Wall clock time and date at job start Tue Mar 31 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87113 * 2 1 4 4 C 1.54316 * 110.01285 * 238.89788 * 2 1 3 5 5 H 1.09006 * 110.72163 * 336.68361 * 4 2 1 6 6 N 1.46502 * 110.72041 * 99.77749 * 4 2 1 7 7 C 1.34775 * 120.00159 * 205.00389 * 6 4 2 8 8 O 1.21617 * 119.99944 * 359.97438 * 7 6 4 9 9 C 1.47423 * 120.00148 * 180.02562 * 7 6 4 10 10 C 1.36085 * 126.45113 * 179.68838 * 9 7 6 11 11 O 1.34254 * 106.95473 * 179.83750 * 10 9 7 12 12 C 1.34055 * 108.22294 * 0.42389 * 11 10 9 13 13 C 1.50700 * 125.37930 * 179.69454 * 12 11 10 14 14 C 1.54270 * 110.02889 * 57.95152 * 13 12 11 15 15 C 1.54965 * 104.15772 * 217.13227 * 14 13 12 16 16 C 1.54898 * 102.77554 * 37.88818 * 15 14 13 17 17 C 1.53868 * 110.03350 * 300.73392 * 13 12 11 18 18 N 1.29941 * 109.24519 * 359.73036 * 12 11 10 19 19 C 1.55154 * 102.94833 * 218.31900 * 4 2 1 20 20 C 1.54916 * 101.58051 * 35.50038 * 19 4 2 21 21 N 1.47025 * 109.88203 * 121.01516 * 2 1 3 22 22 C 1.36942 * 125.64778 * 298.49564 * 21 2 1 23 23 H 1.08008 * 119.99685 * 349.85233 * 22 21 2 24 24 C 1.38807 * 119.99988 * 169.85840 * 22 21 2 25 25 N 1.31612 * 120.00094 * 350.47350 * 24 22 21 26 26 Si 1.86804 * 119.99815 * 170.47701 * 24 22 21 27 27 H 1.48494 * 109.47252 * 94.13284 * 26 24 22 28 28 H 1.48507 * 109.46897 * 214.13389 * 26 24 22 29 29 H 1.48505 * 109.47320 * 334.12969 * 26 24 22 30 30 H 1.09000 * 109.47075 * 300.43879 * 1 2 3 31 31 H 1.08998 * 109.47010 * 60.43984 * 1 2 3 32 32 H 1.09003 * 109.46935 * 180.44080 * 1 2 3 33 33 H 0.96998 * 119.99840 * 24.99892 * 6 4 2 34 34 H 1.08008 * 126.52602 * 359.97438 * 10 9 7 35 35 H 1.09001 * 110.01480 * 179.33368 * 13 12 11 36 36 H 1.08995 * 110.48734 * 335.77658 * 14 13 12 37 37 H 1.09001 * 110.48762 * 98.43022 * 14 13 12 38 38 H 1.09000 * 110.72446 * 279.57420 * 15 14 13 39 39 H 1.08998 * 110.92094 * 156.29058 * 15 14 13 40 40 H 1.09001 * 110.48469 * 203.40694 * 16 15 14 41 41 H 1.09000 * 110.59833 * 80.81505 * 16 15 14 42 42 H 1.09004 * 110.02940 * 238.56763 * 17 13 12 43 43 H 1.08995 * 110.03111 * 359.97438 * 17 13 12 44 44 H 1.09002 * 111.00206 * 277.43278 * 19 4 2 45 45 H 1.08990 * 111.01063 * 153.57566 * 19 4 2 46 46 H 1.08998 * 110.36828 * 204.15773 * 20 19 4 47 47 H 1.08998 * 110.36556 * 81.82890 * 20 19 4 48 48 H 0.97000 * 120.00138 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7490 -1.2415 5 1 1.3104 -1.4473 -1.6177 6 7 2.4542 0.1968 -2.2879 7 6 2.4584 -0.1896 -3.5791 8 8 2.1339 -1.3236 -3.8755 9 6 2.8575 0.7620 -4.6320 10 6 2.9149 0.5118 -5.9684 11 8 3.3201 1.6458 -6.5620 12 6 3.5166 2.5697 -5.6108 13 6 3.9819 3.9830 -5.8500 14 6 3.0079 4.7057 -6.8034 15 6 3.9257 5.5934 -7.6815 16 6 5.1678 4.6935 -7.8976 17 6 5.3546 3.9755 -6.5451 18 7 3.2433 2.0541 -4.4498 19 6 3.2919 -1.5108 -0.6893 20 6 2.8177 -1.8763 0.7395 21 7 2.0301 -0.7124 1.1849 22 6 1.8022 -0.3540 2.4868 23 1 1.3534 0.6020 2.7131 24 6 2.1482 -1.2192 3.5156 25 7 2.5187 -2.4521 3.2420 26 14 2.0880 -0.6336 5.2885 27 1 0.7745 -0.9893 5.8829 28 1 3.1746 -1.2861 6.0624 29 1 2.2672 0.8400 5.3295 30 1 -0.3633 0.5206 0.8860 31 1 -0.3633 0.5070 -0.8939 32 1 -0.3633 -1.0277 0.0079 33 1 2.7133 1.1011 -2.0514 34 1 2.6774 -0.4209 -6.4586 35 1 4.0454 4.5201 -4.9037 36 1 2.4720 3.9842 -7.4201 37 1 2.3075 5.3211 -6.2387 38 1 4.1980 6.5073 -7.1535 39 1 3.4474 5.8265 -8.6327 40 1 6.0425 5.3003 -8.1314 41 1 4.9834 3.9697 -8.6914 42 1 6.0842 4.5097 -5.9364 43 1 5.6845 2.9497 -6.7090 44 1 4.1682 -0.8634 -0.6564 45 1 3.4922 -2.4074 -1.2757 46 1 3.6743 -2.0284 1.3962 47 1 2.1937 -2.7697 0.7152 48 1 2.7601 -3.0569 3.9610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088948334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:33 Heat of formation + Delta-G solvation = -25.443218 kcal Electronic energy + Delta-G solvation = -28494.842335 eV Core-core repulsion = 24550.429873 eV Total energy + Delta-G solvation = -3944.412462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.54567 -40.98287 -39.23114 -38.93341 -36.02984 -35.57979 -33.82180 -32.35500 -32.08946 -30.54171 -29.64647 -29.10285 -26.95278 -25.90920 -24.75940 -23.47043 -22.37083 -21.78007 -21.58940 -21.49642 -20.56064 -19.03920 -18.69315 -17.87777 -17.74487 -17.35645 -16.74462 -16.61334 -16.27914 -15.93919 -15.76964 -15.55728 -15.12914 -14.77338 -14.54821 -14.35481 -14.25872 -14.01339 -13.83959 -13.23772 -12.92128 -12.88298 -12.82326 -12.61743 -12.53509 -12.34357 -12.23997 -12.14248 -12.02041 -11.96616 -11.95083 -11.91884 -11.68176 -11.63896 -11.55867 -11.42719 -11.33203 -10.68802 -10.23059 -9.96438 -8.88293 -7.86113 -5.21463 0.02446 0.89242 1.47483 1.48585 1.50152 1.58257 1.95958 2.16542 2.51027 2.71991 3.33763 3.48361 3.58095 3.64487 3.68098 3.80145 3.82019 3.88415 4.06008 4.16759 4.45441 4.46506 4.47194 4.48012 4.53763 4.54980 4.58596 4.60142 4.73353 4.77868 4.80500 4.88392 4.95005 4.97471 5.01116 5.07944 5.08682 5.25455 5.29249 5.31622 5.33285 5.47116 5.50387 5.52685 5.57082 5.69385 6.20205 6.26120 6.55258 7.02793 7.07872 7.75644 8.42130 9.26031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002275 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.701010 B =12306.761019 C =12951.630040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.151 3.849 3 H 0.049 0.951 4 C 0.152 3.848 5 H 0.087 0.913 6 N -0.689 5.689 7 C 0.602 3.398 8 O -0.568 6.568 9 C -0.097 4.097 10 C 0.029 3.971 11 O -0.190 6.190 12 C 0.212 3.788 13 C 0.000 4.000 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.119 4.119 18 N -0.482 5.482 19 C -0.139 4.139 20 C 0.182 3.818 21 N -0.612 5.612 22 C -0.233 4.233 23 H 0.082 0.918 24 C -0.065 4.065 25 N -0.949 5.949 26 Si 0.977 3.023 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.267 1.267 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.414 0.586 34 H 0.257 0.743 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.000 1.000 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 16.648 -25.938 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.044 3.956 3 H 0.066 0.934 4 C 0.046 3.954 5 H 0.105 0.895 6 N -0.339 5.339 7 C 0.389 3.611 8 O -0.448 6.448 9 C -0.216 4.216 10 C -0.045 4.045 11 O -0.075 6.075 12 C 0.002 3.998 13 C -0.019 4.019 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.160 4.160 17 C -0.157 4.157 18 N -0.212 5.212 19 C -0.179 4.179 20 C 0.057 3.943 21 N -0.337 5.337 22 C -0.362 4.362 23 H 0.100 0.900 24 C -0.258 4.258 25 N -0.598 5.598 26 Si 0.805 3.195 27 H -0.215 1.215 28 H -0.222 1.222 29 H -0.192 1.192 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.251 0.749 34 H 0.273 0.727 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.104 16.102 -25.342 30.304 hybrid contribution -0.122 -0.626 1.015 1.199 sum 3.982 15.476 -24.326 29.106 Atomic orbital electron populations 1.22101 0.96517 1.00765 1.01020 1.21191 0.93528 0.95039 0.85874 0.93375 1.21805 0.96567 0.90698 0.86303 0.89455 1.45694 1.66743 1.16357 1.05095 1.16991 0.76718 0.85466 0.81955 1.90802 1.50738 1.20398 1.82845 1.21612 1.12421 0.92981 0.94602 1.25781 0.96648 0.90356 0.91715 1.84404 1.64289 1.19527 1.39305 1.26858 0.98184 0.94731 0.80014 1.20754 0.96651 0.81572 1.02942 1.22517 0.97418 0.98696 0.97064 1.22514 0.95054 0.98022 1.00007 1.22388 0.99049 0.98612 0.95987 1.22266 0.94509 1.01507 0.97438 1.70771 1.16777 1.06851 1.26779 1.23222 0.97519 1.00174 0.96980 1.21133 0.93932 0.88711 0.90544 1.44722 1.58795 1.29404 1.00826 1.19324 1.35145 1.00047 0.81640 0.89978 1.25655 1.02601 0.95617 1.01976 1.70152 1.52634 1.05473 1.31535 0.85098 0.76768 0.77891 0.79750 1.21512 1.22168 1.19201 0.93314 0.91476 0.94409 0.74915 0.72706 0.85893 0.91614 0.89848 0.89955 0.90217 0.89957 0.91635 0.89236 0.92377 0.91148 0.90888 0.94126 0.98210 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.15 71.98 0.66 -4.87 16 2 C 0.15 6.18 3.47 45.34 0.16 6.34 16 3 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 4 C 0.15 5.69 2.84 46.18 0.13 5.82 16 5 H 0.09 3.49 7.26 -2.38 -0.02 3.48 16 6 N -0.69 -22.02 5.18 -440.17 -2.28 -24.30 16 7 C 0.60 19.20 7.81 86.66 0.68 19.88 16 8 O -0.57 -20.97 16.53 -4.09 -0.07 -21.03 16 9 C -0.10 -2.56 6.99 40.41 0.28 -2.28 16 10 C 0.03 0.59 11.94 67.32 0.80 1.39 16 11 O -0.19 -3.54 10.58 0.36 0.00 -3.54 16 12 C 0.21 4.09 6.50 88.39 0.57 4.67 16 13 C 0.00 0.00 3.44 -10.82 -0.04 -0.04 16 14 C -0.12 -1.14 6.36 31.70 0.20 -0.94 16 15 C -0.12 -0.74 6.91 31.91 0.22 -0.52 16 16 C -0.12 -0.88 6.83 31.67 0.22 -0.67 16 17 C -0.12 -1.19 6.45 31.31 0.20 -0.99 16 18 N -0.48 -11.94 11.06 -293.02 -3.24 -15.18 16 19 C -0.14 -5.64 6.78 31.99 0.22 -5.42 16 20 C 0.18 9.27 5.42 86.86 0.47 9.74 16 21 N -0.61 -31.36 3.13 -668.25 -2.09 -33.45 16 22 C -0.23 -12.91 9.83 84.03 0.83 -12.08 16 23 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 24 C -0.07 -3.72 5.40 84.86 0.46 -3.26 16 25 N -0.95 -57.56 10.69 21.65 0.23 -57.33 16 26 Si 0.98 45.85 29.56 68.60 2.03 47.88 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 30 H 0.05 1.91 8.02 -2.39 -0.02 1.89 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 12.16 8.10 -92.71 -0.75 11.41 16 34 H 0.26 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 0.74 7.72 -2.39 -0.02 0.73 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.06 0.73 7.67 -2.39 -0.02 0.71 16 44 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.04 2.29 6.94 -2.39 -0.02 2.27 16 47 H 0.00 -0.01 8.07 -2.39 -0.02 -0.03 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -70.51 389.44 0.86 -69.65 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.21 Total: 20.52 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.06 Total: 16.78 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -7.38 Total: -130.26 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.51 0.86 -69.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088948334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.210 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds