Wall clock time and date at job start Tue Mar 31 2020 17:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 O 1.42903 * 109.47139 * 120.00545 * 2 1 3 5 5 C 1.35650 * 117.00055 * 85.46103 * 4 2 1 6 6 C 1.39347 * 120.54035 * 354.72454 * 5 4 2 7 7 C 1.38303 * 118.43573 * 180.26221 * 6 5 4 8 8 C 1.38760 * 119.44717 * 359.73071 * 7 6 5 9 9 N 1.31376 * 121.06773 * 0.02562 * 8 7 6 10 10 C 1.32863 * 121.69419 * 359.97438 * 9 8 7 11 11 C 1.47825 * 119.78137 * 180.02562 * 10 9 8 12 12 O 1.21557 * 120.00129 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00411 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00372 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.77864 * 31.76005 * 14 13 11 16 16 C 1.54334 * 110.85019 * 268.69132 * 14 13 11 17 17 N 1.47022 * 107.26590 * 219.67340 * 16 14 13 18 18 C 1.36931 * 125.64644 * 178.85239 * 17 16 14 19 19 H 1.08003 * 119.99676 * 185.76356 * 18 17 16 20 20 C 1.38806 * 120.00283 * 5.75658 * 18 17 16 21 21 N 1.31619 * 119.99840 * 353.14851 * 20 18 17 22 22 Si 1.86806 * 120.00126 * 173.15148 * 20 18 17 23 23 H 1.48503 * 109.46810 * 275.01039 * 22 20 18 24 24 H 1.48500 * 109.46931 * 35.01026 * 22 20 18 25 25 H 1.48507 * 109.47036 * 155.01003 * 22 20 18 26 26 C 1.47431 * 108.70245 * 358.58377 * 17 16 14 27 27 C 1.54908 * 104.82916 * 24.35839 * 26 17 16 28 28 H 1.08997 * 111.00648 * 81.06612 * 27 26 17 29 29 C 1.53006 * 111.00185 * 204.91447 * 27 26 17 30 30 H 1.09005 * 109.46944 * 299.99807 * 1 2 3 31 31 H 1.09003 * 109.46943 * 59.99730 * 1 2 3 32 32 H 1.09001 * 109.47573 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46944 * 240.00193 * 2 1 3 34 34 H 1.09000 * 109.47305 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47700 * 300.00023 * 3 2 1 36 36 H 1.09005 * 109.46984 * 60.00218 * 3 2 1 37 37 H 1.08000 * 120.78137 * 0.02562 * 6 5 4 38 38 H 1.08004 * 120.27209 * 179.71015 * 7 6 5 39 39 H 1.08000 * 119.46884 * 180.02562 * 8 7 6 40 40 H 0.97000 * 119.99866 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.99064 * 100.19775 * 16 14 13 42 42 H 1.09001 * 109.77845 * 339.02525 * 16 14 13 43 43 H 0.97005 * 119.99594 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.36394 * 143.19747 * 26 17 16 45 45 H 1.09000 * 110.36300 * 265.40818 * 26 17 16 46 46 H 1.08999 * 109.46761 * 58.54292 * 29 27 26 47 47 H 1.08995 * 109.47178 * 178.54421 * 29 27 26 48 48 H 1.09002 * 109.46965 * 298.54843 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.1214 -2.0234 1.0946 6 6 1.6824 -2.7122 -0.0343 7 6 1.8157 -4.0886 -0.0593 8 6 2.3827 -4.7389 1.0275 9 7 2.7942 -4.0683 2.0796 10 6 2.6874 -2.7459 2.1502 11 6 3.1650 -2.0339 3.3545 12 8 3.0696 -0.8241 3.4231 13 7 3.7061 -2.7262 4.3765 14 6 4.1788 -2.0207 5.5702 15 1 3.5779 -1.1306 5.7567 16 6 5.6701 -1.6476 5.4333 17 7 6.2971 -1.8673 6.7448 18 6 7.6204 -1.6742 7.0390 19 1 8.0039 -1.9524 8.0096 20 6 8.4690 -1.1211 6.0900 21 7 8.0364 -0.9072 4.8654 22 14 10.2249 -0.6805 6.5506 23 1 10.2522 0.6745 7.1576 24 1 10.7438 -1.6712 7.5276 25 1 11.0746 -0.6946 5.3327 26 6 5.2639 -2.3237 7.6922 27 6 4.1656 -2.9606 6.8046 28 1 4.4326 -3.9791 6.5231 29 6 2.8059 -2.9263 7.5055 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.2447 -2.1841 -0.8686 38 1 1.4810 -4.6525 -0.9175 39 1 2.4874 -5.8136 1.0082 40 1 3.7825 -3.6917 4.3216 41 1 5.7674 -0.6005 5.1466 42 1 6.1424 -2.2843 4.6852 43 1 8.6296 -0.5210 4.2021 44 1 5.6770 -3.0657 8.3755 45 1 4.8606 -1.4784 8.2499 46 1 2.5426 -1.8943 7.7374 47 1 2.0484 -3.3560 6.8501 48 1 2.8581 -3.5041 8.4283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080870761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:08 Heat of formation + Delta-G solvation = -10.445918 kcal Electronic energy + Delta-G solvation = -29362.802751 eV Core-core repulsion = 25419.040621 eV Total energy + Delta-G solvation = -3943.762130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01960 -39.12147 -38.50581 -37.24319 -33.83071 -33.42366 -32.76856 -32.14019 -30.38429 -30.27764 -27.71671 -27.50740 -25.57392 -24.81435 -23.98776 -23.16309 -21.42021 -20.73164 -19.90120 -19.61539 -18.47479 -17.51803 -17.01814 -16.73173 -15.79963 -15.56178 -15.28173 -14.87335 -14.78641 -14.56754 -14.18680 -13.85405 -13.70343 -13.35611 -13.15801 -12.99789 -12.70278 -12.65562 -12.59578 -12.45961 -12.40025 -12.10223 -11.81882 -11.60529 -11.24411 -11.20852 -10.99577 -10.95558 -10.70082 -10.50790 -10.30805 -10.07020 -9.95437 -9.86672 -9.81502 -9.63979 -9.33598 -8.56971 -8.49870 -8.23199 -6.73590 -5.61785 -2.95801 0.62442 1.09155 2.92972 3.03512 3.46401 3.50470 3.52301 3.53154 3.96025 4.25185 4.37693 4.50773 4.56297 4.60418 4.66841 4.81193 4.86274 4.97801 5.19638 5.27460 5.34246 5.42205 5.44077 5.51987 5.55373 5.59441 5.63128 5.74519 5.76313 5.87269 5.88747 6.02990 6.11368 6.12082 6.23409 6.27383 6.32193 6.45584 6.60992 6.72995 6.93035 7.07717 7.16049 7.61191 7.67455 7.75377 7.94750 8.13900 8.34903 8.75143 9.29955 9.91143 10.57312 11.49138 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.003279 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.601135 B = 8538.393235 C = 9304.463921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.262 6.262 5 C 0.141 3.859 6 C -0.181 4.181 7 C -0.113 4.113 8 C 0.054 3.946 9 N -0.419 5.419 10 C 0.052 3.948 11 C 0.568 3.432 12 O -0.514 6.514 13 N -0.694 5.694 14 C 0.121 3.879 15 H 0.089 0.911 16 C 0.173 3.827 17 N -0.606 5.606 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.282 1.282 25 H -0.292 1.292 26 C 0.141 3.859 27 C -0.114 4.114 28 H 0.078 0.922 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.404 0.596 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.022 0.978 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 -5.209 -12.356 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.172 6.172 5 C 0.090 3.910 6 C -0.207 4.207 7 C -0.133 4.133 8 C -0.106 4.106 9 N -0.131 5.131 10 C -0.088 4.088 11 C 0.352 3.648 12 O -0.389 6.389 13 N -0.345 5.345 14 C 0.016 3.984 15 H 0.107 0.893 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.218 1.218 26 C 0.015 3.985 27 C -0.134 4.134 28 H 0.096 0.904 29 C -0.194 4.194 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.239 0.761 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.792 -4.477 -11.510 21.658 hybrid contribution 0.558 0.030 -1.014 1.158 sum -17.234 -4.447 -12.524 21.763 Atomic orbital electron populations 1.22390 0.94953 1.02827 1.03483 1.22601 0.94378 0.94526 0.87304 1.21825 1.02706 0.92952 1.03013 1.86518 1.78918 1.14454 1.37321 1.20034 0.92703 0.84648 0.93626 1.21768 1.04844 0.95546 0.98534 1.22159 0.97307 0.94121 0.99678 1.22674 0.98006 1.00605 0.89340 1.67640 1.13106 1.06312 1.26010 1.20893 1.03026 0.89253 0.95614 1.17531 0.78597 0.86654 0.82059 1.90836 1.55821 1.12681 1.79550 1.45717 1.60694 1.10982 1.17068 1.22511 0.98705 0.94763 0.82450 0.89316 1.21486 0.85338 1.00452 0.87984 1.44403 1.04146 1.78959 1.05751 1.19024 0.82956 1.34936 0.98992 0.90376 1.24840 0.98410 1.01199 0.95863 1.69998 1.35047 1.49158 1.02098 0.86180 0.84289 0.78492 0.77056 1.21550 1.20784 1.21808 1.21575 0.88746 0.95758 0.92441 1.22615 0.95607 0.99245 0.95899 0.90402 1.21686 0.96232 1.01686 0.99789 0.91004 0.90905 0.92166 0.91095 0.91222 0.90677 0.90989 0.83732 0.84203 0.81955 0.76066 0.93191 0.93481 0.93770 0.94081 0.96034 0.92671 0.93139 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.20 37.16 0.34 -1.11 16 2 C 0.07 0.71 2.85 -26.73 -0.08 0.63 16 3 C -0.15 -1.46 9.56 37.16 0.36 -1.10 16 4 O -0.26 -3.97 7.86 -40.60 -0.32 -4.29 16 5 C 0.14 2.03 6.62 -38.56 -0.26 1.77 16 6 C -0.18 -1.84 8.36 -39.14 -0.33 -2.17 16 7 C -0.11 -0.98 10.10 -39.36 -0.40 -1.37 16 8 C 0.05 0.57 11.17 -17.55 -0.20 0.37 16 9 N -0.42 -5.97 9.54 -9.71 -0.09 -6.06 16 10 C 0.05 0.85 6.76 -82.89 -0.56 0.29 16 11 C 0.57 11.16 7.80 -12.34 -0.10 11.07 16 12 O -0.51 -11.69 14.78 -16.64 -0.25 -11.94 16 13 N -0.69 -13.03 5.10 -52.97 -0.27 -13.30 16 14 C 0.12 2.50 2.78 -66.09 -0.18 2.32 16 15 H 0.09 1.93 7.42 -51.93 -0.39 1.55 16 16 C 0.17 4.53 5.14 -3.06 -0.02 4.51 16 17 N -0.61 -16.15 3.39 -170.07 -0.58 -16.73 16 18 C -0.23 -6.66 10.26 -15.06 -0.15 -6.82 16 19 H 0.08 2.16 7.84 -52.48 -0.41 1.74 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -28.31 10.36 55.49 0.57 -27.73 16 22 Si 0.91 22.83 29.56 -169.99 -5.02 17.80 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 C 0.14 3.01 6.70 -2.53 -0.02 2.99 16 27 C -0.11 -2.05 3.27 -88.47 -0.29 -2.34 16 28 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 29 C -0.14 -1.98 9.30 37.16 0.35 -1.63 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 7.01 -51.93 -0.36 0.11 16 33 H 0.07 0.61 6.31 -51.93 -0.33 0.28 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.15 1.07 5.63 -52.49 -0.30 0.77 16 38 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.40 6.84 7.89 -40.82 -0.32 6.52 16 41 H 0.05 1.50 7.38 -51.93 -0.38 1.12 16 42 H 0.05 1.36 7.41 -51.93 -0.39 0.97 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 46 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -35.64 387.88 -9.22 -44.86 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.49 Total: 4.43 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.62 Total: 7.12 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.36 Total: -63.82 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.57 Total: -16.23 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.64 -9.22 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080870761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.412 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds