Wall clock time and date at job start Tue Mar 31 2020 17:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.50704 * 109.47274 * 119.99546 * 2 1 3 5 5 C 1.38353 * 119.40762 * 275.23828 * 4 2 1 6 6 C 1.38336 * 119.45920 * 180.27396 * 5 4 2 7 7 C 1.39993 * 118.34846 * 359.49633 * 6 5 4 8 8 C 1.47521 * 120.60146 * 180.27290 * 7 6 5 9 9 O 1.21583 * 120.00346 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99668 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88726 * 31.11279 * 11 10 8 13 13 C 1.54914 * 111.00235 * 267.19989 * 11 10 8 14 14 N 1.47424 * 104.82735 * 204.91541 * 13 11 10 15 15 C 1.36941 * 125.64661 * 204.14390 * 14 13 11 16 16 H 1.08000 * 119.99915 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99850 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99639 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46685 * 119.99934 * 19 17 15 22 22 H 1.48502 * 109.46653 * 239.99422 * 19 17 15 23 23 C 1.47013 * 108.70711 * 24.12599 * 14 13 11 24 24 C 1.54323 * 107.27080 * 358.93902 * 23 14 13 25 25 H 1.09007 * 110.87074 * 96.24689 * 24 23 14 26 26 C 1.53004 * 110.72209 * 219.43971 * 24 23 14 27 27 C 1.40280 * 118.80139 * 0.25561 * 7 6 5 28 28 O 1.35431 * 119.80035 * 180.02562 * 27 7 6 29 29 N 1.31877 * 119.40470 * 94.99708 * 4 2 1 30 30 H 1.08995 * 109.47246 * 300.00241 * 1 2 3 31 31 H 1.09004 * 109.47094 * 60.00212 * 1 2 3 32 32 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47693 * 239.99948 * 2 1 3 34 34 H 1.08999 * 109.46861 * 59.99439 * 3 2 1 35 35 H 1.08999 * 109.47074 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46945 * 299.99880 * 3 2 1 37 37 H 1.08001 * 120.27163 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.83060 * 179.77809 * 6 5 4 39 39 H 0.97001 * 119.99945 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.36549 * 323.74587 * 13 11 10 41 41 H 1.08999 * 110.37219 * 86.07592 * 13 11 10 42 42 H 0.97002 * 119.99668 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.88615 * 239.52323 * 23 14 13 44 44 H 1.09004 * 110.01556 * 118.43163 * 23 14 13 45 45 H 1.08996 * 109.46786 * 173.51786 * 26 24 23 46 46 H 1.08995 * 109.47438 * 293.52493 * 26 24 23 47 47 H 1.09005 * 109.46577 * 53.52759 * 26 24 23 48 48 H 0.96700 * 113.99980 * 89.99606 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1551 -0.0094 2.4170 6 6 2.6215 -0.6589 3.5458 7 6 2.9446 -2.0173 3.4453 8 6 3.4407 -2.7602 4.6193 9 8 3.7176 -3.9399 4.5198 10 7 3.5858 -2.1313 5.8026 11 6 4.0779 -2.8691 6.9686 12 1 4.7633 -3.6610 6.6666 13 6 2.9026 -3.4389 7.8016 14 7 3.4437 -3.5879 9.1648 15 6 2.9755 -4.4510 10.1194 16 1 3.4430 -4.4851 11.0924 17 6 1.9002 -5.2820 9.8363 18 7 1.3303 -5.2399 8.6507 19 14 1.2621 -6.4598 11.1383 20 1 2.0696 -6.3143 12.3760 21 1 -0.1592 -6.1475 11.4343 22 1 1.3689 -7.8544 10.6391 23 6 4.5693 -2.6567 9.3297 24 6 4.7484 -1.9126 7.9897 25 1 4.2378 -0.9496 8.0090 26 6 6.2326 -1.7295 7.6662 27 6 2.7879 -2.6595 2.2080 28 8 3.0939 -3.9733 2.0880 29 7 2.3425 -1.9900 1.1582 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.8927 1.0374 2.4606 38 1 2.7294 -0.1324 4.4826 39 1 3.3638 -1.1904 5.8822 40 1 2.0641 -2.7425 7.8004 41 1 2.5932 -4.4072 7.4083 42 1 0.5786 -5.8203 8.4531 43 1 5.4767 -3.2108 9.5701 44 1 4.3498 -1.9429 10.1237 45 1 6.3372 -1.3072 6.6668 46 1 6.6828 -1.0551 8.3946 47 1 6.7351 -2.6960 7.7066 48 1 2.3530 -4.5679 2.2689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080562402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:19 Heat of formation + Delta-G solvation = -46.351173 kcal Electronic energy + Delta-G solvation = -28966.354086 eV Core-core repulsion = 25021.034987 eV Total energy + Delta-G solvation = -3945.319099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02952 -40.60854 -39.13964 -38.40976 -36.11799 -35.61482 -34.47587 -33.46784 -32.16505 -30.91547 -29.39174 -27.99392 -27.41292 -26.10525 -25.13181 -24.30224 -22.73003 -21.89198 -21.51435 -21.10103 -19.47159 -18.94210 -18.68933 -18.17621 -17.11615 -16.98114 -16.87159 -16.14276 -15.88824 -15.61351 -15.52897 -15.23068 -14.80314 -14.53371 -14.41590 -14.29404 -14.09438 -13.96725 -13.86014 -13.44945 -13.37532 -13.05136 -12.87198 -12.84185 -12.80809 -12.62592 -12.37213 -12.16167 -12.06564 -12.03074 -11.85569 -11.80750 -11.65280 -11.43800 -11.15345 -11.01572 -10.78878 -10.45076 -10.08882 -9.82775 -8.90932 -7.78566 -5.24831 -0.50278 0.05763 1.43966 1.46079 1.56222 1.78906 2.01509 2.42896 2.48451 2.71109 3.31271 3.34630 3.59214 3.60619 3.69055 3.80335 3.93190 4.02870 4.09124 4.11506 4.14727 4.27324 4.43531 4.50374 4.59714 4.63992 4.65322 4.79083 4.84636 4.88663 4.89485 4.97700 5.02282 5.05823 5.08616 5.19486 5.22926 5.26599 5.37723 5.44095 5.44310 5.46804 5.49586 5.62564 5.79332 6.27030 6.45763 6.55838 6.80594 7.06238 7.23264 7.75634 8.37891 9.22110 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002806 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.613986 B = 9975.225752 C =10739.549243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C -0.144 4.144 4 C 0.174 3.826 5 C -0.176 4.176 6 C -0.017 4.017 7 C -0.222 4.222 8 C 0.556 3.444 9 O -0.565 6.565 10 N -0.693 5.693 11 C 0.137 3.863 12 H 0.066 0.934 13 C 0.157 3.843 14 N -0.627 5.627 15 C -0.237 4.237 16 H 0.086 0.914 17 C -0.071 4.071 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.296 1.296 23 C 0.133 3.867 24 C -0.093 4.093 25 H 0.102 0.898 26 C -0.130 4.130 27 C 0.351 3.649 28 O -0.482 6.482 29 N -0.530 5.530 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.412 0.588 40 H -0.005 1.005 41 H 0.060 0.940 42 H 0.244 0.756 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 19.991 -15.573 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.202 4.202 4 C 0.035 3.965 5 C -0.195 4.195 6 C -0.043 4.043 7 C -0.229 4.229 8 C 0.344 3.656 9 O -0.444 6.444 10 N -0.345 5.345 11 C 0.031 3.969 12 H 0.084 0.916 13 C 0.031 3.969 14 N -0.353 5.353 15 C -0.366 4.366 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.598 5.598 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.218 1.218 22 H -0.223 1.223 23 C 0.008 3.992 24 C -0.112 4.112 25 H 0.121 0.879 26 C -0.188 4.188 27 C 0.172 3.828 28 O -0.292 6.292 29 N -0.250 5.250 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.205 0.795 38 H 0.193 0.807 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 2.084 18.692 -16.456 24.990 hybrid contribution -0.982 -1.049 1.562 2.123 sum 1.103 17.642 -14.893 23.115 Atomic orbital electron populations 1.21808 0.92317 1.01797 1.03786 1.20269 0.97058 0.96609 0.92990 1.21948 1.01256 0.92775 1.04193 1.21883 0.90241 0.87511 0.96842 1.22327 1.01895 1.03700 0.91572 1.22119 0.90491 0.90660 1.00991 1.21032 1.10686 0.97485 0.93670 1.18261 0.77643 0.86452 0.83267 1.90812 1.51245 1.17234 1.85152 1.45497 1.66681 1.14131 1.08194 1.22190 0.95899 0.94329 0.84496 0.91585 1.21876 0.91724 0.99249 0.84075 1.44700 1.35749 1.43560 1.11326 1.19528 1.10810 1.12642 0.93630 0.89597 1.25708 0.99193 1.02128 0.99311 1.70119 1.25578 1.42362 1.21773 0.84965 0.77707 0.77932 0.78468 1.18636 1.21760 1.22286 1.21604 0.90041 0.91475 0.96111 1.22386 0.97937 0.98130 0.92739 0.87947 1.21702 0.92810 1.01878 1.02396 1.19353 0.90288 0.86238 0.86944 1.84642 1.40088 1.12476 1.91951 1.67135 1.14707 1.11321 1.31827 0.91282 0.89764 0.94103 0.90020 0.90206 0.92602 0.90108 0.79515 0.80656 0.74966 0.98711 0.92194 0.94641 0.95302 0.94601 0.91406 0.90104 0.93814 0.72510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.18 71.98 0.66 -0.88 16 2 C -0.05 -0.65 3.22 -11.54 -0.04 -0.69 16 3 C -0.14 -1.03 8.62 71.98 0.62 -0.41 16 4 C 0.17 3.35 5.79 42.58 0.25 3.60 16 5 C -0.18 -2.56 9.15 22.32 0.20 -2.36 16 6 C -0.02 -0.31 9.64 22.72 0.22 -0.09 16 7 C -0.22 -6.31 5.90 -19.91 -0.12 -6.42 16 8 C 0.56 19.92 7.77 86.69 0.67 20.59 16 9 O -0.57 -25.93 14.83 16.84 0.25 -25.68 16 10 N -0.69 -21.70 5.15 -439.15 -2.26 -23.97 16 11 C 0.14 5.35 2.87 46.38 0.13 5.48 16 12 H 0.07 2.99 7.44 -2.39 -0.02 2.97 16 13 C 0.16 8.04 5.58 86.86 0.48 8.53 16 14 N -0.63 -32.83 3.39 -691.99 -2.35 -35.18 16 15 C -0.24 -13.55 10.27 84.03 0.86 -12.68 16 16 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 17 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 18 N -0.95 -59.12 10.09 21.65 0.22 -58.90 16 19 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 C 0.13 5.29 6.84 86.73 0.59 5.88 16 24 C -0.09 -2.86 3.20 -9.61 -0.03 -2.89 16 25 H 0.10 2.61 8.00 -2.38 -0.02 2.59 16 26 C -0.13 -3.17 9.16 71.98 0.66 -2.51 16 27 C 0.35 10.87 7.77 85.13 0.66 11.53 16 28 O -0.48 -16.32 11.66 -66.46 -0.77 -17.09 16 29 N -0.53 -14.43 10.28 -296.05 -3.04 -17.48 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 0.31 6.47 -2.39 -0.02 0.29 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.19 1.13 6.29 -2.91 -0.02 1.11 16 38 H 0.18 1.91 6.52 -2.91 -0.02 1.89 16 39 H 0.41 9.14 6.67 -92.71 -0.62 8.52 16 40 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.06 3.72 5.87 -2.39 -0.01 3.70 16 42 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.03 1.15 7.77 -2.39 -0.02 1.13 16 44 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.04 1.19 8.06 -2.38 -0.02 1.17 16 48 H 0.41 11.44 9.06 -74.06 -0.67 10.77 16 Total: -1.00 -83.31 386.43 0.07 -83.24 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.30 Total: 23.11 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 6.30 Total: 22.97 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -7.44 Total: -135.52 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.53 Total: -42.78 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -83.31 0.07 -83.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080562402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -83.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds