Wall clock time and date at job start Tue Mar 31 2020 17:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87113 * 2 1 4 4 C 1.54316 * 110.01285 * 238.89788 * 2 1 3 5 5 H 1.09006 * 110.72163 * 336.68361 * 4 2 1 6 6 N 1.46502 * 110.72041 * 99.77749 * 4 2 1 7 7 C 1.34775 * 120.00159 * 205.00389 * 6 4 2 8 8 O 1.21617 * 119.99944 * 359.97438 * 7 6 4 9 9 C 1.47423 * 120.00148 * 180.02562 * 7 6 4 10 10 C 1.36085 * 126.45113 * 179.68838 * 9 7 6 11 11 O 1.34254 * 106.95473 * 179.83750 * 10 9 7 12 12 C 1.34055 * 108.22294 * 0.42389 * 11 10 9 13 13 C 1.50700 * 125.37930 * 179.69454 * 12 11 10 14 14 C 1.54270 * 110.02889 * 57.95152 * 13 12 11 15 15 C 1.54965 * 104.15772 * 217.13227 * 14 13 12 16 16 C 1.54898 * 102.77554 * 37.88818 * 15 14 13 17 17 C 1.53868 * 110.03350 * 300.73392 * 13 12 11 18 18 N 1.29941 * 109.24519 * 359.73036 * 12 11 10 19 19 C 1.55154 * 102.94833 * 218.31900 * 4 2 1 20 20 C 1.54916 * 101.58051 * 35.50038 * 19 4 2 21 21 N 1.47025 * 109.88203 * 121.01516 * 2 1 3 22 22 C 1.36942 * 125.64778 * 298.49564 * 21 2 1 23 23 H 1.08008 * 119.99685 * 349.85233 * 22 21 2 24 24 C 1.38807 * 119.99988 * 169.85840 * 22 21 2 25 25 N 1.31612 * 120.00094 * 350.47350 * 24 22 21 26 26 Si 1.86804 * 119.99815 * 170.47701 * 24 22 21 27 27 H 1.48494 * 109.47252 * 94.13284 * 26 24 22 28 28 H 1.48507 * 109.46897 * 214.13389 * 26 24 22 29 29 H 1.48505 * 109.47320 * 334.12969 * 26 24 22 30 30 H 1.09000 * 109.47075 * 300.43879 * 1 2 3 31 31 H 1.08998 * 109.47010 * 60.43984 * 1 2 3 32 32 H 1.09003 * 109.46935 * 180.44080 * 1 2 3 33 33 H 0.96998 * 119.99840 * 24.99892 * 6 4 2 34 34 H 1.08008 * 126.52602 * 359.97438 * 10 9 7 35 35 H 1.09001 * 110.01480 * 179.33368 * 13 12 11 36 36 H 1.08995 * 110.48734 * 335.77658 * 14 13 12 37 37 H 1.09001 * 110.48762 * 98.43022 * 14 13 12 38 38 H 1.09000 * 110.72446 * 279.57420 * 15 14 13 39 39 H 1.08998 * 110.92094 * 156.29058 * 15 14 13 40 40 H 1.09001 * 110.48469 * 203.40694 * 16 15 14 41 41 H 1.09000 * 110.59833 * 80.81505 * 16 15 14 42 42 H 1.09004 * 110.02940 * 238.56763 * 17 13 12 43 43 H 1.08995 * 110.03111 * 359.97438 * 17 13 12 44 44 H 1.09002 * 111.00206 * 277.43278 * 19 4 2 45 45 H 1.08990 * 111.01063 * 153.57566 * 19 4 2 46 46 H 1.08998 * 110.36828 * 204.15773 * 20 19 4 47 47 H 1.08998 * 110.36556 * 81.82890 * 20 19 4 48 48 H 0.97000 * 120.00138 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7490 -1.2415 5 1 1.3104 -1.4473 -1.6177 6 7 2.4542 0.1968 -2.2879 7 6 2.4584 -0.1896 -3.5791 8 8 2.1339 -1.3236 -3.8755 9 6 2.8575 0.7620 -4.6320 10 6 2.9149 0.5118 -5.9684 11 8 3.3201 1.6458 -6.5620 12 6 3.5166 2.5697 -5.6108 13 6 3.9819 3.9830 -5.8500 14 6 3.0079 4.7057 -6.8034 15 6 3.9257 5.5934 -7.6815 16 6 5.1678 4.6935 -7.8976 17 6 5.3546 3.9755 -6.5451 18 7 3.2433 2.0541 -4.4498 19 6 3.2919 -1.5108 -0.6893 20 6 2.8177 -1.8763 0.7395 21 7 2.0301 -0.7124 1.1849 22 6 1.8022 -0.3540 2.4868 23 1 1.3534 0.6020 2.7131 24 6 2.1482 -1.2192 3.5156 25 7 2.5187 -2.4521 3.2420 26 14 2.0880 -0.6336 5.2885 27 1 0.7745 -0.9893 5.8829 28 1 3.1746 -1.2861 6.0624 29 1 2.2672 0.8400 5.3295 30 1 -0.3633 0.5206 0.8860 31 1 -0.3633 0.5070 -0.8939 32 1 -0.3633 -1.0277 0.0079 33 1 2.7133 1.1011 -2.0514 34 1 2.6774 -0.4209 -6.4586 35 1 4.0454 4.5201 -4.9037 36 1 2.4720 3.9842 -7.4201 37 1 2.3075 5.3211 -6.2387 38 1 4.1980 6.5073 -7.1535 39 1 3.4474 5.8265 -8.6327 40 1 6.0425 5.3003 -8.1314 41 1 4.9834 3.9697 -8.6914 42 1 6.0842 4.5097 -5.9364 43 1 5.6845 2.9497 -6.7090 44 1 4.1682 -0.8634 -0.6564 45 1 3.4922 -2.4074 -1.2757 46 1 3.6743 -2.0284 1.3962 47 1 2.1937 -2.7697 0.7152 48 1 2.7601 -3.0569 3.9610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088948334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:34 Heat of formation + Delta-G solvation = -3.674239 kcal Electronic energy + Delta-G solvation = -28493.898361 eV Core-core repulsion = 24550.429873 eV Total energy + Delta-G solvation = -3943.468488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66309 -39.56804 -38.50684 -37.51521 -35.05536 -33.95286 -32.00225 -31.54014 -30.35974 -29.22529 -28.77473 -28.31517 -25.39716 -23.97630 -23.48401 -22.73253 -21.25832 -21.02046 -20.20006 -20.10795 -19.42836 -17.98639 -17.03925 -16.80706 -16.69171 -16.08430 -15.94159 -15.64251 -14.68694 -14.55395 -14.25612 -14.14009 -13.99829 -13.83910 -13.68685 -13.27795 -12.75681 -12.28626 -12.09332 -12.05601 -12.01447 -11.62575 -11.57302 -11.52871 -11.38621 -11.22461 -11.08688 -11.06203 -11.01120 -10.91051 -10.75844 -10.58408 -10.43727 -10.06417 -9.92500 -9.80575 -9.61208 -9.20745 -8.65397 -8.54154 -6.81807 -5.73113 -3.06436 0.96019 1.85028 2.31785 3.19301 3.35211 3.40584 3.46342 3.48270 3.59682 4.05826 4.09339 4.41553 4.50680 4.67419 4.74886 4.90381 4.95948 4.99213 5.06844 5.16825 5.29903 5.32190 5.37206 5.44022 5.45231 5.47010 5.53966 5.59945 5.62050 5.67514 5.76260 5.82292 5.85400 5.90148 6.16955 6.25520 6.34379 6.37687 6.52305 6.64355 6.70527 6.91432 7.11883 7.28588 7.51834 7.60334 7.75641 7.79877 8.25824 8.33251 9.19817 9.81773 10.48729 11.39677 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002275 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.701010 B =12306.761019 C =12951.630040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.097 0.903 6 N -0.695 5.695 7 C 0.599 3.401 8 O -0.540 6.540 9 C -0.065 4.065 10 C 0.006 3.994 11 O -0.195 6.195 12 C 0.203 3.797 13 C 0.003 3.997 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.120 4.120 18 N -0.458 5.458 19 C -0.155 4.155 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.407 0.593 34 H 0.231 0.769 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.030 0.970 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 14.214 -24.108 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.115 0.885 6 N -0.344 5.344 7 C 0.383 3.617 8 O -0.418 6.418 9 C -0.185 4.185 10 C -0.068 4.068 11 O -0.081 6.081 12 C -0.006 4.006 13 C -0.017 4.017 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.162 4.162 17 C -0.159 4.159 18 N -0.187 5.187 19 C -0.195 4.195 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.564 5.564 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.934 13.618 -23.486 27.432 hybrid contribution -0.072 0.082 0.554 0.565 sum 3.862 13.700 -22.932 26.991 Atomic orbital electron populations 1.22224 0.97753 1.01450 0.99921 1.21020 0.92635 0.94911 0.86772 0.94565 1.22208 0.97689 0.90791 0.86326 0.88546 1.45880 1.66509 1.16562 1.05408 1.16725 0.77707 0.85429 0.81823 1.90820 1.49490 1.19069 1.82440 1.21922 1.09539 0.92619 0.94409 1.25290 0.99254 0.89697 0.92544 1.84352 1.64563 1.19660 1.39485 1.26190 0.99790 0.93930 0.80660 1.20490 0.95679 0.83370 1.02113 1.22511 0.97402 0.98724 0.97222 1.22515 0.95664 0.98097 0.99836 1.22385 0.98340 0.98588 0.96923 1.22254 0.95120 1.01877 0.96618 1.70815 1.15452 1.06975 1.25484 1.23411 0.96814 0.99448 0.99780 1.21410 0.95617 0.89470 0.88573 1.44488 1.58212 1.29119 1.00099 1.18962 1.36090 0.99922 0.80411 0.90616 1.24825 1.02146 0.95404 0.97979 1.69954 1.51210 1.04386 1.30816 0.86140 0.77248 0.77848 0.84721 1.21652 1.21651 1.20624 0.92580 0.94473 0.92876 0.75764 0.75313 0.86391 0.90815 0.90366 0.90920 0.91001 0.91121 0.91291 0.90255 0.91156 0.91927 0.91769 0.90987 0.95233 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.15 37.16 0.34 -2.66 16 2 C 0.15 3.22 3.47 -66.95 -0.23 2.98 16 3 H 0.04 0.74 7.72 -51.93 -0.40 0.34 16 4 C 0.13 2.55 2.84 -66.10 -0.19 2.36 16 5 H 0.10 1.94 7.26 -51.93 -0.38 1.56 16 6 N -0.69 -11.46 5.18 -53.10 -0.28 -11.74 16 7 C 0.60 9.85 7.81 -12.52 -0.10 9.75 16 8 O -0.54 -10.19 16.53 5.26 0.09 -10.10 16 9 C -0.06 -0.90 6.99 -83.02 -0.58 -1.48 16 10 C 0.01 0.06 11.94 29.96 0.36 0.42 16 11 O -0.19 -2.02 10.58 6.50 0.07 -1.95 16 12 C 0.20 2.14 6.50 -13.08 -0.08 2.06 16 13 C 0.00 0.02 3.44 -90.65 -0.31 -0.29 16 14 C -0.12 -0.71 6.36 -25.03 -0.16 -0.87 16 15 C -0.12 -0.55 6.91 -24.69 -0.17 -0.72 16 16 C -0.12 -0.60 6.83 -25.07 -0.17 -0.77 16 17 C -0.12 -0.73 6.45 -25.62 -0.17 -0.89 16 18 N -0.46 -5.98 11.06 -7.65 -0.08 -6.07 16 19 C -0.15 -3.12 6.78 -24.58 -0.17 -3.29 16 20 C 0.17 4.28 5.42 -2.53 -0.01 4.27 16 21 N -0.59 -15.01 3.13 -162.57 -0.51 -15.52 16 22 C -0.23 -6.21 9.83 -15.06 -0.15 -6.36 16 23 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 24 C -0.01 -0.19 5.40 -17.44 -0.09 -0.29 16 25 N -0.92 -26.93 10.69 55.49 0.59 -26.33 16 26 Si 0.91 22.05 29.56 -169.99 -5.03 17.03 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 6.25 8.10 -40.82 -0.33 5.92 16 34 H 0.23 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.95 6.94 -51.93 -0.36 1.58 16 47 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -32.29 389.44 -8.89 -41.18 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.72 Total: 3.39 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.89 Total: 4.23 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.28 Total: -59.66 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.16 Total: -12.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.29 -8.89 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088948334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.506 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds