Wall clock time and date at job start Tue Mar 31 2020 17:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 O 1.42903 * 109.47152 * 119.99746 * 2 1 3 5 5 C 1.35495 * 117.00100 * 149.99727 * 4 2 1 6 6 C 1.39172 * 119.52970 * 179.97438 * 5 4 2 7 7 C 1.37951 * 119.26424 * 179.70017 * 6 5 4 8 8 C 1.40281 * 118.35768 * 0.58012 * 7 6 5 9 9 C 1.47618 * 120.49653 * 179.70974 * 8 7 6 10 10 O 1.21582 * 120.00180 * 359.72760 * 9 8 7 11 11 N 1.34779 * 119.99734 * 179.72457 * 9 8 7 12 12 C 1.46503 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.78051 * 323.21468 * 12 11 9 14 14 C 1.55155 * 110.71980 * 86.45622 * 12 11 9 15 15 C 1.54906 * 101.58202 * 153.86751 * 14 12 11 16 16 N 1.47426 * 104.82959 * 322.98796 * 15 14 12 17 17 C 1.36935 * 125.64598 * 204.09185 * 16 15 14 18 18 H 1.08005 * 119.99877 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00369 * 359.75480 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.47018 * 108.70612 * 24.35650 * 16 15 14 26 26 H 1.08996 * 109.88548 * 239.29371 * 25 16 15 27 27 C 1.52995 * 109.88134 * 118.12761 * 25 16 15 28 28 C 1.39523 * 119.00197 * 359.44257 * 8 7 6 29 29 N 1.31667 * 120.62946 * 0.26959 * 28 8 7 30 30 H 1.09007 * 109.46928 * 300.00031 * 1 2 3 31 31 H 1.09000 * 109.46751 * 59.99524 * 1 2 3 32 32 H 1.08991 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47272 * 239.99612 * 2 1 3 34 34 H 1.08993 * 109.47112 * 60.00388 * 3 2 1 35 35 H 1.09006 * 109.46692 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.47271 * 299.99691 * 3 2 1 37 37 H 1.08003 * 120.36460 * 0.02562 * 6 5 4 38 38 H 1.08008 * 120.81970 * 180.29735 * 7 6 5 39 39 H 0.97000 * 120.00359 * 0.02562 * 11 9 8 40 40 H 1.08996 * 111.00485 * 35.78980 * 14 12 11 41 41 H 1.09002 * 111.03305 * 271.95673 * 14 12 11 42 42 H 1.09004 * 110.36614 * 204.15475 * 15 14 12 43 43 H 1.08999 * 110.37158 * 81.82525 * 15 14 12 44 44 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47492 * 61.45947 * 27 25 16 46 46 H 1.09006 * 109.47327 * 181.45442 * 27 25 16 47 47 H 1.09002 * 109.47636 * 301.45534 * 27 25 16 48 48 H 1.08005 * 119.68395 * 180.29418 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1971 -1.3121 1.0655 6 6 3.7109 -1.9848 2.1702 7 6 4.9207 -2.6383 2.0591 8 6 5.5952 -2.5873 0.8301 9 6 6.8959 -3.2644 0.6607 10 8 7.3929 -3.8680 1.5919 11 7 7.5326 -3.2136 -0.5261 12 6 8.8232 -3.8861 -0.6944 13 1 9.4218 -3.8069 0.2131 14 6 8.6203 -5.3724 -1.0903 15 6 9.9353 -5.6739 -1.8515 16 7 10.2368 -4.4338 -2.5896 17 6 10.9971 -4.3458 -3.7251 18 1 11.1602 -3.3859 -4.1927 19 6 11.5629 -5.4893 -4.2721 20 7 11.3689 -6.6581 -3.6990 21 14 12.6006 -5.3691 -5.8206 22 1 12.6653 -3.9534 -6.2645 23 1 13.9721 -5.8625 -5.5370 24 1 11.9888 -6.1958 -6.8918 25 6 9.5913 -3.3065 -1.9011 26 1 8.8957 -2.8088 -2.5767 27 6 10.6521 -2.3152 -1.4187 28 6 5.0154 -1.8918 -0.2314 29 7 3.8553 -1.2869 -0.0831 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.1660 -1.9994 3.1025 38 1 5.3405 -3.1721 2.8990 39 1 7.1363 -2.7318 -1.2689 40 1 7.7554 -5.4882 -1.7435 41 1 8.5270 -6.0035 -0.2065 42 1 9.7909 -6.5024 -2.5450 43 1 10.7369 -5.9015 -1.1488 44 1 11.7645 -7.4573 -4.0809 45 1 11.1972 -1.9204 -2.2762 46 1 10.1685 -1.4956 -0.8871 47 1 11.3464 -2.8230 -0.7493 48 1 5.5228 -1.8495 -1.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088606057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:15 Heat of formation + Delta-G solvation = -13.468844 kcal Electronic energy + Delta-G solvation = -28345.198609 eV Core-core repulsion = 24401.305395 eV Total energy + Delta-G solvation = -3943.893214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14109 -39.74258 -38.38539 -37.40713 -34.19658 -33.65942 -32.78754 -32.17476 -30.68514 -30.30033 -28.51961 -27.66676 -25.32790 -24.32406 -24.05077 -23.81828 -21.54282 -20.85986 -20.19562 -19.78528 -18.89060 -17.61863 -17.24205 -16.73444 -16.09118 -15.79995 -15.20593 -14.93718 -14.81011 -14.61633 -14.49232 -14.05085 -13.92758 -13.65731 -13.33467 -13.32288 -12.92630 -12.77808 -12.72121 -12.70503 -12.31599 -12.15288 -11.99110 -11.58669 -11.33274 -11.15883 -11.14221 -10.88288 -10.86740 -10.55111 -10.48461 -10.25387 -10.15666 -10.07722 -9.77876 -9.66962 -9.56147 -8.91295 -8.69260 -8.60401 -6.89472 -5.67535 -3.10299 0.50356 0.90283 2.61261 2.82910 3.23714 3.38198 3.43835 3.46168 3.65419 3.84017 4.45149 4.45896 4.51317 4.57323 4.61118 4.73103 4.81515 4.89621 5.15141 5.23018 5.26373 5.33110 5.36486 5.40393 5.41603 5.52156 5.56206 5.61634 5.71572 5.79405 5.79706 5.85388 6.05835 6.10074 6.22860 6.28882 6.32526 6.51550 6.58276 6.70788 6.84572 6.88047 7.07960 7.42551 7.50365 7.61032 7.65099 7.83598 8.29869 8.34249 9.18623 9.79547 10.43190 11.36039 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002256 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.599367 B =12410.742661 C =13130.773929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.342 3.658 6 C -0.199 4.199 7 C 0.017 3.983 8 C -0.221 4.221 9 C 0.566 3.434 10 O -0.539 6.539 11 N -0.710 5.710 12 C 0.136 3.864 13 H 0.093 0.907 14 C -0.152 4.152 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.155 3.845 26 H 0.036 0.964 27 C -0.156 4.156 28 C 0.179 3.821 29 N -0.543 5.543 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.015 0.985 44 H 0.252 0.748 45 H 0.055 0.945 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.939 13.098 9.170 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.206 6.206 5 C 0.163 3.837 6 C -0.220 4.220 7 C -0.009 4.009 8 C -0.227 4.227 9 C 0.352 3.648 10 O -0.417 6.417 11 N -0.360 5.360 12 C 0.031 3.969 13 H 0.111 0.889 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.047 3.953 26 H 0.054 0.946 27 C -0.215 4.215 28 C 0.021 3.979 29 N -0.266 5.266 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.012 13.012 9.194 25.579 hybrid contribution 0.826 -0.037 -0.657 1.056 sum -19.186 12.975 8.537 24.684 Atomic orbital electron populations 1.21914 0.92731 1.03098 1.03068 1.22421 0.94546 0.92861 0.87883 1.22219 1.02264 0.95458 1.02683 1.86272 1.31436 1.63892 1.38970 1.20047 0.85578 0.88393 0.89646 1.21047 0.98250 1.03370 0.99314 1.21542 0.91077 0.91549 0.96720 1.20898 0.98670 1.06520 0.96615 1.17830 0.83885 0.80147 0.82974 1.90780 1.67136 1.43513 1.40246 1.45987 1.22559 1.54705 1.12770 1.22182 0.82598 0.92861 0.99210 0.88885 1.23398 1.01307 0.94484 1.00027 1.21950 0.89614 0.91708 0.93949 1.44504 1.59006 1.01082 1.27429 1.19062 1.22556 0.93830 0.99348 0.90388 1.24795 1.00902 0.95459 0.99485 1.69811 1.48619 0.97823 1.40604 0.86009 0.79751 0.77256 0.82526 1.20549 1.21782 1.21763 1.20988 0.93208 0.90125 0.90978 0.94649 1.22248 0.99931 0.98444 1.00912 1.22661 0.88890 0.88487 0.97859 1.67261 1.10592 1.24352 1.24423 0.91623 0.90351 0.91753 0.88963 0.91986 0.91869 0.90935 0.83484 0.82769 0.76900 0.91969 0.91870 0.87346 0.96702 0.93729 0.92633 0.94312 0.92892 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 2 C 0.08 0.63 3.10 -26.73 -0.08 0.54 16 3 C -0.17 -1.19 9.53 37.16 0.35 -0.84 16 4 O -0.30 -2.95 9.75 -18.18 -0.18 -3.13 16 5 C 0.34 3.63 7.46 -16.96 -0.13 3.51 16 6 C -0.20 -1.91 10.02 -39.34 -0.39 -2.30 16 7 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 8 C -0.22 -2.62 5.89 -104.82 -0.62 -3.23 16 9 C 0.57 8.31 7.77 -12.43 -0.10 8.21 16 10 O -0.54 -9.76 16.14 5.29 0.09 -9.68 16 11 N -0.71 -10.11 5.16 -53.03 -0.27 -10.38 16 12 C 0.14 2.41 2.76 -66.09 -0.18 2.23 16 13 H 0.09 1.77 7.40 -51.93 -0.38 1.39 16 14 C -0.15 -2.98 6.77 -24.59 -0.17 -3.15 16 15 C 0.15 3.67 5.88 -2.53 -0.01 3.66 16 16 N -0.60 -14.55 3.13 -162.57 -0.51 -15.05 16 17 C -0.22 -5.88 9.87 -15.06 -0.15 -6.03 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.16 3.02 3.48 -66.95 -0.23 2.79 16 26 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 27 C -0.16 -2.82 9.14 37.16 0.34 -2.48 16 28 C 0.18 1.87 10.71 -17.14 -0.18 1.69 16 29 N -0.54 -5.90 8.61 -12.96 -0.11 -6.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.81 6.97 -51.93 -0.36 0.44 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.15 1.53 7.73 -52.48 -0.41 1.13 16 39 H 0.40 4.58 6.37 -40.82 -0.26 4.32 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.11 2.93 5.89 -51.93 -0.31 2.62 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 45 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.16 1.34 6.41 -52.48 -0.34 1.00 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -31.62 391.14 -8.71 -40.34 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.49 Total: 3.72 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.67 Total: 3.47 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.33 Total: -57.28 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.62 -8.71 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088606057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.869 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds