Wall clock time and date at job start Tue Mar 31 2020 17:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 O 1.42900 * 109.46928 * 240.00053 * 2 1 3 5 5 C 1.35726 * 116.99601 * 204.90532 * 4 2 1 6 6 C 1.39232 * 120.38179 * 354.50169 * 5 4 2 7 7 C 1.38321 * 118.44251 * 180.02562 * 6 5 4 8 8 C 1.39461 * 119.13694 * 359.97438 * 7 6 5 9 9 C 1.47929 * 119.66338 * 179.97438 * 8 7 6 10 10 O 1.21544 * 119.99509 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00306 * 179.97438 * 9 8 7 12 12 C 1.46490 * 119.99835 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.64489 * 325.70040 * 12 11 9 14 14 C 1.55155 * 110.72169 * 88.84425 * 12 11 9 15 15 C 1.54915 * 101.58444 * 153.86261 * 14 12 11 16 16 N 1.47418 * 104.82838 * 322.99230 * 15 14 12 17 17 C 1.36945 * 125.64736 * 204.15996 * 16 15 14 18 18 H 1.07996 * 120.00098 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99430 * 359.97438 * 17 16 15 20 20 N 1.31608 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99565 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47159 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46917 * 119.99797 * 21 19 17 24 24 H 1.48500 * 109.47061 * 240.00086 * 21 19 17 25 25 C 1.47321 * 108.74140 * 24.28241 * 16 15 14 26 26 H 1.08998 * 109.84843 * 239.39038 * 25 16 15 27 27 C 1.53003 * 110.06333 * 118.12775 * 25 16 15 28 28 N 1.32806 * 120.68433 * 0.02562 * 8 7 6 29 29 C 1.31384 * 121.69011 * 359.70181 * 28 8 7 30 30 H 1.09000 * 109.47032 * 60.00425 * 1 2 3 31 31 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00172 * 1 2 3 33 33 H 1.09000 * 109.47032 * 119.99575 * 2 1 3 34 34 H 1.08994 * 109.47454 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47062 * 299.99985 * 3 2 1 36 36 H 1.09001 * 109.47560 * 59.99486 * 3 2 1 37 37 H 1.08004 * 120.77641 * 359.97438 * 6 5 4 38 38 H 1.08006 * 120.43268 * 179.97438 * 7 6 5 39 39 H 0.96997 * 119.99365 * 0.02562 * 11 9 8 40 40 H 1.08999 * 111.00773 * 271.93886 * 14 12 11 41 41 H 1.09003 * 111.00640 * 35.78949 * 14 12 11 42 42 H 1.08999 * 110.35994 * 81.82975 * 15 14 12 43 43 H 1.08994 * 110.36679 * 204.15228 * 15 14 12 44 44 H 0.96998 * 119.99948 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47053 * 302.26693 * 27 25 16 46 46 H 1.08992 * 109.47002 * 62.26542 * 27 25 16 47 47 H 1.09000 * 109.47065 * 182.27039 * 27 25 16 48 48 H 1.07997 * 119.59175 * 180.31165 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2458 -1.2223 -1.0986 6 6 4.0436 -1.0222 0.0248 7 6 5.3003 -1.5995 0.0516 8 6 5.7227 -2.3579 -1.0399 9 6 7.0646 -2.9801 -1.0238 10 8 7.7931 -2.8287 -0.0626 11 7 7.4796 -3.7148 -2.0748 12 6 8.8083 -4.3314 -2.0584 13 1 9.5205 -3.6957 -1.5321 14 6 8.7511 -5.7418 -1.4145 15 6 9.9622 -6.4385 -2.0835 16 7 9.9752 -5.9273 -3.4662 17 6 10.5317 -6.5598 -4.5458 18 1 10.4883 -6.1004 -5.5222 19 6 11.1516 -7.7914 -4.3850 20 7 11.2049 -8.3510 -3.1950 21 14 11.9101 -8.6546 -5.8578 22 1 11.7168 -7.8227 -7.0727 23 1 13.3622 -8.8549 -5.6203 24 1 11.2536 -9.9725 -6.0513 25 6 9.2931 -4.6218 -3.4945 26 1 8.4404 -4.6644 -4.1721 27 6 10.2662 -3.5308 -3.9459 28 7 4.9329 -2.5264 -2.0943 29 6 3.7321 -1.9961 -2.1490 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6766 1.9565 0.8899 37 1 3.6898 -0.4294 0.8554 38 1 5.9461 -1.4648 0.9068 39 1 6.8983 -3.8352 -2.8419 40 1 8.8817 -5.6837 -0.3340 41 1 7.8200 -6.2492 -1.6671 42 1 10.8856 -6.1691 -1.5707 43 1 9.8271 -7.5201 -2.0802 44 1 11.6383 -9.2114 -3.0826 45 1 11.1243 -3.5087 -3.2741 46 1 10.6042 -3.7425 -4.9602 47 1 9.7633 -2.5639 -3.9247 48 1 3.1163 -2.1592 -3.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089085570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:12 Heat of formation + Delta-G solvation = -33.520438 kcal Electronic energy + Delta-G solvation = -28248.235022 eV Core-core repulsion = 24303.472306 eV Total energy + Delta-G solvation = -3944.762716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02150 -40.90605 -39.62188 -38.83361 -35.65978 -34.36218 -33.90927 -33.30516 -32.08684 -31.55618 -30.29205 -28.19852 -26.86391 -25.89547 -25.43175 -24.54988 -22.74450 -22.07651 -21.52769 -21.33334 -19.55071 -18.87844 -18.66420 -18.05661 -17.28165 -16.71262 -16.56363 -16.22166 -16.11151 -15.72359 -15.63917 -15.41843 -15.03815 -14.99398 -14.54522 -14.30810 -14.09135 -13.97112 -13.73511 -13.49564 -13.36554 -13.24158 -13.11655 -12.93633 -12.83431 -12.74745 -12.62639 -12.24866 -12.11915 -11.99434 -11.93798 -11.75296 -11.58046 -11.46129 -11.34446 -10.94704 -10.73944 -10.69603 -10.09215 -9.51645 -8.89373 -7.73777 -5.18711 -0.38969 0.09266 1.48948 1.49689 1.59892 1.65343 1.92567 2.07360 2.52601 2.76553 3.11916 3.36630 3.48249 3.56994 3.71224 3.78260 3.84423 3.91452 3.95357 3.97212 4.00394 4.14503 4.19775 4.50022 4.60961 4.62824 4.67374 4.69942 4.74261 4.79006 4.79975 4.85918 4.88620 4.90699 4.95451 5.04857 5.11788 5.22837 5.25976 5.29710 5.34422 5.50992 5.59070 5.60692 5.80604 6.14243 6.31180 6.40713 6.73791 7.12213 7.13463 7.79125 8.43206 9.28439 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002068 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.792287 B =13534.005517 C =13803.802245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 C -0.181 4.181 4 O -0.305 6.305 5 C 0.115 3.885 6 C -0.170 4.170 7 C -0.067 4.067 8 C 0.014 3.986 9 C 0.573 3.427 10 O -0.571 6.571 11 N -0.689 5.689 12 C 0.150 3.850 13 H 0.085 0.915 14 C -0.138 4.138 15 C 0.159 3.841 16 N -0.613 5.613 17 C -0.225 4.225 18 H 0.085 0.915 19 C -0.071 4.071 20 N -0.951 5.951 21 Si 0.980 3.020 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.150 3.850 26 H 0.049 0.951 27 C -0.145 4.145 28 N -0.432 5.432 29 C 0.069 3.931 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.416 0.584 40 H 0.069 0.931 41 H 0.066 0.934 42 H -0.012 1.012 43 H 0.079 0.921 44 H 0.246 0.754 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.853 20.663 7.500 32.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 C -0.238 4.238 4 O -0.217 6.217 5 C 0.065 3.935 6 C -0.195 4.195 7 C -0.088 4.088 8 C -0.123 4.123 9 C 0.359 3.641 10 O -0.451 6.451 11 N -0.339 5.339 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.178 4.178 15 C 0.033 3.967 16 N -0.339 5.339 17 C -0.354 4.354 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.220 1.220 25 C 0.043 3.957 26 H 0.066 0.934 27 C -0.205 4.205 28 N -0.143 5.143 29 C -0.095 4.095 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.194 0.806 38 H 0.172 0.828 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.035 20.101 7.261 31.423 hybrid contribution 0.470 -0.354 -0.069 0.593 sum -22.565 19.747 7.191 30.836 Atomic orbital electron populations 1.21897 0.90840 1.03492 1.04234 1.22901 0.96753 0.93102 0.86454 1.22413 1.01823 0.95209 1.04374 1.86145 1.27508 1.67302 1.40721 1.20456 0.85863 0.92196 0.94937 1.21981 0.94106 1.03717 0.99728 1.22033 0.96078 0.92626 0.98090 1.20776 0.94850 1.02981 0.93648 1.18108 0.85661 0.77979 0.82321 1.90752 1.56382 1.62988 1.34962 1.45751 1.17238 1.50324 1.20581 1.21822 0.83884 0.93475 0.96355 0.89683 1.23208 0.99591 0.95533 0.99462 1.21670 0.92026 0.99769 0.83231 1.44803 1.66156 1.17957 1.04970 1.19440 1.27816 0.99913 0.88181 0.89702 1.25632 1.02389 0.98799 0.99517 1.70045 1.49860 1.18096 1.22104 0.84981 0.77119 0.78118 0.78941 1.18927 1.22298 1.22010 1.21235 0.94633 0.86271 0.93520 0.93382 1.22102 0.99342 0.98067 1.00954 1.67531 1.04285 1.18114 1.24406 1.22607 0.92002 0.95664 0.99184 0.91477 0.91837 0.88260 0.89533 0.92380 0.91593 0.88676 0.80641 0.82846 0.74690 0.91276 0.91538 0.99356 0.90347 0.94445 0.94194 0.93205 0.91318 0.79317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.56 71.98 0.69 -0.06 16 2 C 0.06 0.48 2.85 30.60 0.09 0.57 16 3 C -0.18 -1.09 9.18 71.98 0.66 -0.43 16 4 O -0.30 -4.09 9.80 -90.48 -0.89 -4.98 16 5 C 0.12 1.83 6.63 22.75 0.15 1.99 16 6 C -0.17 -2.52 8.32 22.53 0.19 -2.33 16 7 C -0.07 -1.40 9.62 22.58 0.22 -1.18 16 8 C 0.01 0.36 6.74 41.86 0.28 0.64 16 9 C 0.57 18.63 7.80 86.81 0.68 19.30 16 10 O -0.57 -21.70 16.00 -3.85 -0.06 -21.76 16 11 N -0.69 -22.37 5.18 -439.71 -2.28 -24.65 16 12 C 0.15 5.73 2.79 46.18 0.13 5.86 16 13 H 0.09 3.43 7.33 -2.38 -0.02 3.41 16 14 C -0.14 -5.78 6.77 31.99 0.22 -5.56 16 15 C 0.16 8.17 5.89 86.86 0.51 8.68 16 16 N -0.61 -31.63 3.14 -667.55 -2.10 -33.72 16 17 C -0.22 -12.48 9.91 84.03 0.83 -11.64 16 18 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -4.07 5.49 84.87 0.47 -3.60 16 20 N -0.95 -57.42 10.09 21.65 0.22 -57.20 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.15 6.19 3.49 45.29 0.16 6.35 16 26 H 0.05 1.92 7.70 -2.39 -0.02 1.90 16 27 C -0.15 -5.45 9.15 71.98 0.66 -4.79 16 28 N -0.43 -10.37 9.53 -184.52 -1.76 -12.13 16 29 C 0.07 1.27 11.14 85.00 0.95 2.22 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 0.49 6.35 -2.39 -0.02 0.48 16 34 H 0.06 0.44 6.92 -2.39 -0.02 0.42 16 35 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.18 1.47 5.57 -2.91 -0.02 1.45 16 38 H 0.15 3.06 7.63 -2.91 -0.02 3.04 16 39 H 0.42 12.31 7.66 -92.71 -0.71 11.60 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.08 4.55 5.87 -2.39 -0.01 4.54 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -70.57 388.65 2.30 -68.27 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.26 Total: 22.05 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.87 Total: 16.01 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -5.91 Total: -127.71 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.95 Total: -26.74 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -70.57 2.30 -68.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089085570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.751 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds