Wall clock time and date at job start Tue Mar 31 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 C 1.50697 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.38356 * 120.35003 * 90.00347 * 4 3 2 6 6 N 1.31924 * 121.08450 * 180.02562 * 5 4 3 7 7 C 1.31690 * 121.87615 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.56932 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.56066 * 180.02562 * 8 7 6 10 10 O 1.21543 * 120.00090 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99651 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99713 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47222 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.64202 * 54.29794 * 13 12 11 15 15 C 1.54322 * 110.71941 * 291.15682 * 13 12 11 16 16 N 1.47018 * 107.27336 * 219.26699 * 15 13 12 17 17 C 1.36937 * 125.64797 * 178.97600 * 16 15 13 18 18 H 1.08000 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99548 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00732 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99599 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46881 * 90.00394 * 21 19 17 23 23 H 1.48499 * 109.47149 * 210.00031 * 21 19 17 24 24 H 1.48496 * 109.47418 * 330.00294 * 21 19 17 25 25 C 1.47426 * 108.70104 * 358.94171 * 16 15 13 26 26 C 1.54909 * 104.83381 * 24.12870 * 25 16 15 27 27 H 1.08997 * 111.00194 * 81.06198 * 26 25 16 28 28 C 1.53003 * 111.00221 * 204.91626 * 26 25 16 29 29 C 1.38360 * 120.35424 * 270.25900 * 4 3 2 30 30 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47134 * 300.00390 * 1 2 3 32 32 H 1.08998 * 109.46615 * 60.00084 * 1 2 3 33 33 H 1.09002 * 109.47333 * 60.00001 * 3 2 1 34 34 H 1.09001 * 109.46969 * 299.99609 * 3 2 1 35 35 H 1.08009 * 119.45553 * 0.02562 * 5 4 3 36 36 H 1.08007 * 119.71421 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99993 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47219 * 60.00124 * 12 11 9 39 39 H 1.09006 * 109.47416 * 299.99976 * 12 11 9 40 40 H 1.08998 * 109.88021 * 338.68403 * 15 13 12 41 41 H 1.09005 * 109.88017 * 99.69091 * 15 13 12 42 42 H 0.96996 * 120.00556 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36876 * 142.97187 * 25 16 15 44 44 H 1.09003 * 110.36123 * 265.28869 * 25 16 15 45 45 H 1.08998 * 109.46949 * 172.19393 * 28 26 25 46 46 H 1.08994 * 109.47021 * 292.19568 * 28 26 25 47 47 H 1.09005 * 109.47193 * 52.20022 * 28 26 25 48 48 H 1.08002 * 120.85177 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2099 1.1310 -1.1930 6 7 5.5249 1.0263 -1.2094 7 6 6.2319 0.9703 -0.0998 8 6 5.6040 1.0213 1.1451 9 6 6.3980 0.9590 2.3907 10 8 5.8404 1.0047 3.4697 11 7 7.7402 0.8526 2.3296 12 6 8.5270 0.7915 3.5638 13 6 10.0124 0.6741 3.2164 14 1 10.3158 1.4806 2.5488 15 6 10.3187 -0.7008 2.5860 16 7 11.6144 -1.1465 3.1191 17 6 12.2348 -2.3306 2.8222 18 1 11.7692 -3.0285 2.1420 19 6 13.4626 -2.6334 3.3946 20 7 14.0303 -1.7827 4.2231 21 14 14.3086 -4.2490 2.9902 22 1 15.1858 -4.0655 1.8060 23 1 15.1277 -4.6829 4.1504 24 1 13.2851 -5.2829 2.6925 25 6 12.1354 -0.1071 4.0255 26 6 10.8819 0.6687 4.5015 27 1 10.3792 0.1397 5.3111 28 6 11.2462 2.0936 4.9231 29 6 4.2086 1.1260 1.1948 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6688 1.1742 -2.1268 36 1 7.3073 0.8851 -0.1539 37 1 8.1852 0.8173 1.4684 38 1 8.2204 -0.0765 4.1476 39 1 8.3609 1.6980 4.1459 40 1 9.5409 -1.4145 2.8574 41 1 10.3738 -0.6073 1.5014 42 1 14.8880 -1.9945 4.6234 43 1 12.6437 -0.5642 4.8745 44 1 12.8128 0.5582 3.4901 45 1 10.3350 2.6584 5.1201 46 1 11.8556 2.0607 5.8262 47 1 11.8075 2.5770 4.1234 48 1 3.6894 1.1634 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092687395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:13 Heat of formation + Delta-G solvation = -23.435210 kcal Electronic energy + Delta-G solvation = -27901.621519 eV Core-core repulsion = 23957.296131 eV Total energy + Delta-G solvation = -3944.325388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.96777 -39.39009 -38.18481 -37.92024 -34.83870 -33.39718 -33.05671 -32.28985 -30.76378 -29.29861 -27.90458 -26.15055 -25.98581 -25.43560 -24.28650 -23.04342 -22.62105 -20.73859 -19.87824 -19.35294 -18.07679 -17.31531 -17.00095 -16.88476 -16.72935 -15.94237 -15.84290 -15.48504 -15.31771 -14.98454 -14.39550 -14.03111 -13.89016 -13.72192 -13.48668 -13.30370 -13.13579 -12.89220 -12.74000 -12.66309 -12.33876 -11.92752 -11.91363 -11.56482 -11.46001 -11.16189 -10.89028 -10.80261 -10.49798 -10.23948 -10.21734 -10.16948 -10.02144 -9.92533 -9.82771 -9.68239 -9.53458 -9.39775 -9.02984 -8.65723 -6.84113 -5.65875 -3.07668 0.30314 0.76715 2.64567 3.01838 3.30015 3.39961 3.45136 3.47009 3.68900 3.94967 4.29495 4.36257 4.48110 4.49250 4.53636 4.68655 4.79820 4.90176 4.94891 5.01711 5.15391 5.20225 5.22957 5.24370 5.28088 5.49001 5.56168 5.66110 5.73246 5.74448 5.85664 6.04000 6.08349 6.13622 6.18470 6.24237 6.36781 6.51128 6.58498 6.60249 6.61603 6.77294 6.92911 7.40017 7.47929 7.52561 7.62716 7.85716 8.08065 8.35794 9.21652 9.82436 10.47016 11.37850 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002187 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.574601 B =12801.567790 C =13677.004195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.155 4.155 5 C 0.141 3.859 6 N -0.485 5.485 7 C 0.142 3.858 8 C -0.185 4.185 9 C 0.561 3.439 10 O -0.537 6.537 11 N -0.717 5.717 12 C 0.133 3.867 13 C -0.111 4.111 14 H 0.077 0.923 15 C 0.140 3.860 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.159 3.841 26 C -0.111 4.111 27 H 0.072 0.928 28 C -0.135 4.135 29 C 0.004 3.996 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.252 0.748 43 H 0.107 0.893 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.109 10.527 -7.958 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.157 4.157 5 C -0.015 4.015 6 N -0.193 5.193 7 C -0.016 4.016 8 C -0.190 4.190 9 C 0.347 3.653 10 O -0.415 6.415 11 N -0.367 5.367 12 C 0.010 3.990 13 C -0.130 4.130 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.330 5.330 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.034 3.966 26 C -0.131 4.131 27 H 0.090 0.910 28 C -0.192 4.192 29 C -0.023 4.023 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.733 10.220 -7.920 26.152 hybrid contribution 0.077 -0.598 0.059 0.606 sum -22.656 9.622 -7.861 25.839 Atomic orbital electron populations 1.22790 0.80521 1.03156 1.00143 1.87992 1.19987 1.27023 1.95445 1.21225 0.88533 0.85510 1.01625 1.20569 0.95913 1.04972 0.94225 1.22916 0.89949 0.91108 0.97576 1.67779 1.07845 1.12832 1.30832 1.23113 1.00530 0.91174 0.86783 1.21064 0.95136 1.07713 0.95085 1.17964 0.82257 0.76899 0.88203 1.90778 1.70976 1.50159 1.29607 1.46002 1.06037 1.73808 1.10897 1.21514 0.89871 1.02260 0.85391 1.22512 0.92280 0.98968 0.99279 0.90419 1.21342 0.89728 0.92018 0.95509 1.44477 1.18364 1.18347 1.51807 1.19073 1.00544 0.93296 1.22172 0.90530 1.24789 0.97514 0.98664 0.99734 1.69787 1.17950 1.35193 1.34108 0.86074 0.79334 0.82822 0.77284 1.21643 1.21647 1.20707 1.21991 0.90363 0.88454 0.95755 1.22601 0.98817 0.96298 0.95361 0.90984 1.21655 1.00329 0.95989 1.01267 1.21630 0.92476 0.89228 0.98922 0.89329 0.93812 0.93844 0.91813 0.91698 0.82159 0.82004 0.76388 0.90956 0.91314 0.95785 0.96388 0.93724 0.87580 0.96884 0.93663 0.92631 0.92936 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.36 10.69 -35.23 -0.38 -3.74 16 3 C 0.11 0.74 6.08 36.00 0.22 0.95 16 4 C -0.15 -1.38 5.52 -104.54 -0.58 -1.96 16 5 C 0.14 1.27 10.85 -17.47 -0.19 1.08 16 6 N -0.49 -5.25 10.35 -12.91 -0.13 -5.38 16 7 C 0.14 1.48 10.71 -17.14 -0.18 1.30 16 8 C -0.18 -2.12 5.89 -104.82 -0.62 -2.74 16 9 C 0.56 7.66 7.78 -12.33 -0.10 7.57 16 10 O -0.54 -9.07 16.42 5.33 0.09 -8.98 16 11 N -0.72 -9.03 5.38 -61.25 -0.33 -9.36 16 12 C 0.13 1.90 5.01 -4.04 -0.02 1.88 16 13 C -0.11 -1.79 2.45 -88.79 -0.22 -2.01 16 14 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 15 C 0.14 2.79 6.64 -3.07 -0.02 2.77 16 16 N -0.60 -15.22 3.39 -170.07 -0.58 -15.80 16 17 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.16 3.76 5.36 -2.53 -0.01 3.74 16 26 C -0.11 -1.99 3.09 -88.47 -0.27 -2.27 16 27 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 28 C -0.13 -2.02 9.31 37.16 0.35 -1.68 16 29 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.16 1.35 6.42 -52.48 -0.34 1.02 16 37 H 0.40 4.22 6.47 -40.82 -0.26 3.95 16 38 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16 44 H 0.01 0.33 7.98 -51.93 -0.41 -0.08 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 48 H 0.15 1.53 7.74 -52.49 -0.41 1.12 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -33.72 393.82 -8.57 -42.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.57 Total: 1.24 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.15 Total: 2.86 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.48 Total: -56.67 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.29 Total: -12.72 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.72 -8.57 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092687395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.858 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds