Wall clock time and date at job start Tue Mar 31 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 O 1.42903 * 109.47152 * 119.99746 * 2 1 3 5 5 C 1.35495 * 117.00100 * 149.99727 * 4 2 1 6 6 C 1.39172 * 119.52970 * 179.97438 * 5 4 2 7 7 C 1.37951 * 119.26424 * 179.70017 * 6 5 4 8 8 C 1.40281 * 118.35768 * 0.58012 * 7 6 5 9 9 C 1.47618 * 120.49653 * 179.70974 * 8 7 6 10 10 O 1.21582 * 120.00180 * 359.72760 * 9 8 7 11 11 N 1.34779 * 119.99734 * 179.72457 * 9 8 7 12 12 C 1.46503 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.78051 * 323.21468 * 12 11 9 14 14 C 1.55155 * 110.71980 * 86.45622 * 12 11 9 15 15 C 1.54906 * 101.58202 * 153.86751 * 14 12 11 16 16 N 1.47426 * 104.82959 * 322.98796 * 15 14 12 17 17 C 1.36935 * 125.64598 * 204.09185 * 16 15 14 18 18 H 1.08005 * 119.99877 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00369 * 359.75480 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.47018 * 108.70612 * 24.35650 * 16 15 14 26 26 H 1.08996 * 109.88548 * 239.29371 * 25 16 15 27 27 C 1.52995 * 109.88134 * 118.12761 * 25 16 15 28 28 C 1.39523 * 119.00197 * 359.44257 * 8 7 6 29 29 N 1.31667 * 120.62946 * 0.26959 * 28 8 7 30 30 H 1.09007 * 109.46928 * 300.00031 * 1 2 3 31 31 H 1.09000 * 109.46751 * 59.99524 * 1 2 3 32 32 H 1.08991 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47272 * 239.99612 * 2 1 3 34 34 H 1.08993 * 109.47112 * 60.00388 * 3 2 1 35 35 H 1.09006 * 109.46692 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.47271 * 299.99691 * 3 2 1 37 37 H 1.08003 * 120.36460 * 0.02562 * 6 5 4 38 38 H 1.08008 * 120.81970 * 180.29735 * 7 6 5 39 39 H 0.97000 * 120.00359 * 0.02562 * 11 9 8 40 40 H 1.08996 * 111.00485 * 35.78980 * 14 12 11 41 41 H 1.09002 * 111.03305 * 271.95673 * 14 12 11 42 42 H 1.09004 * 110.36614 * 204.15475 * 15 14 12 43 43 H 1.08999 * 110.37158 * 81.82525 * 15 14 12 44 44 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47492 * 61.45947 * 27 25 16 46 46 H 1.09006 * 109.47327 * 181.45442 * 27 25 16 47 47 H 1.09002 * 109.47636 * 301.45534 * 27 25 16 48 48 H 1.08005 * 119.68395 * 180.29418 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1971 -1.3121 1.0655 6 6 3.7109 -1.9848 2.1702 7 6 4.9207 -2.6383 2.0591 8 6 5.5952 -2.5873 0.8301 9 6 6.8959 -3.2644 0.6607 10 8 7.3929 -3.8680 1.5919 11 7 7.5326 -3.2136 -0.5261 12 6 8.8232 -3.8861 -0.6944 13 1 9.4218 -3.8069 0.2131 14 6 8.6203 -5.3724 -1.0903 15 6 9.9353 -5.6739 -1.8515 16 7 10.2368 -4.4338 -2.5896 17 6 10.9971 -4.3458 -3.7251 18 1 11.1602 -3.3859 -4.1927 19 6 11.5629 -5.4893 -4.2721 20 7 11.3689 -6.6581 -3.6990 21 14 12.6006 -5.3691 -5.8206 22 1 12.6653 -3.9534 -6.2645 23 1 13.9721 -5.8625 -5.5370 24 1 11.9888 -6.1958 -6.8918 25 6 9.5913 -3.3065 -1.9011 26 1 8.8957 -2.8088 -2.5767 27 6 10.6521 -2.3152 -1.4187 28 6 5.0154 -1.8918 -0.2314 29 7 3.8553 -1.2869 -0.0831 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.1660 -1.9994 3.1025 38 1 5.3405 -3.1721 2.8990 39 1 7.1363 -2.7318 -1.2689 40 1 7.7554 -5.4882 -1.7435 41 1 8.5270 -6.0035 -0.2065 42 1 9.7909 -6.5024 -2.5450 43 1 10.7369 -5.9015 -1.1488 44 1 11.7645 -7.4573 -4.0809 45 1 11.1972 -1.9204 -2.2762 46 1 10.1685 -1.4956 -0.8871 47 1 11.3464 -2.8230 -0.7493 48 1 5.5228 -1.8495 -1.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088606057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:14 Heat of formation + Delta-G solvation = -34.008250 kcal Electronic energy + Delta-G solvation = -28346.089264 eV Core-core repulsion = 24401.305395 eV Total energy + Delta-G solvation = -3944.783869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98914 -40.89168 -39.47201 -38.73833 -35.68545 -34.36998 -33.85538 -33.61511 -32.09174 -31.59650 -30.19970 -28.16469 -26.76160 -25.87033 -25.12765 -24.92629 -22.44329 -22.05363 -21.63953 -21.36790 -19.64096 -18.84166 -18.61481 -18.06987 -17.21595 -16.82337 -16.57146 -16.03785 -15.98524 -15.74807 -15.58045 -15.37087 -15.18756 -14.82056 -14.37868 -14.26634 -14.04569 -13.98824 -13.84212 -13.62906 -13.27559 -13.21369 -13.16954 -12.93034 -12.86525 -12.74564 -12.61233 -12.21302 -12.09872 -11.93406 -11.92306 -11.75885 -11.56263 -11.45390 -11.23424 -11.06643 -10.72950 -10.62090 -10.10909 -9.60434 -8.88307 -7.73689 -5.18257 -0.36902 0.11927 1.49490 1.50003 1.59960 1.78755 1.90726 2.04652 2.53114 2.75183 3.08516 3.37254 3.53714 3.68715 3.77172 3.86200 3.90086 3.95431 3.97644 4.02667 4.06615 4.22817 4.28812 4.51888 4.54796 4.62968 4.65737 4.68680 4.71853 4.83152 4.84183 4.86491 4.93294 4.95130 5.05398 5.07471 5.13599 5.21841 5.27231 5.32140 5.37255 5.52383 5.61485 5.62165 5.82008 6.14748 6.32058 6.49832 6.63344 7.12719 7.16678 7.80517 8.43910 9.28644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002256 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.599367 B =12410.742661 C =13130.773929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.336 3.664 6 C -0.195 4.195 7 C 0.015 3.985 8 C -0.234 4.234 9 C 0.570 3.430 10 O -0.576 6.576 11 N -0.699 5.699 12 C 0.154 3.846 13 H 0.082 0.918 14 C -0.138 4.138 15 C 0.157 3.843 16 N -0.614 5.614 17 C -0.223 4.223 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.294 1.294 25 C 0.150 3.850 26 H 0.055 0.945 27 C -0.148 4.148 28 C 0.185 3.815 29 N -0.551 5.551 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.158 0.842 39 H 0.412 0.588 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.077 0.923 43 H -0.015 1.015 44 H 0.245 0.755 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.869 15.470 8.968 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.211 6.211 5 C 0.158 3.842 6 C -0.215 4.215 7 C -0.010 4.010 8 C -0.240 4.240 9 C 0.359 3.641 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.048 3.952 13 H 0.100 0.900 14 C -0.178 4.178 15 C 0.032 3.968 16 N -0.339 5.339 17 C -0.352 4.352 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.221 1.221 25 C 0.044 3.956 26 H 0.073 0.927 27 C -0.207 4.207 28 C 0.028 3.972 29 N -0.274 5.274 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.187 0.813 38 H 0.176 0.824 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.003 0.997 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -21.987 15.448 8.988 28.335 hybrid contribution 1.324 -0.703 -0.548 1.596 sum -20.663 14.745 8.440 26.751 Atomic orbital electron populations 1.21923 0.91049 1.03259 1.04160 1.22641 0.95853 0.92987 0.86901 1.22194 1.01186 0.95109 1.03714 1.86278 1.31042 1.63820 1.39977 1.20318 0.85783 0.88242 0.89865 1.21241 0.97809 1.02487 0.99989 1.21654 0.91352 0.91507 0.96504 1.20674 0.97667 1.07829 0.97824 1.18174 0.84402 0.79370 0.82192 1.90767 1.68253 1.45238 1.41438 1.45739 1.21302 1.54482 1.13532 1.21738 0.83883 0.91635 0.97917 0.90026 1.23193 0.98944 0.96084 0.99562 1.21663 0.90929 0.91221 0.93006 1.44738 1.59066 1.02687 1.27397 1.19427 1.21941 0.93989 0.99806 0.89563 1.25610 1.02749 0.95380 1.02571 1.70056 1.49854 0.98235 1.42005 0.85013 0.77538 0.77781 0.79032 1.18825 1.22527 1.22071 1.21206 0.93764 0.89139 0.91522 0.92701 1.22136 0.99230 0.98784 1.00536 1.22933 0.88640 0.87466 0.98203 1.67327 1.10721 1.24645 1.24728 0.91231 0.88556 0.92063 0.89833 0.91620 0.93438 0.89269 0.81285 0.82432 0.75021 0.91166 0.91609 0.90543 0.99677 0.94515 0.93330 0.90954 0.94564 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 71.98 0.69 -0.69 16 2 C 0.07 1.01 3.10 30.59 0.09 1.10 16 3 C -0.16 -2.00 9.53 71.98 0.69 -1.32 16 4 O -0.30 -5.45 9.75 -87.96 -0.86 -6.31 16 5 C 0.34 6.50 7.46 84.83 0.63 7.14 16 6 C -0.19 -3.34 10.02 22.43 0.22 -3.11 16 7 C 0.02 0.30 9.70 22.70 0.22 0.52 16 8 C -0.23 -5.12 5.89 -19.99 -0.12 -5.24 16 9 C 0.57 15.92 7.77 86.72 0.67 16.59 16 10 O -0.58 -20.51 16.14 -3.97 -0.06 -20.58 16 11 N -0.70 -18.49 5.16 -439.96 -2.27 -20.76 16 12 C 0.15 5.30 2.76 46.18 0.13 5.43 16 13 H 0.08 3.06 7.40 -2.39 -0.02 3.05 16 14 C -0.14 -5.40 6.77 31.98 0.22 -5.19 16 15 C 0.16 7.81 5.88 86.85 0.51 8.32 16 16 N -0.61 -30.12 3.13 -668.26 -2.09 -32.21 16 17 C -0.22 -11.91 9.87 84.03 0.83 -11.09 16 18 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 20 N -0.95 -56.38 10.09 21.65 0.22 -56.16 16 21 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 C 0.15 5.66 3.48 45.34 0.16 5.82 16 26 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 27 C -0.15 -5.11 9.14 71.98 0.66 -4.45 16 28 C 0.19 3.45 10.71 85.03 0.91 4.36 16 29 N -0.55 -10.87 8.61 -307.81 -2.65 -13.52 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 1.32 6.97 -2.39 -0.02 1.30 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.16 2.95 7.73 -2.91 -0.02 2.93 16 39 H 0.41 8.32 6.37 -92.71 -0.59 7.73 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 4.31 5.89 -2.38 -0.01 4.30 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 46 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.19 2.46 6.41 -2.91 -0.02 2.44 16 Total: -1.00 -69.44 391.14 1.67 -67.77 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.37 Total: 20.02 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.98 Total: 14.71 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -6.79 Total: -122.64 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.92 Total: -26.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.44 1.67 -67.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088606057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.760 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds