Wall clock time and date at job start Tue Mar 31 2020 17:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.91765 * 2 1 4 4 C 1.54904 * 111.00200 * 236.09193 * 2 1 3 5 5 N 1.47433 * 104.82924 * 204.91765 * 4 2 1 6 6 C 1.36939 * 125.64600 * 204.09351 * 5 4 2 7 7 H 1.07995 * 119.99946 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99818 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99867 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47015 * 89.99995 * 10 8 6 12 12 H 1.48493 * 109.47557 * 209.99949 * 10 8 6 13 13 H 1.48501 * 109.47303 * 330.00599 * 10 8 6 14 14 C 1.47017 * 108.70391 * 24.13004 * 5 4 2 15 15 C 1.54331 * 107.27026 * 358.94372 * 14 5 4 16 16 H 1.08994 * 110.72323 * 96.34386 * 15 14 5 17 17 N 1.46499 * 110.71553 * 219.44169 * 15 14 5 18 18 C 1.34771 * 120.00118 * 273.54203 * 17 15 14 19 19 O 1.21588 * 120.00029 * 0.02562 * 18 17 15 20 20 C 1.47515 * 120.00278 * 180.02562 * 18 17 15 21 21 C 1.36819 * 126.94675 * 179.97438 * 20 18 17 22 22 C 1.41265 * 103.84783 * 180.02562 * 21 20 18 23 23 C 1.50702 * 126.70275 * 180.02562 * 22 21 20 24 24 C 1.54887 * 110.48595 * 274.99718 * 23 22 21 25 25 C 1.54890 * 102.91108 * 156.66283 * 24 23 22 26 26 C 1.54463 * 104.10368 * 322.30112 * 25 24 23 27 27 C 1.53877 * 106.68421 * 23.34437 * 26 25 24 28 28 N 1.30130 * 106.58677 * 0.26288 * 22 21 20 29 29 O 1.20877 * 111.98229 * 359.53079 * 28 22 21 30 30 H 1.09003 * 109.47632 * 296.10557 * 1 2 3 31 31 H 1.09005 * 109.47045 * 56.09937 * 1 2 3 32 32 H 1.08998 * 109.47672 * 176.10182 * 1 2 3 33 33 H 1.09000 * 110.36874 * 86.08599 * 4 2 1 34 34 H 1.08996 * 110.46726 * 323.80535 * 4 2 1 35 35 H 0.97006 * 119.99985 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.88748 * 239.52145 * 14 5 4 37 37 H 1.09010 * 110.01032 * 118.42558 * 14 5 4 38 38 H 0.97006 * 119.99830 * 93.54798 * 17 15 14 39 39 H 1.08002 * 128.07862 * 0.02562 * 21 20 18 40 40 H 1.09006 * 110.43233 * 152.45984 * 23 22 21 41 41 H 1.09002 * 110.75856 * 275.07193 * 24 23 22 42 42 H 1.09006 * 110.75640 * 38.26179 * 24 23 22 43 43 H 1.09003 * 110.48855 * 80.83451 * 25 24 23 44 44 H 1.09003 * 110.48748 * 203.47148 * 25 24 23 45 45 H 1.08999 * 109.85715 * 264.10233 * 26 25 24 46 46 H 1.09003 * 110.15968 * 142.74863 * 26 25 24 47 47 H 1.08995 * 110.02951 * 240.87549 * 27 26 25 48 48 H 1.08998 * 110.07557 * 119.46051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7731 6 6 4.4640 -1.5669 -1.6070 7 1 4.3333 -1.5120 -2.6776 8 6 5.6830 -1.9656 -1.0761 9 7 5.8421 -2.0330 0.2288 10 14 7.0973 -2.4079 -2.2134 11 1 7.9012 -1.1924 -2.4994 12 1 7.9570 -3.4277 -1.5609 13 1 6.5580 -2.9549 -3.4843 14 6 3.4674 -1.2741 0.6962 15 6 2.0860 -0.8079 1.2023 16 1 1.4477 -1.6631 1.4240 17 7 2.2285 0.0496 2.3815 18 6 2.3020 -0.5003 3.6097 19 8 2.2504 -1.7081 3.7391 20 6 2.4449 0.3632 4.7972 21 6 2.5318 -0.0402 6.1017 22 6 2.6534 1.1689 6.8221 23 6 2.7849 1.3180 8.3159 24 6 1.3882 1.3197 8.9855 25 6 1.6988 0.8711 10.4351 26 6 2.8067 -0.1926 10.2708 27 6 3.4943 0.0903 8.9235 28 7 2.6247 2.1289 5.9441 29 8 2.5157 1.7076 4.8164 30 1 -0.3634 0.4522 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1560 -0.1722 -2.0836 34 1 1.4524 -1.6705 -1.4042 35 1 6.6939 -2.3119 0.5998 36 1 4.2425 -0.5998 1.0601 37 1 3.6660 -2.2884 1.0426 38 1 2.2699 1.0133 2.2783 39 1 2.5119 -1.0477 6.4901 40 1 3.3266 2.2316 8.5610 41 1 0.9560 2.3203 8.9749 42 1 0.7238 0.6083 8.4950 43 1 2.0639 1.7121 11.0248 44 1 0.8131 0.4356 10.8978 45 1 2.3650 -1.1890 10.2626 46 1 3.5291 -0.1113 11.0830 47 1 3.3863 -0.7689 8.2616 48 1 4.5504 0.3094 9.0812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080965051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:31 Heat of formation + Delta-G solvation = 37.102658 kcal Electronic energy + Delta-G solvation = -28668.700097 eV Core-core repulsion = 24726.999828 eV Total energy + Delta-G solvation = -3941.700269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.06134 -39.62005 -38.63061 -37.58459 -34.32972 -33.86708 -32.76698 -31.90674 -30.39043 -29.07943 -28.98273 -27.94451 -25.68075 -24.48134 -23.57685 -23.02272 -21.31287 -20.68442 -20.36140 -20.06746 -19.45485 -18.16348 -17.75461 -16.92427 -16.41357 -16.03210 -15.74496 -15.38070 -15.03414 -14.44652 -14.37036 -13.95449 -13.77880 -13.62249 -13.52234 -13.19099 -12.83265 -12.72754 -12.17098 -12.04239 -12.02713 -11.74763 -11.68527 -11.49450 -11.43078 -11.36839 -11.06033 -11.01453 -10.79271 -10.78289 -10.70054 -10.44523 -10.10981 -10.08159 -9.99699 -9.94430 -9.73435 -9.70376 -8.68234 -8.59050 -6.84640 -5.69737 -3.05000 0.82861 1.94205 2.65127 3.16782 3.35878 3.41268 3.45968 3.48390 3.76034 4.14818 4.30833 4.49617 4.55733 4.58847 4.89167 4.99767 5.04000 5.09113 5.12714 5.19751 5.27447 5.28803 5.33009 5.37019 5.40540 5.52894 5.54660 5.58863 5.71158 5.71425 5.81773 5.84406 5.93825 5.94445 5.99060 6.00640 6.11496 6.13499 6.29932 6.44415 6.59356 6.61037 6.88428 7.42493 7.56026 7.69021 7.83202 8.01881 8.22318 8.26943 9.20953 9.81781 10.46038 11.41105 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.002597 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.848790 B =10777.861489 C =11939.995233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.694 5.694 18 C 0.601 3.399 19 O -0.508 6.508 20 C -0.069 4.069 21 C -0.156 4.156 22 C 0.022 3.978 23 C -0.015 4.015 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.121 4.121 28 N -0.348 5.348 29 O 0.115 5.885 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.403 0.597 39 H 0.182 0.818 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 7.687 17.174 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.344 5.344 18 C 0.383 3.617 19 O -0.383 6.383 20 C -0.135 4.135 21 C -0.178 4.178 22 C -0.136 4.136 23 C -0.034 4.034 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.159 4.159 28 N -0.049 5.049 29 O 0.043 5.957 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.238 0.762 39 H 0.199 0.801 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.537 8.035 17.333 21.819 hybrid contribution 0.962 -0.537 -0.461 1.194 sum -9.575 7.498 16.873 20.799 Atomic orbital electron populations 1.21715 0.94890 1.01885 1.01137 1.22627 0.94943 0.99654 0.96094 0.90171 1.21596 0.87604 0.95056 0.94299 1.44399 1.07913 1.79263 1.01681 1.19043 0.89282 1.38608 0.88926 0.90264 1.24833 0.97907 1.01672 0.96025 1.69963 1.24211 1.53240 1.09206 0.86114 0.82295 0.77795 0.79511 1.21632 1.21680 1.20667 1.21489 0.89714 1.00583 0.83532 1.22651 1.00811 0.92663 0.82436 0.89034 1.45860 1.72150 1.10877 1.05503 1.16495 0.77928 0.86160 0.81076 1.90890 1.50056 1.12373 1.84987 1.24450 1.07586 0.83955 0.97531 1.22757 1.03407 1.00961 0.90688 1.23482 1.03386 0.88811 0.97952 1.20392 0.97869 1.00338 0.84781 1.22555 0.95423 1.01976 0.95338 1.22387 0.98690 0.98730 0.96316 1.22164 0.97683 0.99381 0.96933 1.22267 0.99715 0.97229 0.96696 1.73698 1.17401 1.23762 0.90044 1.84970 1.66572 1.20084 1.24096 0.93036 0.92631 0.92499 0.93848 0.95900 0.93701 0.93015 0.93155 0.76227 0.80112 0.88835 0.91115 0.90914 0.91426 0.91262 0.91456 0.91565 0.90717 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.11 -1.82 3.25 -88.47 -0.29 -2.11 16 3 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 4 C 0.14 2.79 6.70 -2.53 -0.02 2.77 16 5 N -0.61 -15.31 3.39 -170.07 -0.58 -15.89 16 6 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.41 10.31 55.49 0.57 -26.83 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.17 4.21 5.12 -3.06 -0.02 4.19 16 15 C 0.12 2.19 2.70 -66.09 -0.18 2.01 16 16 H 0.09 1.75 7.59 -51.93 -0.39 1.36 16 17 N -0.69 -11.07 5.13 -53.08 -0.27 -11.34 16 18 C 0.60 10.11 7.81 -12.48 -0.10 10.01 16 19 O -0.51 -10.20 16.64 5.29 0.09 -10.11 16 20 C -0.07 -1.00 7.29 -36.32 -0.26 -1.26 16 21 C -0.16 -1.99 9.90 -38.95 -0.39 -2.37 16 22 C 0.02 0.26 6.31 -82.16 -0.52 -0.26 16 23 C -0.01 -0.13 3.39 -90.11 -0.31 -0.44 16 24 C -0.11 -0.89 6.31 -24.74 -0.16 -1.04 16 25 C -0.12 -0.77 6.85 -24.97 -0.17 -0.94 16 26 C -0.12 -0.80 6.81 -25.51 -0.17 -0.98 16 27 C -0.12 -0.96 6.33 -25.61 -0.16 -1.12 16 28 N -0.35 -4.78 12.04 33.52 0.40 -4.38 16 29 O 0.11 1.60 11.04 15.55 0.17 1.77 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.05 1.40 7.27 -51.93 -0.38 1.02 16 37 H 0.05 1.42 7.50 -51.92 -0.39 1.03 16 38 H 0.40 5.41 8.34 -40.82 -0.34 5.07 16 39 H 0.18 2.04 7.19 -52.49 -0.38 1.66 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.63 6.16 -51.93 -0.32 0.31 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -32.28 387.01 -9.08 -41.37 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.64 Total: 2.17 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.64 Total: 0.18 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.13 Total: -58.44 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.26 Total: -8.34 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.28 -9.08 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080965051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.471 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds