Wall clock time and date at job start Tue Mar 31 2020 17:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 C 1.50697 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.38356 * 120.35003 * 90.00347 * 4 3 2 6 6 N 1.31924 * 121.08450 * 180.02562 * 5 4 3 7 7 C 1.31690 * 121.87615 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.56932 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.56066 * 180.02562 * 8 7 6 10 10 O 1.21543 * 120.00090 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99651 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99713 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47222 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.64202 * 54.29794 * 13 12 11 15 15 C 1.54322 * 110.71941 * 291.15682 * 13 12 11 16 16 N 1.47018 * 107.27336 * 219.26699 * 15 13 12 17 17 C 1.36937 * 125.64797 * 178.97600 * 16 15 13 18 18 H 1.08000 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99548 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00732 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99599 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46881 * 90.00394 * 21 19 17 23 23 H 1.48499 * 109.47149 * 210.00031 * 21 19 17 24 24 H 1.48496 * 109.47418 * 330.00294 * 21 19 17 25 25 C 1.47426 * 108.70104 * 358.94171 * 16 15 13 26 26 C 1.54909 * 104.83381 * 24.12870 * 25 16 15 27 27 H 1.08997 * 111.00194 * 81.06198 * 26 25 16 28 28 C 1.53003 * 111.00221 * 204.91626 * 26 25 16 29 29 C 1.38360 * 120.35424 * 270.25900 * 4 3 2 30 30 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47134 * 300.00390 * 1 2 3 32 32 H 1.08998 * 109.46615 * 60.00084 * 1 2 3 33 33 H 1.09002 * 109.47333 * 60.00001 * 3 2 1 34 34 H 1.09001 * 109.46969 * 299.99609 * 3 2 1 35 35 H 1.08009 * 119.45553 * 0.02562 * 5 4 3 36 36 H 1.08007 * 119.71421 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99993 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47219 * 60.00124 * 12 11 9 39 39 H 1.09006 * 109.47416 * 299.99976 * 12 11 9 40 40 H 1.08998 * 109.88021 * 338.68403 * 15 13 12 41 41 H 1.09005 * 109.88017 * 99.69091 * 15 13 12 42 42 H 0.96996 * 120.00556 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36876 * 142.97187 * 25 16 15 44 44 H 1.09003 * 110.36123 * 265.28869 * 25 16 15 45 45 H 1.08998 * 109.46949 * 172.19393 * 28 26 25 46 46 H 1.08994 * 109.47021 * 292.19568 * 28 26 25 47 47 H 1.09005 * 109.47193 * 52.20022 * 28 26 25 48 48 H 1.08002 * 120.85177 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2099 1.1310 -1.1930 6 7 5.5249 1.0263 -1.2094 7 6 6.2319 0.9703 -0.0998 8 6 5.6040 1.0213 1.1451 9 6 6.3980 0.9590 2.3907 10 8 5.8404 1.0047 3.4697 11 7 7.7402 0.8526 2.3296 12 6 8.5270 0.7915 3.5638 13 6 10.0124 0.6741 3.2164 14 1 10.3158 1.4806 2.5488 15 6 10.3187 -0.7008 2.5860 16 7 11.6144 -1.1465 3.1191 17 6 12.2348 -2.3306 2.8222 18 1 11.7692 -3.0285 2.1420 19 6 13.4626 -2.6334 3.3946 20 7 14.0303 -1.7827 4.2231 21 14 14.3086 -4.2490 2.9902 22 1 15.1858 -4.0655 1.8060 23 1 15.1277 -4.6829 4.1504 24 1 13.2851 -5.2829 2.6925 25 6 12.1354 -0.1071 4.0255 26 6 10.8819 0.6687 4.5015 27 1 10.3792 0.1397 5.3111 28 6 11.2462 2.0936 4.9231 29 6 4.2086 1.1260 1.1948 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6688 1.1742 -2.1268 36 1 7.3073 0.8851 -0.1539 37 1 8.1852 0.8173 1.4684 38 1 8.2204 -0.0765 4.1476 39 1 8.3609 1.6980 4.1459 40 1 9.5409 -1.4145 2.8574 41 1 10.3738 -0.6073 1.5014 42 1 14.8880 -1.9945 4.6234 43 1 12.6437 -0.5642 4.8745 44 1 12.8128 0.5582 3.4901 45 1 10.3350 2.6584 5.1201 46 1 11.8556 2.0607 5.8262 47 1 11.8075 2.5770 4.1234 48 1 3.6894 1.1634 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092687395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:12 Heat of formation + Delta-G solvation = -46.360952 kcal Electronic energy + Delta-G solvation = -27902.615654 eV Core-core repulsion = 23957.296131 eV Total energy + Delta-G solvation = -3945.319523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81047 -40.45375 -39.47404 -38.68192 -36.18253 -34.78053 -34.06412 -33.20953 -32.54936 -30.69274 -28.44318 -27.88914 -26.85927 -26.50062 -25.47281 -24.14720 -23.74450 -21.88840 -21.46647 -20.73871 -19.10007 -18.73041 -18.09388 -17.72755 -17.38610 -17.09831 -16.70055 -16.51467 -16.37717 -16.08484 -15.88408 -15.57776 -14.98565 -14.90870 -14.62799 -14.25846 -14.23283 -14.01562 -13.97763 -13.50618 -13.38385 -13.34120 -13.01952 -12.91813 -12.74950 -12.69271 -12.45697 -12.36764 -11.97315 -11.85513 -11.64667 -11.46855 -11.39475 -11.07880 -11.00891 -10.74014 -10.72292 -10.50434 -10.35188 -10.08239 -8.86837 -7.76715 -5.20824 -0.48589 0.00850 1.46200 1.47658 1.56358 1.70814 1.99483 2.49402 2.58727 3.05380 3.24093 3.32205 3.58246 3.63289 3.70553 3.73112 3.79830 3.84424 3.90344 3.97911 4.02553 4.29221 4.38680 4.48626 4.51562 4.54065 4.57097 4.62593 4.63390 4.76483 4.78881 4.85641 4.89771 4.90691 4.98302 5.05949 5.11164 5.15826 5.31071 5.39893 5.41105 5.43593 5.51377 5.73884 5.85806 6.17616 6.32931 6.39326 6.72911 7.04888 7.12220 7.80029 8.43306 9.24615 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002187 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.574601 B =12801.567790 C =13677.004195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.144 3.856 6 N -0.503 5.503 7 C 0.143 3.857 8 C -0.199 4.199 9 C 0.564 3.436 10 O -0.575 6.575 11 N -0.708 5.708 12 C 0.144 3.856 13 C -0.090 4.090 14 H 0.098 0.902 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.238 4.238 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.947 5.947 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.162 3.838 26 C -0.100 4.100 27 H 0.066 0.934 28 C -0.128 4.128 29 C -0.006 4.006 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.412 0.588 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.030 0.970 42 H 0.247 0.753 43 H 0.068 0.932 44 H -0.009 1.009 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.020 11.481 -9.571 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.211 5.211 7 C -0.015 4.015 8 C -0.204 4.204 9 C 0.351 3.649 10 O -0.455 6.455 11 N -0.360 5.360 12 C 0.021 3.979 13 C -0.109 4.109 14 H 0.116 0.884 15 C 0.010 3.990 16 N -0.354 5.354 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.037 3.963 26 C -0.121 4.121 27 H 0.084 0.916 28 C -0.185 4.185 29 C -0.032 4.032 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.196 0.804 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.009 0.991 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.666 11.184 -9.569 28.724 hybrid contribution 0.586 -0.911 0.503 1.194 sum -24.080 10.274 -9.066 27.706 Atomic orbital electron populations 1.22950 0.78962 1.03800 1.01359 1.87935 1.21799 1.28108 1.95723 1.21355 0.86951 0.85253 1.03428 1.20802 0.97248 1.03869 0.93482 1.23439 0.89567 0.89481 0.98792 1.67848 1.08826 1.13613 1.30834 1.23332 1.01357 0.90566 0.86290 1.20909 0.95361 1.09715 0.94415 1.18242 0.82317 0.75884 0.88441 1.90757 1.71644 1.52043 1.31094 1.45862 1.05831 1.73367 1.10905 1.21262 0.88529 1.02139 0.85990 1.22346 0.93168 0.97291 0.98112 0.88375 1.21527 0.87304 0.93899 0.96232 1.44800 1.19983 1.18098 1.52548 1.19431 1.00909 0.94465 1.21894 0.90358 1.25617 0.98435 1.01917 1.00099 1.70050 1.17892 1.36698 1.35054 0.85078 0.78218 0.79301 0.76731 1.21291 1.22000 1.19657 1.21767 0.92418 0.88159 0.93953 1.22435 0.96268 0.97416 0.95946 0.91569 1.21607 1.01753 0.93915 1.01236 1.21760 0.92389 0.89440 0.99631 0.89088 0.93049 0.92146 0.90917 0.89005 0.79288 0.80432 0.75034 0.92683 0.90045 0.96275 0.95202 0.94373 0.91400 0.99072 0.90707 0.92766 0.92643 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.50 10.69 -148.98 -1.59 -8.09 16 3 C 0.11 1.20 6.08 71.23 0.43 1.64 16 4 C -0.15 -2.44 5.52 -19.81 -0.11 -2.55 16 5 C 0.14 2.24 10.85 84.71 0.92 3.16 16 6 N -0.50 -9.89 10.35 -194.75 -2.01 -11.91 16 7 C 0.14 2.75 10.71 85.02 0.91 3.66 16 8 C -0.20 -4.37 5.89 -19.99 -0.12 -4.49 16 9 C 0.56 14.92 7.78 86.79 0.68 15.59 16 10 O -0.57 -19.25 16.42 -3.85 -0.06 -19.31 16 11 N -0.71 -16.74 5.38 -465.98 -2.51 -19.25 16 12 C 0.14 3.91 5.01 86.38 0.43 4.34 16 13 C -0.09 -2.76 2.45 -9.61 -0.02 -2.79 16 14 H 0.10 2.67 8.04 -2.39 -0.02 2.65 16 15 C 0.14 5.32 6.64 86.73 0.58 5.90 16 16 N -0.63 -32.15 3.39 -691.99 -2.35 -34.50 16 17 C -0.24 -13.41 10.27 84.03 0.86 -12.55 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 20 N -0.95 -56.61 10.09 21.65 0.22 -56.39 16 21 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.16 7.84 5.36 86.85 0.47 8.31 16 26 C -0.10 -3.56 3.09 -9.40 -0.03 -3.59 16 27 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 28 C -0.13 -3.59 9.31 71.98 0.67 -2.92 16 29 C -0.01 -0.12 9.39 22.73 0.21 0.10 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 34 H 0.09 0.53 8.09 -2.39 -0.02 0.51 16 35 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.18 2.63 6.42 -2.91 -0.02 2.61 16 37 H 0.41 7.82 6.47 -92.71 -0.60 7.22 16 38 H 0.05 1.72 8.00 -2.39 -0.02 1.70 16 39 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.02 0.78 7.73 -2.39 -0.02 0.76 16 41 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.07 3.82 5.87 -2.39 -0.01 3.81 16 44 H -0.01 -0.45 7.98 -2.39 -0.02 -0.47 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.54 8.07 -2.38 -0.02 1.52 16 48 H 0.14 2.96 7.74 -2.91 -0.02 2.94 16 Total: -1.00 -74.91 393.82 1.67 -73.24 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.36 Total: 16.24 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 7.59 Total: 11.86 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -6.65 Total: -122.04 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.66 Total: -27.41 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.91 1.67 -73.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092687395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.877 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds