Wall clock time and date at job start Tue Mar 31 2020 17:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 O 1.42898 * 109.47196 * 119.99884 * 2 1 3 5 5 C 1.35665 * 116.99843 * 85.03998 * 4 2 1 6 6 C 1.38941 * 120.57793 * 354.58719 * 5 4 2 7 7 N 1.31634 * 120.79001 * 179.97438 * 6 5 4 8 8 C 1.31904 * 122.14750 * 359.97438 * 7 6 5 9 9 C 1.37970 * 121.07670 * 359.97438 * 8 7 6 10 10 C 1.39956 * 119.06781 * 0.25156 * 9 8 7 11 11 C 1.47832 * 120.96200 * 179.72622 * 10 9 8 12 12 O 1.21553 * 119.99936 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00350 * 0.02562 * 11 10 9 14 14 C 1.46494 * 120.00517 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.64028 * 323.30865 * 14 13 11 16 16 C 1.55157 * 110.72298 * 86.45058 * 14 13 11 17 17 C 1.54906 * 101.58454 * 153.86631 * 16 14 13 18 18 N 1.47416 * 104.83283 * 322.99426 * 17 16 14 19 19 C 1.36941 * 125.64817 * 204.16799 * 18 17 16 20 20 H 1.08000 * 120.00002 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00059 * 359.96464 * 19 18 17 22 22 N 1.31622 * 119.99562 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47353 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46916 * 120.00492 * 23 21 19 26 26 H 1.48500 * 109.47277 * 240.00135 * 23 21 19 27 27 C 1.47018 * 108.70572 * 24.12360 * 18 17 16 28 28 H 1.09004 * 109.88749 * 239.52821 * 27 18 17 29 29 C 1.52999 * 109.88324 * 118.36125 * 27 18 17 30 30 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46951 * 299.99952 * 1 2 3 32 32 H 1.09006 * 109.46991 * 59.99604 * 1 2 3 33 33 H 1.08994 * 109.47102 * 240.00276 * 2 1 3 34 34 H 1.08996 * 109.46601 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46858 * 300.00120 * 3 2 1 36 36 H 1.09002 * 109.47260 * 60.00237 * 3 2 1 37 37 H 1.07995 * 119.60911 * 359.97438 * 6 5 4 38 38 H 1.08005 * 119.46266 * 179.97438 * 8 7 6 39 39 H 1.07996 * 120.46715 * 179.97438 * 9 8 7 40 40 H 0.97009 * 119.99571 * 359.97438 * 13 11 10 41 41 H 1.09008 * 111.00278 * 271.94533 * 16 14 13 42 42 H 1.09003 * 111.00337 * 35.75263 * 16 14 13 43 43 H 1.09008 * 110.36315 * 81.82997 * 17 16 14 44 44 H 1.09000 * 110.36869 * 204.14673 * 17 16 14 45 45 H 0.96992 * 119.99500 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47437 * 302.19420 * 29 27 18 47 47 H 1.09005 * 109.46997 * 62.19021 * 29 27 18 48 48 H 1.08998 * 109.47247 * 182.19114 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1131 -2.0243 1.0977 6 6 1.6650 -2.7123 -0.0231 7 7 1.7670 -4.0227 -0.0948 8 6 2.2927 -4.7401 0.8793 9 6 2.7649 -4.1419 2.0294 10 6 2.6758 -2.7511 2.1583 11 6 3.1631 -2.0673 3.3750 12 8 3.0767 -0.8585 3.4686 13 7 3.7032 -2.7841 4.3804 14 6 4.1856 -2.1066 5.5863 15 1 4.6401 -1.1488 5.3331 16 6 3.0325 -1.9144 6.6066 17 6 3.8085 -1.8579 7.9461 18 7 4.9049 -2.8307 7.7883 19 6 5.5575 -3.4700 8.8084 20 1 6.3509 -4.1687 8.5878 21 6 5.1994 -3.2198 10.1261 22 7 4.2323 -2.3685 10.3948 23 14 6.0902 -4.0914 11.5175 24 1 7.1291 -4.9904 10.9539 25 1 6.7329 -3.0853 12.4007 26 1 5.1170 -4.8909 12.3042 27 6 5.1809 -3.0016 6.3544 28 1 5.0370 -4.0442 6.0708 29 6 6.6155 -2.5685 6.0455 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.2278 -2.1655 -0.8454 38 1 2.3546 -5.8133 0.7749 39 1 3.1931 -4.7388 2.8210 40 1 3.7718 -3.7489 4.3058 41 1 2.5005 -0.9807 6.4235 42 1 2.3477 -2.7622 6.5865 43 1 4.2095 -0.8577 8.1103 44 1 3.1599 -2.1479 8.7727 45 1 3.9818 -2.1940 11.3155 46 1 6.7555 -1.5313 6.3500 47 1 7.3125 -3.2047 6.5911 48 1 6.8004 -2.6611 4.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088769317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:26 Heat of formation + Delta-G solvation = -8.318543 kcal Electronic energy + Delta-G solvation = -29089.558215 eV Core-core repulsion = 25145.888334 eV Total energy + Delta-G solvation = -3943.669880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20771 -39.42145 -38.64639 -37.46547 -34.12440 -33.77091 -32.68757 -31.67770 -30.47028 -30.36146 -28.61287 -27.62969 -25.56648 -24.48836 -24.01116 -23.53952 -21.64637 -20.84668 -20.13148 -19.86901 -18.57210 -17.57201 -17.12510 -16.71437 -15.95623 -15.75891 -15.53765 -14.93374 -14.72298 -14.56144 -14.48195 -14.06344 -13.85269 -13.77681 -13.40124 -13.28650 -12.94432 -12.77659 -12.67869 -12.41963 -12.14745 -12.12139 -11.97447 -11.57824 -11.39150 -11.18702 -11.14697 -10.87685 -10.85614 -10.53942 -10.44611 -10.12989 -10.07645 -9.97985 -9.77373 -9.61208 -9.45871 -8.75636 -8.67814 -8.57372 -6.88888 -5.66748 -3.09790 0.50949 0.85428 2.77757 2.94474 3.20108 3.38408 3.43947 3.46391 3.65868 4.09157 4.29304 4.40283 4.45343 4.49967 4.55404 4.62758 4.69733 4.93429 5.12233 5.20575 5.25237 5.34906 5.40922 5.41248 5.46533 5.52195 5.53737 5.60353 5.63058 5.79995 5.81566 5.87299 6.10853 6.16277 6.24345 6.30453 6.34069 6.53162 6.59669 6.72427 6.85544 7.00778 7.10510 7.51289 7.58541 7.61700 7.69382 7.84357 8.32990 8.38667 9.19254 9.80119 10.43907 11.36586 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002616 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.898356 B =10702.490763 C =11395.835724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.267 6.267 5 C 0.137 3.863 6 C 0.008 3.992 7 N -0.435 5.435 8 C 0.050 3.950 9 C -0.099 4.099 10 C -0.125 4.125 11 C 0.556 3.444 12 O -0.513 6.513 13 N -0.711 5.711 14 C 0.137 3.863 15 H 0.093 0.907 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.156 3.844 28 H 0.036 0.964 29 C -0.155 4.155 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.395 0.605 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.109 0.891 45 H 0.252 0.748 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 0.322 -23.012 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.177 6.177 5 C 0.086 3.914 6 C -0.151 4.151 7 N -0.145 5.145 8 C -0.106 4.106 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.342 3.658 12 O -0.388 6.388 13 N -0.362 5.362 14 C 0.033 3.967 15 H 0.111 0.889 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.048 3.952 28 H 0.053 0.947 29 C -0.215 4.215 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.164 0.836 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.127 0.873 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.263 0.953 -23.238 24.086 hybrid contribution 0.747 -0.563 1.253 1.564 sum -5.516 0.390 -21.985 22.670 Atomic orbital electron populations 1.22412 0.94705 1.03123 1.03648 1.22617 0.94649 0.94426 0.87095 1.21824 1.02376 0.92992 1.03204 1.86453 1.78997 1.14444 1.37775 1.20129 0.92829 0.84692 0.93778 1.23008 1.03553 0.91030 0.97552 1.67356 1.11048 1.06799 1.29276 1.22564 0.97924 1.00577 0.89577 1.22321 0.97307 0.92950 0.99361 1.19990 1.04534 0.93454 0.95648 1.17815 0.78640 0.87070 0.82304 1.90825 1.54677 1.13165 1.80146 1.45965 1.61986 1.10509 1.17758 1.22168 0.95610 0.96215 0.82696 0.88941 1.23403 0.97258 1.00824 0.97752 1.21953 0.89779 0.91756 0.93723 1.44497 1.39753 1.49128 0.98652 1.19066 1.12916 1.18137 0.84682 0.90396 1.24795 0.99088 0.99556 0.97184 1.69808 1.31352 1.37869 1.17826 0.86009 0.78633 0.78635 0.82263 1.20552 1.21775 1.21766 1.20977 0.92026 0.95634 0.86583 0.94681 1.22245 0.98705 1.01850 0.98701 0.91948 0.90943 0.90688 0.90898 0.91467 0.90477 0.90993 0.81895 0.81903 0.83554 0.76958 0.91915 0.92019 0.96736 0.87310 0.93736 0.92879 0.92674 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.07 0.60 2.85 -26.73 -0.08 0.52 16 3 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 4 O -0.27 -3.50 8.03 -39.88 -0.32 -3.82 16 5 C 0.14 1.71 6.64 -38.53 -0.26 1.46 16 6 C 0.01 0.09 9.44 -17.38 -0.16 -0.08 16 7 N -0.43 -4.74 10.32 -13.17 -0.14 -4.87 16 8 C 0.05 0.46 11.16 -17.62 -0.20 0.27 16 9 C -0.10 -0.98 9.61 -39.04 -0.38 -1.35 16 10 C -0.12 -1.63 5.92 -104.54 -0.62 -2.25 16 11 C 0.56 8.86 7.79 -12.34 -0.10 8.76 16 12 O -0.51 -9.99 15.03 -15.87 -0.24 -10.23 16 13 N -0.71 -10.63 5.16 -52.98 -0.27 -10.91 16 14 C 0.14 2.51 2.76 -66.10 -0.18 2.33 16 15 H 0.09 1.82 7.41 -51.93 -0.38 1.43 16 16 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 17 C 0.15 3.72 5.89 -2.54 -0.01 3.71 16 18 N -0.60 -14.69 3.13 -162.58 -0.51 -15.20 16 19 C -0.22 -5.91 9.89 -15.06 -0.15 -6.06 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 23 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.16 3.09 3.48 -66.96 -0.23 2.85 16 28 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 29 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 30 H 0.06 0.47 6.94 -51.93 -0.36 0.11 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 6.33 -51.93 -0.33 0.18 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.16 1.30 5.46 -52.49 -0.29 1.01 16 38 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.15 1.07 6.53 -52.49 -0.34 0.73 16 40 H 0.40 4.80 6.45 -40.82 -0.26 4.54 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -33.12 384.53 -9.02 -42.14 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.28 Total: 4.08 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.59 Total: 2.23 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.36 Total: -56.93 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.56 Total: -14.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.12 -9.02 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088769317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.817 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds