Wall clock time and date at job start Tue Mar 31 2020 17:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 O 1.42898 * 109.47196 * 119.99884 * 2 1 3 5 5 C 1.35665 * 116.99843 * 85.03998 * 4 2 1 6 6 C 1.38941 * 120.57793 * 354.58719 * 5 4 2 7 7 N 1.31634 * 120.79001 * 179.97438 * 6 5 4 8 8 C 1.31904 * 122.14750 * 359.97438 * 7 6 5 9 9 C 1.37970 * 121.07670 * 359.97438 * 8 7 6 10 10 C 1.39956 * 119.06781 * 0.25156 * 9 8 7 11 11 C 1.47832 * 120.96200 * 179.72622 * 10 9 8 12 12 O 1.21553 * 119.99936 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00350 * 0.02562 * 11 10 9 14 14 C 1.46494 * 120.00517 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.64028 * 323.30865 * 14 13 11 16 16 C 1.55157 * 110.72298 * 86.45058 * 14 13 11 17 17 C 1.54906 * 101.58454 * 153.86631 * 16 14 13 18 18 N 1.47416 * 104.83283 * 322.99426 * 17 16 14 19 19 C 1.36941 * 125.64817 * 204.16799 * 18 17 16 20 20 H 1.08000 * 120.00002 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00059 * 359.96464 * 19 18 17 22 22 N 1.31622 * 119.99562 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47353 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46916 * 120.00492 * 23 21 19 26 26 H 1.48500 * 109.47277 * 240.00135 * 23 21 19 27 27 C 1.47018 * 108.70572 * 24.12360 * 18 17 16 28 28 H 1.09004 * 109.88749 * 239.52821 * 27 18 17 29 29 C 1.52999 * 109.88324 * 118.36125 * 27 18 17 30 30 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46951 * 299.99952 * 1 2 3 32 32 H 1.09006 * 109.46991 * 59.99604 * 1 2 3 33 33 H 1.08994 * 109.47102 * 240.00276 * 2 1 3 34 34 H 1.08996 * 109.46601 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46858 * 300.00120 * 3 2 1 36 36 H 1.09002 * 109.47260 * 60.00237 * 3 2 1 37 37 H 1.07995 * 119.60911 * 359.97438 * 6 5 4 38 38 H 1.08005 * 119.46266 * 179.97438 * 8 7 6 39 39 H 1.07996 * 120.46715 * 179.97438 * 9 8 7 40 40 H 0.97009 * 119.99571 * 359.97438 * 13 11 10 41 41 H 1.09008 * 111.00278 * 271.94533 * 16 14 13 42 42 H 1.09003 * 111.00337 * 35.75263 * 16 14 13 43 43 H 1.09008 * 110.36315 * 81.82997 * 17 16 14 44 44 H 1.09000 * 110.36869 * 204.14673 * 17 16 14 45 45 H 0.96992 * 119.99500 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47437 * 302.19420 * 29 27 18 47 47 H 1.09005 * 109.46997 * 62.19021 * 29 27 18 48 48 H 1.08998 * 109.47247 * 182.19114 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1131 -2.0243 1.0977 6 6 1.6650 -2.7123 -0.0231 7 7 1.7670 -4.0227 -0.0948 8 6 2.2927 -4.7401 0.8793 9 6 2.7649 -4.1419 2.0294 10 6 2.6758 -2.7511 2.1583 11 6 3.1631 -2.0673 3.3750 12 8 3.0767 -0.8585 3.4686 13 7 3.7032 -2.7841 4.3804 14 6 4.1856 -2.1066 5.5863 15 1 4.6401 -1.1488 5.3331 16 6 3.0325 -1.9144 6.6066 17 6 3.8085 -1.8579 7.9461 18 7 4.9049 -2.8307 7.7883 19 6 5.5575 -3.4700 8.8084 20 1 6.3509 -4.1687 8.5878 21 6 5.1994 -3.2198 10.1261 22 7 4.2323 -2.3685 10.3948 23 14 6.0902 -4.0914 11.5175 24 1 7.1291 -4.9904 10.9539 25 1 6.7329 -3.0853 12.4007 26 1 5.1170 -4.8909 12.3042 27 6 5.1809 -3.0016 6.3544 28 1 5.0370 -4.0442 6.0708 29 6 6.6155 -2.5685 6.0455 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.2278 -2.1655 -0.8454 38 1 2.3546 -5.8133 0.7749 39 1 3.1931 -4.7388 2.8210 40 1 3.7718 -3.7489 4.3058 41 1 2.5005 -0.9807 6.4235 42 1 2.3477 -2.7622 6.5865 43 1 4.2095 -0.8577 8.1103 44 1 3.1599 -2.1479 8.7727 45 1 3.9818 -2.1940 11.3155 46 1 6.7555 -1.5313 6.3500 47 1 7.3125 -3.2047 6.5911 48 1 6.8004 -2.6611 4.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088769317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:25 Heat of formation + Delta-G solvation = -29.067727 kcal Electronic energy + Delta-G solvation = -29090.457967 eV Core-core repulsion = 25145.888334 eV Total energy + Delta-G solvation = -3944.569632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08924 -40.71213 -39.47388 -39.04308 -35.67026 -34.54654 -34.06921 -32.99834 -32.05179 -31.25534 -30.40812 -28.23194 -26.97182 -25.92343 -25.46922 -24.53740 -22.51459 -22.16932 -21.56799 -21.46120 -19.55497 -18.75560 -18.48724 -18.01333 -17.20883 -16.77235 -16.55508 -16.48176 -15.92174 -15.70482 -15.54905 -15.35079 -15.19264 -14.91730 -14.58328 -14.35413 -14.07130 -14.00205 -13.74675 -13.62665 -13.37216 -13.23236 -13.00370 -12.94528 -12.76503 -12.74232 -12.62373 -12.23865 -12.10774 -12.03455 -11.93798 -11.84713 -11.57867 -11.47271 -11.29021 -10.84812 -10.73945 -10.47203 -10.06227 -9.48840 -8.89942 -7.74235 -5.19423 -0.38167 0.07665 1.49214 1.49967 1.59943 1.85165 1.96187 2.06299 2.52418 2.77297 3.36266 3.38611 3.45179 3.57640 3.65720 3.71297 3.82773 3.86995 3.94536 3.96982 4.09520 4.14637 4.19531 4.43226 4.48894 4.60375 4.63207 4.66537 4.70224 4.77936 4.80459 4.81384 4.84255 4.87151 4.94290 5.03960 5.11245 5.21091 5.24437 5.34587 5.45891 5.50691 5.59424 5.59838 5.79960 6.24788 6.30527 6.50885 6.82073 7.11482 7.17495 7.79129 8.42810 9.28055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002616 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.898356 B =10702.490763 C =11395.835724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 C -0.146 4.146 4 O -0.299 6.299 5 C 0.123 3.877 6 C 0.012 3.988 7 N -0.446 5.446 8 C 0.052 3.948 9 C -0.088 4.088 10 C -0.151 4.151 11 C 0.558 3.442 12 O -0.556 6.556 13 N -0.698 5.698 14 C 0.155 3.845 15 H 0.078 0.922 16 C -0.138 4.138 17 C 0.159 3.841 18 N -0.613 5.613 19 C -0.224 4.224 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.263 1.263 25 H -0.298 1.298 26 H -0.293 1.293 27 C 0.153 3.847 28 H 0.057 0.943 29 C -0.147 4.147 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.186 0.814 38 H 0.198 0.802 39 H 0.174 0.826 40 H 0.412 0.588 41 H 0.061 0.939 42 H 0.070 0.930 43 H -0.016 1.016 44 H 0.078 0.922 45 H 0.245 0.755 46 H 0.034 0.966 47 H 0.050 0.950 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -1.948 -25.647 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 C -0.203 4.203 4 O -0.209 6.209 5 C 0.072 3.928 6 C -0.147 4.147 7 N -0.156 5.156 8 C -0.103 4.103 9 C -0.108 4.108 10 C -0.162 4.162 11 C 0.345 3.655 12 O -0.434 6.434 13 N -0.351 5.351 14 C 0.049 3.951 15 H 0.096 0.904 16 C -0.178 4.178 17 C 0.033 3.967 18 N -0.339 5.339 19 C -0.353 4.353 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.220 1.220 27 C 0.046 3.954 28 H 0.075 0.925 29 C -0.206 4.206 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.202 0.798 38 H 0.215 0.785 39 H 0.191 0.809 40 H 0.251 0.749 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.002 0.998 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.002 -1.363 -25.928 26.648 hybrid contribution 0.654 0.149 1.974 2.085 sum -5.348 -1.214 -23.953 24.573 Atomic orbital electron populations 1.22385 0.93655 1.03182 1.04133 1.22934 0.95544 0.94507 0.86678 1.21866 1.01684 0.92904 1.03817 1.86428 1.79457 1.15050 1.40013 1.20363 0.93297 0.84756 0.94392 1.23279 1.02983 0.91046 0.97390 1.67441 1.11279 1.06900 1.29935 1.23143 0.96473 1.02042 0.88691 1.22604 0.96329 0.91583 1.00274 1.19919 1.06634 0.94880 0.94784 1.18265 0.77629 0.86644 0.82949 1.90805 1.56353 1.15191 1.81072 1.45699 1.61683 1.11246 1.16433 1.21724 0.94223 0.95740 0.83372 0.90420 1.23194 0.97468 1.01137 0.96017 1.21650 0.89784 0.90203 0.95040 1.44729 1.39790 1.48789 1.00547 1.19443 1.12680 1.17727 0.85401 0.89450 1.25622 1.00233 1.00765 0.99633 1.70054 1.32979 1.39557 1.17619 0.84998 0.77683 0.77459 0.79127 1.18743 1.22537 1.22036 1.21181 0.93171 0.96954 0.84106 0.92536 1.22132 0.97318 1.00453 1.00733 0.92056 0.92666 0.87951 0.88864 0.92558 0.87403 0.92783 0.79780 0.78521 0.80904 0.74939 0.92029 0.91176 0.99801 0.90415 0.94501 0.94696 0.93118 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.18 71.98 0.66 -1.70 16 2 C 0.06 0.97 2.85 30.60 0.09 1.06 16 3 C -0.15 -2.23 9.56 71.98 0.69 -1.54 16 4 O -0.30 -7.85 8.03 -69.55 -0.56 -8.41 16 5 C 0.12 2.95 6.64 22.95 0.15 3.10 16 6 C 0.01 0.23 9.44 84.89 0.80 1.03 16 7 N -0.45 -8.38 10.32 -195.58 -2.02 -10.40 16 8 C 0.05 0.78 11.16 84.62 0.94 1.73 16 9 C -0.09 -1.46 9.61 22.62 0.22 -1.24 16 10 C -0.15 -3.71 5.92 -19.81 -0.12 -3.83 16 11 C 0.56 17.38 7.79 86.78 0.68 18.06 16 12 O -0.56 -22.08 15.03 16.38 0.25 -21.84 16 13 N -0.70 -19.73 5.16 -439.81 -2.27 -22.00 16 14 C 0.16 5.58 2.76 46.18 0.13 5.71 16 15 H 0.08 3.08 7.41 -2.39 -0.02 3.07 16 16 C -0.14 -5.63 6.77 31.99 0.22 -5.42 16 17 C 0.16 8.03 5.89 86.86 0.51 8.54 16 18 N -0.61 -30.45 3.13 -668.27 -2.09 -32.54 16 19 C -0.22 -12.02 9.89 84.03 0.83 -11.19 16 20 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 22 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 23 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 C 0.15 5.85 3.48 45.34 0.16 6.01 16 28 H 0.06 1.97 7.69 -2.38 -0.02 1.96 16 29 C -0.15 -5.19 9.14 71.98 0.66 -4.53 16 30 H 0.06 0.83 6.94 -2.39 -0.02 0.81 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.09 1.12 6.33 -2.39 -0.02 1.11 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.19 2.46 5.46 -2.91 -0.02 2.45 16 38 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.17 1.80 6.53 -2.91 -0.02 1.79 16 40 H 0.41 8.77 6.45 -92.70 -0.60 8.17 16 41 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 43 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 44 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 45 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.82 8.04 -2.38 -0.02 1.80 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.77 384.53 3.01 -71.77 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.38 Total: 20.49 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 7.08 Total: 12.33 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -6.16 Total: -121.43 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.31 Total: -30.24 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.77 3.01 -71.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088769317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.698 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds