Wall clock time and date at job start Tue Mar 31 2020 17:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47332 * 2 1 4 4 O 1.42896 * 109.47000 * 120.00039 * 2 1 3 5 5 C 1.35652 * 116.99975 * 155.37941 * 4 2 1 6 6 C 1.39340 * 120.53790 * 1.46679 * 5 4 2 7 7 C 1.38308 * 118.43411 * 180.02562 * 6 5 4 8 8 C 1.38763 * 119.44796 * 359.97438 * 7 6 5 9 9 N 1.31369 * 121.06648 * 359.74291 * 8 7 6 10 10 C 1.32860 * 121.69694 * 0.52750 * 9 8 7 11 11 C 1.47831 * 119.78654 * 179.75107 * 10 9 8 12 12 O 1.21549 * 119.99833 * 179.72382 * 11 10 9 13 13 N 1.34783 * 119.99605 * 359.72635 * 11 10 9 14 14 C 1.46498 * 119.99533 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.64321 * 323.31371 * 14 13 11 16 16 C 1.55154 * 110.71745 * 86.45621 * 14 13 11 17 17 C 1.54913 * 101.58197 * 154.03871 * 16 14 13 18 18 N 1.47419 * 104.83192 * 322.99292 * 17 16 14 19 19 C 1.36940 * 125.64713 * 203.86750 * 18 17 16 20 20 H 1.07997 * 120.00167 * 150.15355 * 19 18 17 21 21 C 1.38813 * 119.99869 * 330.14025 * 19 18 17 22 22 N 1.31625 * 119.99843 * 159.38607 * 21 19 18 23 23 Si 1.86795 * 120.00119 * 339.39615 * 21 19 18 24 24 H 1.48508 * 109.47500 * 84.45520 * 23 21 19 25 25 H 1.48503 * 109.47413 * 204.45649 * 23 21 19 26 26 H 1.48497 * 109.47124 * 324.45441 * 23 21 19 27 27 C 1.47017 * 108.70759 * 24.12350 * 18 17 16 28 28 H 1.08996 * 109.88790 * 239.53060 * 27 18 17 29 29 C 1.53003 * 109.88437 * 118.35788 * 27 18 17 30 30 H 1.08993 * 109.46990 * 300.00450 * 1 2 3 31 31 H 1.09009 * 109.46646 * 59.99675 * 1 2 3 32 32 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46958 * 240.00322 * 2 1 3 34 34 H 1.09002 * 109.47089 * 300.00308 * 3 2 1 35 35 H 1.08999 * 109.46781 * 59.99750 * 3 2 1 36 36 H 1.09001 * 109.47166 * 179.97438 * 3 2 1 37 37 H 1.07997 * 120.78677 * 359.97438 * 6 5 4 38 38 H 1.08001 * 120.27153 * 179.97438 * 7 6 5 39 39 H 1.08003 * 119.46246 * 180.02562 * 8 7 6 40 40 H 0.96995 * 120.00200 * 359.97438 * 13 11 10 41 41 H 1.08996 * 111.00787 * 35.96699 * 16 14 13 42 42 H 1.09004 * 111.03925 * 272.12777 * 16 14 13 43 43 H 1.09001 * 110.36918 * 204.14839 * 17 16 14 44 44 H 1.09006 * 110.36357 * 81.82737 * 17 16 14 45 45 H 0.97003 * 119.99428 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.46553 * 61.45841 * 29 27 18 47 47 H 1.09000 * 109.47474 * 181.45734 * 29 27 18 48 48 H 1.09000 * 109.47056 * 301.45926 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2475 -1.2169 1.1006 6 6 4.0180 -1.0842 -0.0528 7 6 5.2772 -1.6558 -0.0730 8 6 5.7345 -2.3386 1.0451 9 7 4.9927 -2.4464 2.1240 10 6 3.7750 -1.9191 2.1894 11 6 2.9745 -2.0705 3.4230 12 8 1.8620 -1.5854 3.4889 13 7 3.4784 -2.7466 4.4745 14 6 2.6853 -2.8963 5.6971 15 1 2.1070 -1.9933 5.8930 16 6 1.7545 -4.1338 5.5995 17 6 1.5651 -4.4990 7.0930 18 7 2.8736 -4.2295 7.7163 19 6 3.3426 -4.8038 8.8676 20 1 4.4040 -4.9483 9.0055 21 6 2.4538 -5.1999 9.8576 22 7 2.8214 -6.0911 10.7538 23 14 0.7362 -4.4682 9.9179 24 1 -0.1552 -5.2212 8.9993 25 1 0.2085 -4.5573 11.3032 26 1 0.7896 -3.0445 9.4993 27 6 3.5892 -3.2377 6.9005 28 1 4.5317 -3.6572 6.5488 29 6 3.8534 -1.9773 7.7268 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 3.6404 -0.5484 -0.9111 38 1 5.8994 -1.5714 -0.9518 39 1 6.7180 -2.7847 1.0297 40 1 4.3660 -3.1341 4.4217 41 1 2.2393 -4.9456 5.0573 42 1 0.8025 -3.8720 5.1376 43 1 1.3056 -5.5527 7.1960 44 1 0.7947 -3.8721 7.5421 45 1 2.2001 -6.3681 11.4453 46 1 4.4812 -2.2284 8.5817 47 1 4.3608 -1.2370 7.1083 48 1 2.9063 -1.5687 8.0791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089012972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:09 Heat of formation + Delta-G solvation = -32.452726 kcal Electronic energy + Delta-G solvation = -29211.907415 eV Core-core repulsion = 25267.190998 eV Total energy + Delta-G solvation = -3944.716417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03664 -40.71121 -39.54400 -39.09028 -35.61419 -34.28581 -34.14609 -33.29656 -32.24198 -31.53596 -30.78390 -28.23410 -26.89820 -25.86420 -25.46277 -24.59062 -22.82391 -22.17336 -21.54567 -21.35032 -19.46696 -18.90858 -18.69953 -17.98371 -17.25913 -17.02218 -16.77281 -16.26336 -16.01658 -15.84121 -15.48812 -15.27456 -15.20314 -15.02703 -14.63633 -14.43432 -14.33352 -14.02396 -13.91286 -13.46715 -13.42076 -13.28900 -13.22509 -13.14889 -12.86309 -12.84348 -12.64633 -12.44888 -12.20491 -12.05602 -12.00855 -11.74900 -11.69513 -11.56370 -11.25293 -10.79247 -10.74813 -10.58205 -10.06472 -9.45818 -8.95453 -8.21076 -5.54812 -0.34373 0.24328 1.30565 1.37508 1.47745 1.76916 2.00528 2.10476 2.40695 2.84344 3.02541 3.16244 3.35305 3.57489 3.64681 3.74498 3.76878 3.78608 3.94725 4.05304 4.09898 4.14568 4.16305 4.28529 4.41099 4.49731 4.54530 4.66050 4.72580 4.75640 4.78943 4.79440 4.84145 4.88183 4.93072 4.98132 5.01550 5.09610 5.14522 5.21280 5.24361 5.35059 5.47399 5.55614 5.78181 6.12758 6.28993 6.47226 6.75593 6.84149 7.22344 7.50975 8.12450 8.99122 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002879 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.408980 B = 9723.750681 C =10651.820603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 C -0.175 4.175 4 O -0.298 6.298 5 C 0.130 3.870 6 C -0.176 4.176 7 C -0.085 4.085 8 C 0.052 3.948 9 N -0.440 5.440 10 C 0.003 3.997 11 C 0.568 3.432 12 O -0.554 6.554 13 N -0.693 5.693 14 C 0.150 3.850 15 H 0.085 0.915 16 C -0.127 4.127 17 C 0.114 3.886 18 N -0.615 5.615 19 C -0.227 4.227 20 H 0.059 0.941 21 C -0.021 4.021 22 N -0.950 5.950 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.304 1.304 26 H -0.272 1.272 27 C 0.150 3.850 28 H 0.056 0.944 29 C -0.147 4.147 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.177 0.823 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.415 0.585 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.264 0.736 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 14.456 -31.997 35.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.003 3.997 3 C -0.232 4.232 4 O -0.210 6.210 5 C 0.079 3.921 6 C -0.202 4.202 7 C -0.104 4.104 8 C -0.110 4.110 9 N -0.152 5.152 10 C -0.133 4.133 11 C 0.354 3.646 12 O -0.431 6.431 13 N -0.344 5.344 14 C 0.044 3.956 15 H 0.103 0.897 16 C -0.167 4.167 17 C -0.011 4.011 18 N -0.341 5.341 19 C -0.355 4.355 20 H 0.077 0.923 21 C -0.217 4.217 22 N -0.596 5.596 23 Si 0.764 3.236 24 H -0.198 1.198 25 H -0.232 1.232 26 H -0.198 1.198 27 C 0.044 3.956 28 H 0.073 0.927 29 C -0.206 4.206 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.194 0.806 38 H 0.206 0.794 39 H 0.213 0.787 40 H 0.253 0.747 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.605 14.260 -30.805 34.046 hybrid contribution -0.804 0.289 0.227 0.884 sum 1.801 14.549 -30.578 33.911 Atomic orbital electron populations 1.21869 0.91883 1.02932 1.03721 1.22940 0.96392 0.93444 0.86925 1.22359 1.01920 0.94996 1.03915 1.86467 1.27503 1.66784 1.40200 1.20227 0.86158 0.91444 0.94305 1.22159 0.96070 1.04366 0.97574 1.22732 0.94772 0.92459 1.00480 1.23393 1.00832 0.98629 0.88181 1.67550 1.02886 1.15773 1.28989 1.20358 0.93805 1.04899 0.94241 1.18073 0.85456 0.78002 0.83048 1.90791 1.20412 1.49559 1.82384 1.45682 1.20621 1.55142 1.12980 1.21774 0.92178 0.98128 0.83527 0.89698 1.23031 1.00288 0.97930 0.95409 1.21929 0.88298 0.98531 0.92316 1.44828 1.16993 1.46425 1.25855 1.18410 0.92926 1.31864 0.92334 0.92325 1.25803 1.01413 0.98694 0.95803 1.69930 1.37963 1.32136 1.19559 0.86008 0.82064 0.79985 0.75526 1.19802 1.23238 1.19791 1.21267 0.94623 0.89571 0.90128 0.92665 1.22085 1.00842 0.97411 1.00254 0.92914 0.87491 0.92615 0.88584 0.88079 0.92994 0.91825 0.80617 0.79405 0.78739 0.74734 0.90128 0.90164 0.93485 0.96474 0.92730 0.93415 0.91112 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.56 71.98 0.69 -1.37 16 2 C 0.06 0.85 2.85 30.60 0.09 0.94 16 3 C -0.17 -1.96 9.23 71.98 0.66 -1.30 16 4 O -0.30 -7.44 7.86 -68.68 -0.54 -7.98 16 5 C 0.13 2.93 6.61 22.93 0.15 3.08 16 6 C -0.18 -2.22 8.39 22.55 0.19 -2.03 16 7 C -0.08 -0.74 10.10 22.41 0.23 -0.52 16 8 C 0.05 0.71 11.17 84.89 0.95 1.66 16 9 N -0.44 -9.93 9.54 -184.63 -1.76 -11.69 16 10 C 0.00 0.09 6.76 41.93 0.28 0.37 16 11 C 0.57 18.94 7.80 86.78 0.68 19.61 16 12 O -0.55 -21.80 14.86 17.12 0.25 -21.55 16 13 N -0.69 -22.03 5.20 -439.79 -2.29 -24.32 16 14 C 0.15 5.44 2.76 46.18 0.13 5.56 16 15 H 0.08 3.29 7.40 -2.39 -0.02 3.27 16 16 C -0.13 -4.74 6.77 31.99 0.22 -4.52 16 17 C 0.11 5.15 4.84 86.86 0.42 5.57 16 18 N -0.61 -30.19 2.77 -668.25 -1.85 -32.05 16 19 C -0.23 -13.13 10.10 84.03 0.85 -12.28 16 20 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 21 C -0.02 -1.27 5.44 84.86 0.46 -0.81 16 22 N -0.95 -60.46 13.97 21.65 0.30 -60.15 16 23 Si 0.94 48.45 24.54 68.60 1.68 50.13 16 24 H -0.27 -13.44 6.92 99.48 0.69 -12.75 16 25 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 26 H -0.27 -13.90 7.00 99.48 0.70 -13.21 16 27 C 0.15 6.04 3.48 45.35 0.16 6.20 16 28 H 0.06 2.15 7.70 -2.39 -0.02 2.13 16 29 C -0.15 -5.64 9.14 71.98 0.66 -4.98 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.87 6.17 -2.39 -0.01 0.86 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.67 7.18 -2.39 -0.02 0.65 16 37 H 0.18 1.05 5.73 -2.91 -0.02 1.03 16 38 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 39 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.42 11.96 7.65 -92.71 -0.71 11.25 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 43 H 0.05 2.22 7.83 -2.39 -0.02 2.20 16 44 H 0.02 0.82 5.48 -2.38 -0.01 0.80 16 45 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.05 1.95 8.02 -2.39 -0.02 1.93 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -78.81 383.68 2.84 -75.97 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.23 Total: 16.45 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.81 Total: 15.20 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.59 Total: -128.21 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.29 Total: -29.53 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.68 Total: 50.13 kcal Total: -78.81 2.84 -75.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089012972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.515 kcal (2) G-P(sol) polarization free energy of solvation -78.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds