Wall clock time and date at job start Tue Mar 31 2020 17:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.99606 * 2 1 4 4 C 1.54337 * 109.98800 * 238.96218 * 2 1 3 5 5 H 1.08995 * 110.67038 * 337.04955 * 4 2 1 6 6 N 1.46506 * 110.84851 * 100.19846 * 4 2 1 7 7 C 1.34773 * 120.00184 * 200.14557 * 6 4 2 8 8 O 1.21606 * 119.99679 * 359.97438 * 7 6 4 9 9 C 1.47395 * 119.99941 * 180.02562 * 7 6 4 10 10 C 1.37360 * 128.56807 * 359.67507 * 9 7 6 11 11 O 1.33491 * 106.34164 * 179.85942 * 10 9 7 12 12 N 1.20659 * 113.15785 * 0.44920 * 11 10 9 13 13 C 1.30013 * 112.29845 * 359.71875 * 12 11 10 14 14 C 1.50701 * 127.33153 * 179.97438 * 13 12 11 15 15 C 1.54264 * 110.03433 * 57.95124 * 14 13 12 16 16 C 1.54967 * 104.15996 * 217.13776 * 15 14 13 17 17 C 1.54881 * 102.77889 * 37.88692 * 16 15 14 18 18 C 1.53877 * 110.03387 * 300.73223 * 14 13 12 19 19 C 1.55151 * 103.02268 * 218.66483 * 4 2 1 20 20 C 1.54914 * 101.58023 * 35.30809 * 19 4 2 21 21 N 1.47020 * 109.88323 * 121.10110 * 2 1 3 22 22 C 1.36945 * 125.64525 * 298.39113 * 21 2 1 23 23 H 1.07997 * 119.99756 * 359.71717 * 22 21 2 24 24 C 1.38805 * 119.99878 * 179.71622 * 22 21 2 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09003 * 109.46741 * 300.35905 * 1 2 3 31 31 H 1.08997 * 109.46982 * 60.35535 * 1 2 3 32 32 H 1.08997 * 109.47510 * 180.35692 * 1 2 3 33 33 H 0.97003 * 119.99658 * 20.14196 * 6 4 2 34 34 H 1.08005 * 126.82650 * 359.97438 * 10 9 7 35 35 H 1.09001 * 110.01756 * 179.34211 * 14 13 12 36 36 H 1.08999 * 110.48691 * 335.78200 * 15 14 13 37 37 H 1.09002 * 110.48683 * 98.42382 * 15 14 13 38 38 H 1.08997 * 110.71743 * 279.57196 * 16 15 14 39 39 H 1.09004 * 110.76439 * 156.22352 * 16 15 14 40 40 H 1.08998 * 110.48881 * 203.40571 * 17 16 15 41 41 H 1.09000 * 110.49197 * 80.76076 * 17 16 15 42 42 H 1.08996 * 110.03271 * 238.57482 * 18 14 13 43 43 H 1.09003 * 110.02861 * 359.97438 * 18 14 13 44 44 H 1.09002 * 111.00697 * 277.23703 * 19 4 2 45 45 H 1.08990 * 111.04019 * 153.39882 * 19 4 2 46 46 H 1.08999 * 110.37083 * 204.15142 * 20 19 4 47 47 H 1.08999 * 110.36305 * 81.82793 * 20 19 4 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3066 -1.4405 -1.6226 6 7 2.4637 0.1968 -2.2864 7 6 2.5638 -0.2146 -3.5659 8 8 2.3175 -1.3701 -3.8540 9 6 2.9729 0.7357 -4.6157 10 6 3.2846 2.0676 -4.4909 11 8 3.5957 2.4969 -5.7160 12 7 3.5114 1.6352 -6.5564 13 6 3.1417 0.4933 -6.0567 14 6 2.9305 -0.8025 -6.7965 15 6 4.2260 -1.2106 -7.5280 16 6 3.7306 -1.8295 -8.8596 17 6 2.5288 -0.9259 -9.2311 18 6 1.8516 -0.6219 -7.8788 19 6 3.2863 -1.5184 -0.6916 20 6 2.8099 -1.8826 0.7367 21 7 2.0301 -0.7142 1.1838 22 6 1.8039 -0.3565 2.4862 23 1 1.2163 0.5214 2.7109 24 6 2.3298 -1.1223 3.5176 25 7 3.0464 -2.1919 3.2438 26 14 2.0219 -0.6340 5.2942 27 1 3.1025 0.2760 5.7519 28 1 0.7133 0.0604 5.3970 29 1 2.0052 -1.8503 6.1460 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3634 -1.0276 0.0064 33 1 2.6604 1.1184 -2.0564 34 1 3.2808 2.6510 -3.5820 35 1 2.6327 -1.5859 -6.0995 36 1 4.8465 -0.3357 -7.7218 37 1 4.7769 -1.9487 -6.9450 38 1 3.4074 -2.8596 -8.7094 39 1 4.5061 -1.7743 -9.6235 40 1 1.8422 -1.4564 -9.8908 41 1 2.8747 -0.0047 -9.7001 42 1 1.0307 -1.3181 -7.7074 43 1 1.4805 0.4029 -7.8685 44 1 4.1670 -0.8769 -0.6581 45 1 3.4813 -2.4155 -1.2791 46 1 3.6655 -2.0413 1.3931 47 1 2.1801 -2.7718 0.7113 48 1 3.4142 -2.7268 3.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088614963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:36 Heat of formation + Delta-G solvation = 18.318315 kcal Electronic energy + Delta-G solvation = -28980.544100 eV Core-core repulsion = 25038.029281 eV Total energy + Delta-G solvation = -3942.514819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.95966 -40.97595 -39.36467 -38.97908 -35.66676 -34.75811 -33.97186 -32.86952 -32.03028 -30.47036 -29.68829 -29.68281 -27.01137 -25.89599 -25.07776 -23.53187 -22.30656 -21.69754 -21.57549 -21.34927 -20.56058 -19.18385 -18.69288 -18.67211 -17.74078 -17.39053 -16.71913 -16.63338 -16.19136 -15.92912 -15.71556 -15.56954 -15.09552 -14.54613 -14.44037 -14.33208 -14.29669 -13.98866 -13.74362 -13.22495 -12.94521 -12.91653 -12.79268 -12.70191 -12.60528 -12.22997 -12.18304 -12.10081 -12.06397 -11.99076 -11.98262 -11.69398 -11.56107 -11.54097 -11.44317 -11.07500 -10.89191 -10.74982 -10.71398 -10.06672 -8.88274 -7.73375 -5.18252 0.08477 0.73189 1.49945 1.51155 1.59449 1.82600 2.13626 2.26239 2.53498 2.93986 3.21775 3.37591 3.56964 3.66670 3.67230 3.84927 3.89128 3.93035 3.96205 4.03775 4.22342 4.42038 4.44751 4.51590 4.53391 4.55783 4.63341 4.67809 4.67864 4.75840 4.82861 4.84888 4.92965 4.97396 5.00368 5.05948 5.12803 5.18700 5.21471 5.33442 5.37763 5.42957 5.52285 5.60480 5.61827 5.82086 6.32356 6.47894 7.12709 7.13707 7.22044 7.80821 8.43829 9.28550 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002420 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.255625 B =11568.217280 C =11987.020360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.059 0.941 4 C 0.156 3.844 5 H 0.081 0.919 6 N -0.694 5.694 7 C 0.598 3.402 8 O -0.568 6.568 9 C -0.280 4.280 10 C 0.032 3.968 11 O 0.099 5.901 12 N -0.370 5.370 13 C 0.068 3.932 14 C -0.028 4.028 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.138 4.138 20 C 0.157 3.843 21 N -0.613 5.613 22 C -0.224 4.224 23 H 0.087 0.913 24 C -0.070 4.070 25 N -0.952 5.952 26 Si 0.977 3.023 27 H -0.285 1.285 28 H -0.269 1.269 29 H -0.300 1.300 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.415 0.585 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.077 0.923 47 H -0.016 1.016 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 9.169 -21.973 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.077 0.923 4 C 0.050 3.950 5 H 0.099 0.901 6 N -0.345 5.345 7 C 0.385 3.615 8 O -0.448 6.448 9 C -0.288 4.288 10 C -0.050 4.050 11 O 0.041 5.959 12 N -0.077 5.077 13 C -0.095 4.095 14 C -0.047 4.047 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.178 4.178 20 C 0.032 3.968 21 N -0.339 5.339 22 C -0.353 4.353 23 H 0.105 0.895 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.806 3.194 27 H -0.212 1.212 28 H -0.194 1.194 29 H -0.227 1.227 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.253 0.747 34 H 0.291 0.709 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.002 0.998 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.618 8.771 -23.171 24.784 hybrid contribution -0.293 -0.379 2.274 2.324 sum 0.325 8.392 -20.897 22.522 Atomic orbital electron populations 1.22143 0.96537 1.00715 1.01335 1.21195 0.93448 0.95295 0.85505 0.92338 1.21738 0.96181 0.90713 0.86373 0.90136 1.45594 1.68755 1.14510 1.05634 1.17030 0.76495 0.86276 0.81654 1.90761 1.51612 1.19992 1.82408 1.22217 1.16034 0.96073 0.94462 1.27255 0.92952 0.93439 0.91378 1.84571 1.63728 1.33842 1.13760 1.73625 1.20449 0.98950 1.14658 1.24945 0.98367 0.95760 0.90388 1.20494 0.97579 0.90083 0.96574 1.22436 0.95358 1.00544 0.96834 1.22510 0.97946 0.99295 0.95914 1.22344 0.97371 0.99885 0.95975 1.22175 0.97150 1.01522 0.94154 1.23191 0.97734 0.99973 0.96883 1.21662 0.95731 0.87788 0.91644 1.44727 1.59883 1.28365 1.00886 1.19391 1.26412 1.07781 0.81674 0.89490 1.25598 1.01015 0.97718 1.01874 1.70046 1.40685 1.18795 1.30652 0.85094 0.78045 0.76442 0.79849 1.21230 1.19425 1.22731 0.93315 0.90897 0.94729 0.74741 0.70879 0.88866 0.91880 0.91486 0.90673 0.90042 0.89997 0.91571 0.90888 0.92548 0.91041 0.91785 0.90520 0.99837 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.15 71.98 0.66 -4.28 16 2 C 0.15 5.48 3.48 45.35 0.16 5.63 16 3 H 0.06 1.88 7.69 -2.39 -0.02 1.87 16 4 C 0.16 5.13 2.76 46.18 0.13 5.26 16 5 H 0.08 2.94 7.40 -2.39 -0.02 2.92 16 6 N -0.69 -16.93 5.20 -440.19 -2.29 -19.21 16 7 C 0.60 16.30 7.81 86.65 0.68 16.97 16 8 O -0.57 -20.06 15.00 -4.05 -0.06 -20.12 16 9 C -0.28 -6.11 6.47 -18.75 -0.12 -6.23 16 10 C 0.03 0.42 11.85 67.61 0.80 1.22 16 11 O 0.10 1.74 11.06 77.01 0.85 2.59 16 12 N -0.37 -8.28 11.85 -44.79 -0.53 -8.81 16 13 C 0.07 1.61 5.78 45.16 0.26 1.87 16 14 C -0.03 -0.64 3.36 -10.81 -0.04 -0.68 16 15 C -0.11 -2.27 6.36 31.70 0.20 -2.07 16 16 C -0.12 -1.85 6.91 31.91 0.22 -1.62 16 17 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 18 C -0.11 -2.19 6.45 31.32 0.20 -1.99 16 19 C -0.14 -5.25 6.77 31.99 0.22 -5.03 16 20 C 0.16 7.66 5.89 86.86 0.51 8.17 16 21 N -0.61 -29.36 3.13 -668.23 -2.09 -31.45 16 22 C -0.22 -11.73 9.87 84.03 0.83 -10.90 16 23 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 25 N -0.95 -55.76 10.09 21.65 0.22 -55.54 16 26 Si 0.98 44.34 29.55 68.60 2.03 46.37 16 27 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 30 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 6.90 7.50 -92.71 -0.70 6.21 16 34 H 0.28 0.49 7.68 -2.91 -0.02 0.47 16 35 H 0.09 2.57 6.33 -2.39 -0.02 2.55 16 36 H 0.06 1.32 7.72 -2.39 -0.02 1.30 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.17 7.67 -2.39 -0.02 1.15 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 4.26 5.87 -2.39 -0.01 4.25 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -70.72 384.01 3.79 -66.93 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.27 Total: 17.90 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.39 Total: 1.35 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.69 Total: -115.01 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.79 Total: -17.53 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -70.72 3.79 -66.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088614963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.245 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds