Wall clock time and date at job start Tue Mar 31 2020 17:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 O 1.42900 * 109.46928 * 240.00053 * 2 1 3 5 5 C 1.35726 * 116.99601 * 204.90532 * 4 2 1 6 6 C 1.39232 * 120.38179 * 354.50169 * 5 4 2 7 7 C 1.38321 * 118.44251 * 180.02562 * 6 5 4 8 8 C 1.39461 * 119.13694 * 359.97438 * 7 6 5 9 9 C 1.47929 * 119.66338 * 179.97438 * 8 7 6 10 10 O 1.21544 * 119.99509 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00306 * 179.97438 * 9 8 7 12 12 C 1.46490 * 119.99835 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.64489 * 325.70040 * 12 11 9 14 14 C 1.55155 * 110.72169 * 88.84425 * 12 11 9 15 15 C 1.54915 * 101.58444 * 153.86261 * 14 12 11 16 16 N 1.47418 * 104.82838 * 322.99230 * 15 14 12 17 17 C 1.36945 * 125.64736 * 204.15996 * 16 15 14 18 18 H 1.07996 * 120.00098 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99430 * 359.97438 * 17 16 15 20 20 N 1.31608 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99565 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47159 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46917 * 119.99797 * 21 19 17 24 24 H 1.48500 * 109.47061 * 240.00086 * 21 19 17 25 25 C 1.47321 * 108.74140 * 24.28241 * 16 15 14 26 26 H 1.08998 * 109.84843 * 239.39038 * 25 16 15 27 27 C 1.53003 * 110.06333 * 118.12775 * 25 16 15 28 28 N 1.32806 * 120.68433 * 0.02562 * 8 7 6 29 29 C 1.31384 * 121.69011 * 359.70181 * 28 8 7 30 30 H 1.09000 * 109.47032 * 60.00425 * 1 2 3 31 31 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00172 * 1 2 3 33 33 H 1.09000 * 109.47032 * 119.99575 * 2 1 3 34 34 H 1.08994 * 109.47454 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47062 * 299.99985 * 3 2 1 36 36 H 1.09001 * 109.47560 * 59.99486 * 3 2 1 37 37 H 1.08004 * 120.77641 * 359.97438 * 6 5 4 38 38 H 1.08006 * 120.43268 * 179.97438 * 7 6 5 39 39 H 0.96997 * 119.99365 * 0.02562 * 11 9 8 40 40 H 1.08999 * 111.00773 * 271.93886 * 14 12 11 41 41 H 1.09003 * 111.00640 * 35.78949 * 14 12 11 42 42 H 1.08999 * 110.35994 * 81.82975 * 15 14 12 43 43 H 1.08994 * 110.36679 * 204.15228 * 15 14 12 44 44 H 0.96998 * 119.99948 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47053 * 302.26693 * 27 25 16 46 46 H 1.08992 * 109.47002 * 62.26542 * 27 25 16 47 47 H 1.09000 * 109.47065 * 182.27039 * 27 25 16 48 48 H 1.07997 * 119.59175 * 180.31165 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2458 -1.2223 -1.0986 6 6 4.0436 -1.0222 0.0248 7 6 5.3003 -1.5995 0.0516 8 6 5.7227 -2.3579 -1.0399 9 6 7.0646 -2.9801 -1.0238 10 8 7.7931 -2.8287 -0.0626 11 7 7.4796 -3.7148 -2.0748 12 6 8.8083 -4.3314 -2.0584 13 1 9.5205 -3.6957 -1.5321 14 6 8.7511 -5.7418 -1.4145 15 6 9.9622 -6.4385 -2.0835 16 7 9.9752 -5.9273 -3.4662 17 6 10.5317 -6.5598 -4.5458 18 1 10.4883 -6.1004 -5.5222 19 6 11.1516 -7.7914 -4.3850 20 7 11.2049 -8.3510 -3.1950 21 14 11.9101 -8.6546 -5.8578 22 1 11.7168 -7.8227 -7.0727 23 1 13.3622 -8.8549 -5.6203 24 1 11.2536 -9.9725 -6.0513 25 6 9.2931 -4.6218 -3.4945 26 1 8.4404 -4.6644 -4.1721 27 6 10.2662 -3.5308 -3.9459 28 7 4.9329 -2.5264 -2.0943 29 6 3.7321 -1.9961 -2.1490 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6766 1.9565 0.8899 37 1 3.6898 -0.4294 0.8554 38 1 5.9461 -1.4648 0.9068 39 1 6.8983 -3.8352 -2.8419 40 1 8.8817 -5.6837 -0.3340 41 1 7.8200 -6.2492 -1.6671 42 1 10.8856 -6.1691 -1.5707 43 1 9.8271 -7.5201 -2.0802 44 1 11.6383 -9.2114 -3.0826 45 1 11.1243 -3.5087 -3.2741 46 1 10.6042 -3.7425 -4.9602 47 1 9.7633 -2.5639 -3.9247 48 1 3.1163 -2.1592 -3.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089085570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:13 Heat of formation + Delta-G solvation = -13.087881 kcal Electronic energy + Delta-G solvation = -28247.349000 eV Core-core repulsion = 24303.472306 eV Total energy + Delta-G solvation = -3943.876694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20215 -39.75747 -38.55956 -37.34714 -34.06412 -33.85000 -32.63042 -31.95102 -30.65783 -30.26627 -28.51541 -27.87508 -25.44554 -24.48115 -23.95478 -23.56090 -21.96231 -20.69615 -20.05317 -19.74678 -18.84402 -17.76971 -17.16551 -16.68783 -16.09865 -15.82103 -15.34012 -15.05119 -14.86628 -14.66596 -14.40597 -14.05681 -13.92008 -13.66600 -13.57968 -13.25042 -12.94550 -12.86392 -12.78833 -12.64041 -12.39575 -12.09423 -11.91252 -11.54742 -11.52255 -11.33669 -11.09280 -10.83406 -10.80897 -10.51161 -10.42845 -10.16784 -10.16443 -10.03466 -9.73952 -9.64793 -9.50717 -8.83570 -8.63376 -8.49874 -6.83389 -5.61888 -3.04343 0.50126 0.85870 2.54477 2.75186 3.30247 3.42065 3.47624 3.49961 3.73088 4.05317 4.11079 4.24576 4.29227 4.42791 4.50756 4.53557 4.77362 4.80973 4.97047 5.11851 5.13347 5.19113 5.32554 5.44849 5.46649 5.50023 5.56917 5.59930 5.63984 5.67736 5.69164 5.87179 5.98352 6.18585 6.30884 6.37295 6.40463 6.58454 6.66789 6.76417 6.78322 6.91458 7.15409 7.45293 7.56542 7.66740 7.84829 7.89179 8.37389 8.42188 9.24404 9.85040 10.49326 11.41571 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002068 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.792287 B =13534.005517 C =13803.802245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.182 4.182 4 O -0.300 6.300 5 C 0.102 3.898 6 C -0.179 4.179 7 C -0.068 4.068 8 C 0.042 3.958 9 C 0.571 3.429 10 O -0.541 6.541 11 N -0.694 5.694 12 C 0.133 3.867 13 H 0.093 0.907 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.154 3.846 26 H 0.039 0.961 27 C -0.155 4.155 28 N -0.417 5.417 29 C 0.076 3.924 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.408 0.592 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.109 0.891 44 H 0.251 0.749 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.413 18.532 7.692 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 C -0.240 4.240 4 O -0.212 6.212 5 C 0.053 3.947 6 C -0.205 4.205 7 C -0.089 4.089 8 C -0.096 4.096 9 C 0.356 3.644 10 O -0.418 6.418 11 N -0.343 5.343 12 C 0.029 3.971 13 H 0.111 0.889 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.321 5.321 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.046 3.954 26 H 0.056 0.944 27 C -0.214 4.214 28 N -0.128 5.128 29 C -0.087 4.087 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.032 0.968 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.558 17.926 7.467 28.279 hybrid contribution -0.101 0.184 -0.164 0.267 sum -20.659 18.110 7.303 28.427 Atomic orbital electron populations 1.21862 0.91954 1.03464 1.03328 1.22568 0.95846 0.92768 0.87103 1.22410 1.02275 0.95729 1.03564 1.86122 1.28376 1.67564 1.39129 1.20428 0.85484 0.93372 0.95410 1.21736 0.95342 1.04347 0.99044 1.21960 0.95121 0.93041 0.98796 1.21171 0.95744 1.00748 0.91911 1.17679 0.84731 0.78754 0.83249 1.90778 1.55111 1.61918 1.33982 1.45924 1.18260 1.50213 1.19900 1.22222 0.82582 0.94495 0.97845 0.88856 1.23407 1.01549 0.94906 0.99377 1.21948 0.91372 1.01128 0.82730 1.44572 1.66000 1.16105 1.05395 1.19083 1.28404 0.99777 0.87284 0.90383 1.24791 1.01231 0.97809 0.96942 1.69803 1.48885 1.18042 1.20241 0.86006 0.78635 0.79422 0.81474 1.20554 1.21829 1.21812 1.21054 0.94360 0.87694 0.92260 0.94376 1.22226 1.00065 0.97296 1.01838 1.67629 1.03399 1.17355 1.24460 1.22259 0.92554 0.95776 0.98080 0.91223 0.91422 0.90283 0.90630 0.91739 0.91122 0.90661 0.83624 0.83080 0.75574 0.91950 0.91909 0.96759 0.87294 0.93791 0.92916 0.92684 0.94276 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.56 37.16 0.36 -0.23 16 2 C 0.07 0.39 2.85 -26.73 -0.08 0.32 16 3 C -0.18 -0.83 9.18 37.16 0.34 -0.49 16 4 O -0.30 -2.43 9.80 -18.88 -0.19 -2.61 16 5 C 0.10 0.94 6.63 -38.84 -0.26 0.68 16 6 C -0.18 -1.56 8.32 -39.18 -0.33 -1.89 16 7 C -0.07 -0.76 9.62 -39.10 -0.38 -1.14 16 8 C 0.04 0.57 6.74 -83.02 -0.56 0.01 16 9 C 0.57 9.40 7.80 -12.29 -0.10 9.31 16 10 O -0.54 -10.26 16.00 5.33 0.09 -10.18 16 11 N -0.69 -11.46 5.18 -52.95 -0.27 -11.74 16 12 C 0.13 2.54 2.79 -66.10 -0.18 2.36 16 13 H 0.09 1.87 7.33 -51.93 -0.38 1.49 16 14 C -0.15 -3.14 6.77 -24.58 -0.17 -3.31 16 15 C 0.15 3.80 5.89 -2.53 -0.01 3.79 16 16 N -0.60 -15.11 3.14 -162.35 -0.51 -15.61 16 17 C -0.22 -5.98 9.91 -15.05 -0.15 -6.13 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.93 10.09 55.49 0.56 -26.37 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.21 3.49 -66.79 -0.23 2.98 16 26 H 0.04 0.78 7.70 -51.93 -0.40 0.39 16 27 C -0.15 -2.97 9.15 37.16 0.34 -2.63 16 28 N -0.42 -5.28 9.53 -9.68 -0.09 -5.37 16 29 C 0.08 0.78 11.14 -17.37 -0.19 0.58 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.36 6.35 -51.93 -0.33 0.03 16 34 H 0.06 0.34 6.92 -51.93 -0.36 -0.02 16 35 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.15 0.88 5.57 -52.48 -0.29 0.58 16 38 H 0.15 1.59 7.63 -52.48 -0.40 1.19 16 39 H 0.41 6.23 7.66 -40.82 -0.31 5.92 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 3.02 5.87 -51.93 -0.31 2.71 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -32.06 388.65 -8.67 -40.73 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.39 Total: 4.40 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.69 Total: 3.77 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.32 Total: -59.09 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.10 Total: -12.79 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.06 -8.67 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089085570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.644 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds