Wall clock time and date at job start Tue Mar 31 2020 17:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.99606 * 2 1 4 4 C 1.54337 * 109.98800 * 238.96218 * 2 1 3 5 5 H 1.08995 * 110.67038 * 337.04955 * 4 2 1 6 6 N 1.46506 * 110.84851 * 100.19846 * 4 2 1 7 7 C 1.34773 * 120.00184 * 200.14557 * 6 4 2 8 8 O 1.21606 * 119.99679 * 359.97438 * 7 6 4 9 9 C 1.47395 * 119.99941 * 180.02562 * 7 6 4 10 10 C 1.37360 * 128.56807 * 359.67507 * 9 7 6 11 11 O 1.33491 * 106.34164 * 179.85942 * 10 9 7 12 12 N 1.20659 * 113.15785 * 0.44920 * 11 10 9 13 13 C 1.30013 * 112.29845 * 359.71875 * 12 11 10 14 14 C 1.50701 * 127.33153 * 179.97438 * 13 12 11 15 15 C 1.54264 * 110.03433 * 57.95124 * 14 13 12 16 16 C 1.54967 * 104.15996 * 217.13776 * 15 14 13 17 17 C 1.54881 * 102.77889 * 37.88692 * 16 15 14 18 18 C 1.53877 * 110.03387 * 300.73223 * 14 13 12 19 19 C 1.55151 * 103.02268 * 218.66483 * 4 2 1 20 20 C 1.54914 * 101.58023 * 35.30809 * 19 4 2 21 21 N 1.47020 * 109.88323 * 121.10110 * 2 1 3 22 22 C 1.36945 * 125.64525 * 298.39113 * 21 2 1 23 23 H 1.07997 * 119.99756 * 359.71717 * 22 21 2 24 24 C 1.38805 * 119.99878 * 179.71622 * 22 21 2 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09003 * 109.46741 * 300.35905 * 1 2 3 31 31 H 1.08997 * 109.46982 * 60.35535 * 1 2 3 32 32 H 1.08997 * 109.47510 * 180.35692 * 1 2 3 33 33 H 0.97003 * 119.99658 * 20.14196 * 6 4 2 34 34 H 1.08005 * 126.82650 * 359.97438 * 10 9 7 35 35 H 1.09001 * 110.01756 * 179.34211 * 14 13 12 36 36 H 1.08999 * 110.48691 * 335.78200 * 15 14 13 37 37 H 1.09002 * 110.48683 * 98.42382 * 15 14 13 38 38 H 1.08997 * 110.71743 * 279.57196 * 16 15 14 39 39 H 1.09004 * 110.76439 * 156.22352 * 16 15 14 40 40 H 1.08998 * 110.48881 * 203.40571 * 17 16 15 41 41 H 1.09000 * 110.49197 * 80.76076 * 17 16 15 42 42 H 1.08996 * 110.03271 * 238.57482 * 18 14 13 43 43 H 1.09003 * 110.02861 * 359.97438 * 18 14 13 44 44 H 1.09002 * 111.00697 * 277.23703 * 19 4 2 45 45 H 1.08990 * 111.04019 * 153.39882 * 19 4 2 46 46 H 1.08999 * 110.37083 * 204.15142 * 20 19 4 47 47 H 1.08999 * 110.36305 * 81.82793 * 20 19 4 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3066 -1.4405 -1.6226 6 7 2.4637 0.1968 -2.2864 7 6 2.5638 -0.2146 -3.5659 8 8 2.3175 -1.3701 -3.8540 9 6 2.9729 0.7357 -4.6157 10 6 3.2846 2.0676 -4.4909 11 8 3.5957 2.4969 -5.7160 12 7 3.5114 1.6352 -6.5564 13 6 3.1417 0.4933 -6.0567 14 6 2.9305 -0.8025 -6.7965 15 6 4.2260 -1.2106 -7.5280 16 6 3.7306 -1.8295 -8.8596 17 6 2.5288 -0.9259 -9.2311 18 6 1.8516 -0.6219 -7.8788 19 6 3.2863 -1.5184 -0.6916 20 6 2.8099 -1.8826 0.7367 21 7 2.0301 -0.7142 1.1838 22 6 1.8039 -0.3565 2.4862 23 1 1.2163 0.5214 2.7109 24 6 2.3298 -1.1223 3.5176 25 7 3.0464 -2.1919 3.2438 26 14 2.0219 -0.6340 5.2942 27 1 3.1025 0.2760 5.7519 28 1 0.7133 0.0604 5.3970 29 1 2.0052 -1.8503 6.1460 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3634 -1.0276 0.0064 33 1 2.6604 1.1184 -2.0564 34 1 3.2808 2.6510 -3.5820 35 1 2.6327 -1.5859 -6.0995 36 1 4.8465 -0.3357 -7.7218 37 1 4.7769 -1.9487 -6.9450 38 1 3.4074 -2.8596 -8.7094 39 1 4.5061 -1.7743 -9.6235 40 1 1.8422 -1.4564 -9.8908 41 1 2.8747 -0.0047 -9.7001 42 1 1.0307 -1.3181 -7.7074 43 1 1.4805 0.4029 -7.8685 44 1 4.1670 -0.8769 -0.6581 45 1 3.4813 -2.4155 -1.2791 46 1 3.6655 -2.0413 1.3931 47 1 2.1801 -2.7718 0.7113 48 1 3.4142 -2.7268 3.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088614963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:37 Heat of formation + Delta-G solvation = 36.816913 kcal Electronic energy + Delta-G solvation = -28979.741941 eV Core-core repulsion = 25038.029281 eV Total energy + Delta-G solvation = -3941.712660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.09387 -39.71134 -38.46437 -37.55024 -34.20396 -33.85255 -32.50028 -31.68221 -30.42458 -29.03308 -28.92582 -28.58855 -25.62938 -24.09102 -23.83703 -22.71933 -20.99300 -20.78362 -20.31098 -19.83126 -19.71169 -18.14927 -17.82170 -16.87181 -16.70411 -16.03259 -15.92264 -15.31562 -14.86262 -14.67622 -14.38864 -14.00015 -13.73454 -13.60665 -13.57530 -13.35918 -12.85989 -12.20204 -12.14965 -12.03271 -11.95548 -11.63266 -11.40990 -11.32935 -11.26572 -11.19950 -10.92276 -10.89371 -10.87560 -10.79232 -10.60384 -10.47222 -10.13953 -10.01024 -9.92700 -9.90399 -9.80318 -9.61924 -8.77695 -8.68438 -6.92977 -5.70245 -3.13557 0.90057 1.62760 2.74041 3.20120 3.22083 3.36296 3.41690 3.43612 3.80187 4.03775 4.41929 4.43255 4.45498 4.65857 4.74146 4.87606 5.10986 5.21237 5.22618 5.29379 5.33905 5.36909 5.44613 5.45538 5.47717 5.56910 5.60177 5.67577 5.74447 5.76716 5.90370 5.97196 6.05087 6.09657 6.15490 6.20833 6.25168 6.28243 6.46509 6.53213 6.66220 6.80002 7.02748 7.45990 7.56437 7.57468 7.80400 8.01989 8.22465 8.30575 9.15554 9.76441 10.39671 11.33050 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002420 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.255625 B =11568.217280 C =11987.020360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.707 5.707 7 C 0.593 3.407 8 O -0.529 6.529 9 C -0.247 4.247 10 C -0.011 4.011 11 O 0.096 5.904 12 N -0.357 5.357 13 C 0.081 3.919 14 C -0.024 4.024 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.222 4.222 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.282 1.282 29 H -0.290 1.290 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.226 0.774 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.110 0.890 47 H 0.015 0.985 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 6.478 -20.813 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.357 5.357 7 C 0.378 3.622 8 O -0.406 6.406 9 C -0.254 4.254 10 C -0.093 4.093 11 O 0.036 5.964 12 N -0.063 5.063 13 C -0.082 4.082 14 C -0.043 4.043 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.207 1.207 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.242 0.758 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.033 0.967 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.889 6.011 -21.974 22.799 hybrid contribution -0.365 0.405 1.948 2.023 sum 0.524 6.417 -20.027 21.036 Atomic orbital electron populations 1.22250 0.97791 1.01500 1.00010 1.20976 0.92618 0.94752 0.86857 0.94679 1.22209 0.97769 0.90637 0.86145 0.88809 1.45913 1.68929 1.14210 1.06663 1.16795 0.77551 0.86463 0.81350 1.90769 1.49946 1.18094 1.81818 1.22477 1.12792 0.94890 0.95275 1.26436 0.97276 0.94679 0.90904 1.84580 1.64220 1.34340 1.13258 1.73615 1.19761 0.98953 1.13953 1.24769 0.98187 0.95413 0.89841 1.20507 0.96537 0.90688 0.96552 1.22456 0.96027 1.00845 0.95987 1.22503 0.97645 0.99258 0.96668 1.22355 0.97239 0.99695 0.96744 1.22186 0.97391 1.02005 0.93601 1.23403 0.96643 0.99387 0.99791 1.21961 0.97430 0.88344 0.89508 1.44494 1.59413 1.28050 1.00034 1.19010 1.27522 1.07999 0.80452 0.90434 1.24793 1.00353 0.97295 0.98089 1.69793 1.39227 1.17593 1.30236 0.86081 0.77754 0.77261 0.84427 1.21591 1.20743 1.21646 0.92597 0.94338 0.92868 0.77005 0.75792 0.86603 0.91303 0.90984 0.91109 0.91394 0.91513 0.91562 0.90960 0.91783 0.91973 0.91832 0.87265 0.96706 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.15 37.16 0.34 -2.41 16 2 C 0.16 2.95 3.48 -66.94 -0.23 2.72 16 3 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 4 C 0.14 2.34 2.76 -66.09 -0.18 2.16 16 5 H 0.09 1.73 7.40 -51.93 -0.38 1.35 16 6 N -0.71 -9.58 5.20 -53.11 -0.28 -9.85 16 7 C 0.59 8.54 7.81 -12.53 -0.10 8.45 16 8 O -0.53 -9.34 15.00 5.27 0.08 -9.26 16 9 C -0.25 -2.95 6.47 -102.90 -0.67 -3.62 16 10 C -0.01 -0.09 11.85 30.41 0.36 0.27 16 11 O 0.10 0.98 11.06 18.66 0.21 1.19 16 12 N -0.36 -4.29 11.85 34.78 0.41 -3.88 16 13 C 0.08 1.00 5.78 -79.77 -0.46 0.53 16 14 C -0.02 -0.27 3.36 -90.65 -0.30 -0.58 16 15 C -0.11 -1.16 6.36 -25.03 -0.16 -1.32 16 16 C -0.12 -1.02 6.91 -24.70 -0.17 -1.19 16 17 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 18 C -0.11 -1.14 6.45 -25.61 -0.17 -1.30 16 19 C -0.15 -2.91 6.77 -24.58 -0.17 -3.08 16 20 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 21 N -0.59 -14.26 3.13 -162.56 -0.51 -14.77 16 22 C -0.22 -5.85 9.87 -15.06 -0.15 -5.99 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 26 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 4.15 7.50 -40.82 -0.31 3.84 16 34 H 0.23 0.90 7.68 -52.48 -0.40 0.50 16 35 H 0.12 1.53 6.33 -51.93 -0.33 1.20 16 36 H 0.07 0.73 7.72 -51.93 -0.40 0.33 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -31.22 384.01 -8.64 -39.86 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.54 Total: 3.40 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.34 Total: -3.34 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.19 Total: -54.04 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.29 Total: -8.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.22 -8.64 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088614963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.675 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds