Wall clock time and date at job start Tue Mar 31 2020 17:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99892 * 2 1 4 4 C 1.54317 * 109.88560 * 238.89931 * 2 1 3 5 5 H 1.09004 * 110.72299 * 336.93685 * 4 2 1 6 6 N 1.46500 * 110.72041 * 100.02435 * 4 2 1 7 7 C 1.34774 * 120.00298 * 202.55900 * 6 4 2 8 8 O 1.21495 * 119.99960 * 0.02562 * 7 6 4 9 9 C 1.48335 * 119.99975 * 180.02562 * 7 6 4 10 10 N 1.31339 * 127.13368 * 0.02562 * 9 7 6 11 11 O 1.21239 * 111.48231 * 180.02562 * 10 9 7 12 12 C 1.33643 * 111.64442 * 359.68898 * 11 10 9 13 13 C 1.34959 * 106.59767 * 0.49801 * 12 11 10 14 14 C 1.50092 * 126.62012 * 178.97448 * 13 12 11 15 15 C 1.53329 * 108.94431 * 28.01925 * 14 13 12 16 16 C 1.52659 * 109.54753 * 271.48376 * 15 14 13 17 17 C 1.52632 * 110.91219 * 61.42539 * 16 15 14 18 18 C 1.50611 * 127.99322 * 181.24573 * 12 11 10 19 19 C 1.55159 * 103.10700 * 218.48153 * 4 2 1 20 20 C 1.54906 * 101.57879 * 35.41211 * 19 4 2 21 21 N 1.47329 * 110.06205 * 121.16965 * 2 1 3 22 22 C 1.36939 * 125.61446 * 298.24774 * 21 2 1 23 23 H 1.08003 * 119.99796 * 349.69566 * 22 21 2 24 24 C 1.38807 * 119.99869 * 169.69259 * 22 21 2 25 25 N 1.31621 * 120.00121 * 350.47783 * 24 22 21 26 26 Si 1.86805 * 119.99946 * 170.48054 * 24 22 21 27 27 H 1.48498 * 109.46880 * 94.13524 * 26 24 22 28 28 H 1.48498 * 109.47025 * 214.13508 * 26 24 22 29 29 H 1.48499 * 109.46976 * 334.13671 * 26 24 22 30 30 H 1.09000 * 109.46679 * 181.09485 * 1 2 3 31 31 H 1.08992 * 109.47310 * 301.09464 * 1 2 3 32 32 H 1.08994 * 109.46846 * 61.10221 * 1 2 3 33 33 H 0.97004 * 119.99837 * 22.56563 * 6 4 2 34 34 H 1.09001 * 109.55800 * 147.85563 * 14 13 12 35 35 H 1.08998 * 109.56220 * 268.07104 * 14 13 12 36 36 H 1.09004 * 109.46049 * 31.50702 * 15 14 13 37 37 H 1.08999 * 109.46180 * 151.47790 * 15 14 13 38 38 H 1.09005 * 109.19184 * 181.79072 * 16 15 14 39 39 H 1.09002 * 109.19319 * 301.05440 * 16 15 14 40 40 H 1.08994 * 109.39762 * 153.79336 * 17 16 15 41 41 H 1.09001 * 109.38969 * 273.51796 * 17 16 15 42 42 H 1.08999 * 109.54019 * 106.30038 * 18 12 11 43 43 H 1.09003 * 109.53727 * 346.04421 * 18 12 11 44 44 H 1.08993 * 111.00523 * 153.48831 * 19 4 2 45 45 H 1.08998 * 111.00126 * 277.34224 * 19 4 2 46 46 H 1.09000 * 110.36532 * 81.83633 * 20 19 4 47 47 H 1.09001 * 110.36475 * 204.15615 * 20 19 4 48 48 H 0.97000 * 119.99894 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4555 0.1959 -2.2874 7 6 2.5056 -0.2028 -3.5739 8 8 2.2182 -1.3462 -3.8671 9 6 2.9118 0.7545 -4.6317 10 7 3.2499 2.0138 -4.4741 11 8 3.5313 2.5338 -5.5326 12 6 3.4220 1.6731 -6.5491 13 6 3.0148 0.5005 -6.0193 14 6 2.7296 -0.7690 -6.7675 15 6 3.5850 -0.7999 -8.0397 16 6 2.8328 -0.1146 -9.1777 17 6 2.5562 1.3490 -8.8444 18 6 3.7056 1.9199 -8.0075 19 6 3.2870 -1.5178 -0.6956 20 6 2.8161 -1.8831 0.7342 21 7 2.0354 -0.7163 1.1841 22 6 1.8140 -0.3584 2.4872 23 1 1.3703 0.5993 2.7163 24 6 2.1599 -1.2265 3.5137 25 7 2.5237 -2.4608 3.2372 26 14 2.1088 -0.6429 5.2875 27 1 0.7959 -0.9935 5.8863 28 1 3.1953 -1.3012 6.0566 29 1 2.2947 0.8298 5.3296 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8799 32 1 -0.3633 0.4966 -0.8997 33 1 2.6848 1.1089 -2.0534 34 1 2.9771 -1.6255 -6.1405 35 1 1.6735 -0.8056 -7.0350 36 1 4.5242 -0.2772 -7.8585 37 1 3.7921 -1.8345 -8.3129 38 1 3.4322 -0.1679 -10.0866 39 1 1.8864 -0.6295 -9.3429 40 1 2.4631 1.9193 -9.7685 41 1 1.6265 1.4221 -8.2801 42 1 4.6381 1.4288 -8.2858 43 1 3.7892 2.9919 -8.1863 44 1 3.4811 -2.4145 -1.2840 45 1 4.1664 -0.8746 -0.6649 46 1 2.1880 -2.7736 0.7108 47 1 3.6743 -2.0401 1.3877 48 1 2.7651 -3.0675 3.9545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088890247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:03 Heat of formation + Delta-G solvation = 19.547748 kcal Electronic energy + Delta-G solvation = -29116.484563 eV Core-core repulsion = 25174.023056 eV Total energy + Delta-G solvation = -3942.461507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.22381 -41.12974 -39.35848 -38.97384 -35.76421 -35.17852 -33.89984 -32.90753 -32.22557 -32.10275 -30.55850 -27.50737 -26.86683 -25.94325 -25.77798 -24.91183 -22.47244 -22.09797 -21.62738 -20.96710 -20.58467 -18.98492 -18.73399 -18.65484 -17.86502 -17.37100 -16.66194 -16.39529 -16.07722 -15.82845 -15.69321 -15.65520 -15.15707 -14.64524 -14.42157 -14.36495 -14.22995 -14.05014 -13.89457 -13.38600 -13.28522 -12.97128 -12.93593 -12.86421 -12.82597 -12.62832 -12.36324 -12.21428 -12.12044 -11.98798 -11.78286 -11.67168 -11.61615 -11.57619 -11.38906 -11.38114 -11.16087 -10.71338 -10.22693 -10.09946 -8.91547 -7.88521 -5.24132 -0.02536 0.61454 1.46017 1.47134 1.56566 1.69815 1.95857 1.97508 2.48658 2.80017 3.31369 3.40199 3.56165 3.65396 3.73632 3.83055 3.90620 3.95559 4.07009 4.11977 4.15820 4.28967 4.39973 4.42483 4.45198 4.53268 4.54835 4.72895 4.75957 4.82035 4.84702 4.90112 4.95450 4.95654 5.01504 5.08946 5.19966 5.26117 5.30245 5.36416 5.43911 5.44817 5.46614 5.53186 5.54797 5.66473 6.17206 6.21859 6.83415 6.98668 7.05214 7.72454 8.38868 9.23591 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002366 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.271344 B =11833.360513 C =12200.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.049 0.951 4 C 0.152 3.848 5 H 0.089 0.911 6 N -0.692 5.692 7 C 0.598 3.402 8 O -0.547 6.547 9 C -0.042 4.042 10 N -0.349 5.349 11 O 0.132 5.868 12 C -0.018 4.018 13 C -0.162 4.162 14 C -0.046 4.046 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.037 4.037 19 C -0.139 4.139 20 C 0.183 3.817 21 N -0.612 5.612 22 C -0.234 4.234 23 H 0.082 0.918 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.977 3.023 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.268 1.268 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.001 0.999 47 H 0.041 0.959 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 9.780 -29.507 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.044 3.956 3 H 0.067 0.933 4 C 0.047 3.953 5 H 0.107 0.893 6 N -0.343 5.343 7 C 0.383 3.617 8 O -0.423 6.423 9 C -0.199 4.199 10 N -0.050 5.050 11 O 0.056 5.944 12 C -0.082 4.082 13 C -0.167 4.167 14 C -0.084 4.084 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.075 4.075 19 C -0.179 4.179 20 C 0.058 3.942 21 N -0.338 5.338 22 C -0.363 4.363 23 H 0.100 0.900 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.805 3.195 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.193 1.193 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.019 0.981 47 H 0.059 0.941 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.575 9.639 -28.357 30.060 hybrid contribution -0.202 -0.490 1.517 1.607 sum 2.373 9.149 -26.840 28.455 Atomic orbital electron populations 1.22095 0.96340 1.00892 1.01090 1.21242 0.93604 0.94993 0.85808 0.93325 1.21852 0.96657 0.90571 0.86183 0.89294 1.45793 1.67465 1.15532 1.05513 1.17084 0.77180 0.85859 0.81561 1.90758 1.50015 1.19263 1.82298 1.23115 1.08238 0.92602 0.95981 1.74415 1.15385 1.09393 1.05769 1.84728 1.62183 1.36553 1.10963 1.24818 1.01489 0.87530 0.94317 1.20915 1.05962 0.99290 0.90566 1.20020 1.01118 0.91241 0.95985 1.21746 0.98707 1.02178 0.93157 1.21559 1.01048 0.95014 0.98150 1.21612 0.96749 0.96559 1.00381 1.20584 1.01493 1.05162 0.80260 1.23222 0.97415 1.00146 0.97103 1.21125 0.94038 0.88671 0.90394 1.44794 1.59024 1.29147 1.00802 1.19325 1.35478 0.99906 0.81593 0.89988 1.25656 1.02528 0.95579 1.01985 1.70152 1.52660 1.05297 1.31648 0.85096 0.76822 0.77859 0.79721 1.21441 1.22122 1.19261 0.94281 0.93220 0.91437 0.75166 0.91601 0.90151 0.90783 0.90503 0.89590 0.91627 0.87882 0.92860 0.86285 0.86867 0.90834 0.91241 0.98111 0.94079 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 9.15 71.98 0.66 -4.85 16 2 C 0.15 6.16 3.49 45.28 0.16 6.32 16 3 H 0.05 1.91 7.70 -2.39 -0.02 1.90 16 4 C 0.15 5.72 2.79 46.18 0.13 5.85 16 5 H 0.09 3.53 7.33 -2.38 -0.02 3.52 16 6 N -0.69 -22.34 5.19 -439.32 -2.28 -24.62 16 7 C 0.60 19.71 7.85 86.93 0.68 20.39 16 8 O -0.55 -20.58 15.18 -3.70 -0.06 -20.64 16 9 C -0.04 -1.19 7.19 42.70 0.31 -0.88 16 10 N -0.35 -9.16 11.88 -49.02 -0.58 -9.75 16 11 O 0.13 2.77 11.18 74.91 0.84 3.61 16 12 C -0.02 -0.29 6.63 24.90 0.17 -0.13 16 13 C -0.16 -3.59 5.72 -20.02 -0.11 -3.70 16 14 C -0.05 -0.89 5.37 29.77 0.16 -0.73 16 15 C -0.12 -1.38 5.55 30.59 0.17 -1.21 16 16 C -0.12 -0.83 5.64 30.36 0.17 -0.65 16 17 C -0.12 -0.71 5.63 30.54 0.17 -0.54 16 18 C -0.04 -0.26 5.56 29.89 0.17 -0.09 16 19 C -0.14 -5.66 6.77 31.99 0.22 -5.44 16 20 C 0.18 9.31 5.42 86.85 0.47 9.78 16 21 N -0.61 -31.37 3.14 -667.56 -2.10 -33.47 16 22 C -0.23 -13.01 9.88 84.03 0.83 -12.18 16 23 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 24 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 25 N -0.95 -57.53 10.69 21.65 0.23 -57.29 16 26 Si 0.98 45.92 29.56 68.60 2.03 47.95 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.93 8.06 -2.39 -0.02 1.91 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.41 12.11 8.11 -92.71 -0.75 11.36 16 34 H 0.07 1.63 7.08 -2.39 -0.02 1.61 16 35 H 0.08 1.53 7.84 -2.39 -0.02 1.51 16 36 H 0.07 0.78 5.69 -2.38 -0.01 0.77 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.06 0.51 8.09 -2.39 -0.02 0.49 16 40 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.05 0.53 7.79 -2.39 -0.02 0.51 16 42 H 0.12 0.50 6.37 -2.39 -0.02 0.48 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.00 0.05 8.07 -2.39 -0.02 0.03 16 47 H 0.04 2.32 6.94 -2.39 -0.02 2.30 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.35 376.53 3.11 -67.24 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.23 Total: 18.23 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 4.80 Total: 8.73 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.73 Total: -125.13 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.78 Total: -17.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.35 3.11 -67.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088890247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.784 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds