 11.66 -39.76 -0.46 -7.60 16 29 N -0.51 -6.87 10.28 -9.21 -0.09 -6.96 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.29 6.47 -51.93 -0.34 -0.05 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.14 0.87 6.29 -52.49 -0.33 0.54 16 38 H 0.14 1.10 6.52 -52.49 -0.34 0.76 16 39 H 0.39 4.85 6.67 -40.82 -0.27 4.58 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 3.23 5.87 -51.93 -0.31 2.92 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 48 H 0.41 4.89 9.06 45.56 0.41 5.30 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -35.12 386.43 -8.97 -44.10 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.57 Total: 6.40 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.11 Total: 6.53 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.38 Total: -61.32 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.71 Total: -18.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.12 -8.97 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080562402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds