Wall clock time and date at job start Tue Mar 31 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99892 * 2 1 4 4 C 1.54317 * 109.88560 * 238.89931 * 2 1 3 5 5 H 1.09004 * 110.72299 * 336.93685 * 4 2 1 6 6 N 1.46500 * 110.72041 * 100.02435 * 4 2 1 7 7 C 1.34774 * 120.00298 * 202.55900 * 6 4 2 8 8 O 1.21495 * 119.99960 * 0.02562 * 7 6 4 9 9 C 1.48335 * 119.99975 * 180.02562 * 7 6 4 10 10 N 1.31339 * 127.13368 * 0.02562 * 9 7 6 11 11 O 1.21239 * 111.48231 * 180.02562 * 10 9 7 12 12 C 1.33643 * 111.64442 * 359.68898 * 11 10 9 13 13 C 1.34959 * 106.59767 * 0.49801 * 12 11 10 14 14 C 1.50092 * 126.62012 * 178.97448 * 13 12 11 15 15 C 1.53329 * 108.94431 * 28.01925 * 14 13 12 16 16 C 1.52659 * 109.54753 * 271.48376 * 15 14 13 17 17 C 1.52632 * 110.91219 * 61.42539 * 16 15 14 18 18 C 1.50611 * 127.99322 * 181.24573 * 12 11 10 19 19 C 1.55159 * 103.10700 * 218.48153 * 4 2 1 20 20 C 1.54906 * 101.57879 * 35.41211 * 19 4 2 21 21 N 1.47329 * 110.06205 * 121.16965 * 2 1 3 22 22 C 1.36939 * 125.61446 * 298.24774 * 21 2 1 23 23 H 1.08003 * 119.99796 * 349.69566 * 22 21 2 24 24 C 1.38807 * 119.99869 * 169.69259 * 22 21 2 25 25 N 1.31621 * 120.00121 * 350.47783 * 24 22 21 26 26 Si 1.86805 * 119.99946 * 170.48054 * 24 22 21 27 27 H 1.48498 * 109.46880 * 94.13524 * 26 24 22 28 28 H 1.48498 * 109.47025 * 214.13508 * 26 24 22 29 29 H 1.48499 * 109.46976 * 334.13671 * 26 24 22 30 30 H 1.09000 * 109.46679 * 181.09485 * 1 2 3 31 31 H 1.08992 * 109.47310 * 301.09464 * 1 2 3 32 32 H 1.08994 * 109.46846 * 61.10221 * 1 2 3 33 33 H 0.97004 * 119.99837 * 22.56563 * 6 4 2 34 34 H 1.09001 * 109.55800 * 147.85563 * 14 13 12 35 35 H 1.08998 * 109.56220 * 268.07104 * 14 13 12 36 36 H 1.09004 * 109.46049 * 31.50702 * 15 14 13 37 37 H 1.08999 * 109.46180 * 151.47790 * 15 14 13 38 38 H 1.09005 * 109.19184 * 181.79072 * 16 15 14 39 39 H 1.09002 * 109.19319 * 301.05440 * 16 15 14 40 40 H 1.08994 * 109.39762 * 153.79336 * 17 16 15 41 41 H 1.09001 * 109.38969 * 273.51796 * 17 16 15 42 42 H 1.08999 * 109.54019 * 106.30038 * 18 12 11 43 43 H 1.09003 * 109.53727 * 346.04421 * 18 12 11 44 44 H 1.08993 * 111.00523 * 153.48831 * 19 4 2 45 45 H 1.08998 * 111.00126 * 277.34224 * 19 4 2 46 46 H 1.09000 * 110.36532 * 81.83633 * 20 19 4 47 47 H 1.09001 * 110.36475 * 204.15615 * 20 19 4 48 48 H 0.97000 * 119.99894 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4555 0.1959 -2.2874 7 6 2.5056 -0.2028 -3.5739 8 8 2.2182 -1.3462 -3.8671 9 6 2.9118 0.7545 -4.6317 10 7 3.2499 2.0138 -4.4741 11 8 3.5313 2.5338 -5.5326 12 6 3.4220 1.6731 -6.5491 13 6 3.0148 0.5005 -6.0193 14 6 2.7296 -0.7690 -6.7675 15 6 3.5850 -0.7999 -8.0397 16 6 2.8328 -0.1146 -9.1777 17 6 2.5562 1.3490 -8.8444 18 6 3.7056 1.9199 -8.0075 19 6 3.2870 -1.5178 -0.6956 20 6 2.8161 -1.8831 0.7342 21 7 2.0354 -0.7163 1.1841 22 6 1.8140 -0.3584 2.4872 23 1 1.3703 0.5993 2.7163 24 6 2.1599 -1.2265 3.5137 25 7 2.5237 -2.4608 3.2372 26 14 2.1088 -0.6429 5.2875 27 1 0.7959 -0.9935 5.8863 28 1 3.1953 -1.3012 6.0566 29 1 2.2947 0.8298 5.3296 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8799 32 1 -0.3633 0.4966 -0.8997 33 1 2.6848 1.1089 -2.0534 34 1 2.9771 -1.6255 -6.1405 35 1 1.6735 -0.8056 -7.0350 36 1 4.5242 -0.2772 -7.8585 37 1 3.7921 -1.8345 -8.3129 38 1 3.4322 -0.1679 -10.0866 39 1 1.8864 -0.6295 -9.3429 40 1 2.4631 1.9193 -9.7685 41 1 1.6265 1.4221 -8.2801 42 1 4.6381 1.4288 -8.2858 43 1 3.7892 2.9919 -8.1863 44 1 3.4811 -2.4145 -1.2840 45 1 4.1664 -0.8746 -0.6649 46 1 2.1880 -2.7736 0.7108 47 1 3.6743 -2.0401 1.3877 48 1 2.7651 -3.0675 3.9545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088890247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:04 Heat of formation + Delta-G solvation = 38.331454 kcal Electronic energy + Delta-G solvation = -29115.670041 eV Core-core repulsion = 25174.023056 eV Total energy + Delta-G solvation = -3941.646984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.26816 -39.70612 -38.51858 -37.55710 -34.29395 -34.06847 -32.24819 -32.10299 -31.36468 -30.39951 -28.70158 -26.64131 -25.52855 -25.16887 -24.00753 -23.58317 -21.42713 -20.46754 -20.18114 -20.05993 -19.55194 -18.02068 -17.68439 -16.84476 -16.66112 -15.87865 -15.74149 -15.20632 -14.72951 -14.64537 -14.30113 -14.08379 -13.85642 -13.71838 -13.65571 -13.36777 -12.83327 -12.76788 -12.32999 -12.15453 -12.12824 -12.05286 -11.58358 -11.57026 -11.29297 -11.12593 -10.98901 -10.94917 -10.81681 -10.75984 -10.62260 -10.48230 -10.37773 -10.08533 -9.96782 -9.85734 -9.63999 -9.31993 -8.76011 -8.58497 -6.85111 -5.75565 -3.09149 0.98874 1.50842 2.68332 3.04644 3.19715 3.39139 3.45058 3.46972 3.86124 4.25218 4.34695 4.42426 4.48806 4.53881 4.63591 4.74522 4.92245 4.96862 5.14639 5.24388 5.33925 5.36548 5.40964 5.42009 5.47999 5.51418 5.56473 5.57188 5.67175 5.78040 5.79652 5.83578 5.93263 6.10211 6.11986 6.19457 6.28619 6.32625 6.46619 6.58533 6.65699 6.86092 7.07772 7.48123 7.51578 7.58927 7.77068 7.87757 8.19003 8.24448 9.17131 9.78712 10.45483 11.37180 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002366 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.271344 B =11833.360513 C =12200.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.037 0.963 4 C 0.135 3.865 5 H 0.097 0.903 6 N -0.698 5.698 7 C 0.597 3.403 8 O -0.522 6.522 9 C -0.017 4.017 10 N -0.334 5.334 11 O 0.123 5.877 12 C -0.040 4.040 13 C -0.145 4.145 14 C -0.048 4.048 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.037 4.037 19 C -0.155 4.155 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.404 0.596 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.072 0.928 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 7.486 -26.758 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.115 0.885 6 N -0.348 5.348 7 C 0.380 3.620 8 O -0.397 6.397 9 C -0.175 4.175 10 N -0.036 5.036 11 O 0.049 5.951 12 C -0.103 4.103 13 C -0.150 4.150 14 C -0.085 4.085 15 C -0.163 4.163 16 C -0.160 4.160 17 C -0.155 4.155 18 C -0.075 4.075 19 C -0.194 4.194 20 C 0.050 3.950 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.239 0.761 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.246 7.308 -25.594 26.711 hybrid contribution -0.095 0.176 0.776 0.802 sum 2.152 7.484 -24.817 26.010 Atomic orbital electron populations 1.22218 0.97638 1.01568 0.99937 1.21075 0.92668 0.94887 0.86745 0.94519 1.22247 0.97751 0.90665 0.86230 0.88507 1.45980 1.67288 1.15670 1.05888 1.16822 0.78036 0.85777 0.81394 1.90772 1.49019 1.18024 1.81876 1.23309 1.06327 0.92420 0.95489 1.74430 1.14834 1.09683 1.04617 1.84757 1.63030 1.36444 1.10877 1.24091 1.04092 0.88938 0.93213 1.20670 1.05027 0.97834 0.91493 1.20021 1.00516 0.92957 0.95036 1.21751 0.98975 1.01357 0.94184 1.21563 1.01040 0.95140 0.98305 1.21590 0.97861 0.96378 0.99676 1.20261 1.00555 1.03201 0.83482 1.23415 0.96716 0.99446 0.99862 1.21408 0.95740 0.89402 0.88476 1.44565 1.58415 1.28856 1.00082 1.18965 1.36408 0.99774 0.80353 0.90604 1.24829 1.02088 0.95376 0.98007 1.69955 1.51249 1.04222 1.30922 0.86134 0.77274 0.77855 0.84660 1.21618 1.21622 1.20615 0.92778 0.92531 0.94450 0.76091 0.88845 0.89979 0.91255 0.90955 0.91661 0.91413 0.90436 0.91243 0.88172 0.89277 0.91657 0.91946 0.95196 0.90926 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.15 37.16 0.34 -2.63 16 2 C 0.15 3.18 3.49 -66.79 -0.23 2.95 16 3 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 4 C 0.14 2.53 2.79 -66.10 -0.18 2.35 16 5 H 0.10 1.91 7.33 -51.93 -0.38 1.53 16 6 N -0.70 -11.43 5.19 -52.82 -0.27 -11.70 16 7 C 0.60 9.82 7.85 -12.11 -0.10 9.73 16 8 O -0.52 -9.66 15.18 5.37 0.08 -9.58 16 9 C -0.02 -0.24 7.19 -82.70 -0.60 -0.83 16 10 N -0.33 -4.57 11.88 33.32 0.40 -4.17 16 11 O 0.12 1.41 11.18 18.12 0.20 1.62 16 12 C -0.04 -0.38 6.63 -35.52 -0.24 -0.61 16 13 C -0.15 -1.68 5.72 -104.86 -0.60 -2.28 16 14 C -0.05 -0.47 5.37 -28.01 -0.15 -0.62 16 15 C -0.13 -0.85 5.55 -26.74 -0.15 -0.99 16 16 C -0.12 -0.62 5.64 -27.09 -0.15 -0.77 16 17 C -0.12 -0.57 5.63 -26.81 -0.15 -0.73 16 18 C -0.04 -0.20 5.56 -27.82 -0.15 -0.36 16 19 C -0.15 -3.10 6.77 -24.58 -0.17 -3.26 16 20 C 0.17 4.27 5.42 -2.53 -0.01 4.26 16 21 N -0.59 -14.94 3.14 -162.35 -0.51 -15.45 16 22 C -0.23 -6.23 9.88 -15.06 -0.15 -6.38 16 23 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 24 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 25 N -0.92 -26.85 10.69 55.49 0.59 -26.25 16 26 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 6.12 8.11 -40.82 -0.33 5.79 16 34 H 0.09 1.12 7.08 -51.93 -0.37 0.75 16 35 H 0.08 0.78 7.84 -51.93 -0.41 0.38 16 36 H 0.07 0.46 5.69 -51.93 -0.30 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 42 H 0.10 0.44 6.37 -51.93 -0.33 0.11 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.07 1.95 6.94 -51.93 -0.36 1.59 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -31.45 376.53 -9.11 -40.56 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.46 Total: 2.75 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.78 Total: -0.45 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.21 Total: -57.58 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.28 Total: -7.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.45 -9.11 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088890247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.890 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds