Wall clock time and date at job start Tue Mar 31 2020 17:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.64706 * 2 1 4 4 C 1.54332 * 110.72048 * 236.66328 * 2 1 3 5 5 N 1.47021 * 107.27212 * 219.44557 * 4 2 1 6 6 C 1.36939 * 125.64807 * 178.91908 * 5 4 2 7 7 H 1.08003 * 119.99945 * 180.02562 * 6 5 4 8 8 C 1.38806 * 120.00007 * 0.02726 * 6 5 4 9 9 N 1.31626 * 120.00172 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00084 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47238 * 89.99786 * 10 8 6 12 12 H 1.48505 * 109.46983 * 209.99650 * 10 8 6 13 13 H 1.48500 * 109.47087 * 329.99769 * 10 8 6 14 14 C 1.47422 * 108.70268 * 358.94202 * 5 4 2 15 15 C 1.54908 * 104.83603 * 24.12576 * 14 5 4 16 16 H 1.09004 * 111.03353 * 81.07649 * 15 14 5 17 17 C 1.52995 * 111.00792 * 204.91645 * 15 14 5 18 18 N 1.46505 * 109.47436 * 287.19654 * 17 15 14 19 19 C 1.34769 * 120.00124 * 179.97438 * 18 17 15 20 20 O 1.21616 * 120.00285 * 359.97438 * 19 18 17 21 21 C 1.47422 * 119.99730 * 180.02562 * 19 18 17 22 22 C 1.36095 * 126.44508 * 180.02562 * 21 19 18 23 23 O 1.34259 * 106.94601 * 179.70169 * 22 21 19 24 24 C 1.34043 * 108.23007 * 0.26740 * 23 22 21 25 25 C 1.50697 * 125.38266 * 180.02562 * 24 23 22 26 26 C 1.53783 * 113.61355 * 37.47194 * 25 24 23 27 27 C 1.53779 * 87.08037 * 220.01948 * 26 25 24 28 28 C 1.53778 * 87.08451 * 25.43363 * 27 26 25 29 29 N 1.29937 * 109.24375 * 359.97438 * 24 23 22 30 30 H 1.09000 * 109.46968 * 296.85682 * 1 2 3 31 31 H 1.08998 * 109.46615 * 56.85727 * 1 2 3 32 32 H 1.09001 * 109.47197 * 176.85668 * 1 2 3 33 33 H 1.08998 * 109.87907 * 338.86285 * 4 2 1 34 34 H 1.09002 * 109.88133 * 99.87390 * 4 2 1 35 35 H 0.96997 * 120.00001 * 180.02562 * 9 8 6 36 36 H 1.09007 * 110.36838 * 265.28773 * 14 5 4 37 37 H 1.08999 * 110.37049 * 142.97197 * 14 5 4 38 38 H 1.09000 * 109.47361 * 167.19880 * 17 15 14 39 39 H 1.09002 * 109.47350 * 47.20010 * 17 15 14 40 40 H 0.97000 * 119.99579 * 0.02562 * 18 17 15 41 41 H 1.08002 * 126.53001 * 359.97371 * 22 21 19 42 42 H 1.09003 * 112.85251 * 168.78077 * 25 24 23 43 43 H 1.08998 * 113.61234 * 334.57353 * 26 25 24 44 44 H 1.08995 * 113.61308 * 105.46840 * 26 25 24 45 45 H 1.08998 * 113.61574 * 270.87716 * 27 26 25 46 46 H 1.09009 * 113.61228 * 139.98430 * 27 26 25 47 47 H 1.08997 * 113.61686 * 220.01835 * 28 27 26 48 48 H 1.08997 * 113.69134 * 89.12616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2445 -1.5521 -0.7364 6 6 4.0036 -2.4004 -1.4975 7 1 4.8456 -2.9138 -1.0571 8 6 3.6909 -2.6006 -2.8350 9 7 2.6644 -1.9754 -3.3716 10 14 4.7260 -3.7585 -3.8730 11 1 4.1643 -5.1308 -3.7931 12 1 4.7148 -3.3005 -5.2856 13 1 6.1215 -3.7644 -3.3655 14 6 3.4632 -1.2487 0.6896 15 6 2.0790 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4406 17 6 2.2278 0.1120 2.4394 18 7 2.6328 -0.6920 3.5952 19 6 2.8259 -0.1026 4.7917 20 8 2.6644 1.0968 4.9119 21 6 3.2340 -0.9117 5.9545 22 6 3.4635 -0.4557 7.2161 23 8 3.8051 -1.5195 7.9605 24 6 3.7918 -2.6042 7.1730 25 6 4.1157 -4.0078 7.6155 26 6 3.6073 -4.3412 9.0280 27 6 4.9326 -5.0910 9.2428 28 6 5.5391 -4.1640 8.1762 29 7 3.4543 -2.2543 5.9680 30 1 -0.3633 0.4643 0.9168 31 1 -0.3632 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0564 33 1 1.3129 -1.4785 -1.5751 34 1 2.3716 -0.1059 -1.9987 35 1 2.4457 -2.1156 -4.3062 36 1 4.1932 -0.4466 0.7992 37 1 3.7960 -2.1406 1.2205 38 1 1.2749 0.5973 2.6504 39 1 2.9854 0.8701 2.2407 40 1 2.7627 -1.6484 3.4990 41 1 3.3818 0.5664 7.5551 42 1 3.8561 -4.7577 6.8682 43 1 3.4916 -3.4666 9.6681 44 1 2.7320 -4.9907 9.0350 45 1 4.8958 -6.1379 8.9417 46 1 5.3579 -4.9501 10.2366 47 1 6.2234 -4.6704 7.4956 48 1 5.9522 -3.2406 8.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093117686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:33 Heat of formation + Delta-G solvation = 21.990379 kcal Electronic energy + Delta-G solvation = -28166.944939 eV Core-core repulsion = 24224.589352 eV Total energy + Delta-G solvation = -3942.355587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.71179 -39.61032 -39.04318 -37.94301 -35.11936 -34.62511 -32.88735 -31.03041 -30.69938 -29.29723 -26.58951 -26.17202 -26.05036 -25.34767 -23.99634 -22.58454 -21.90558 -20.92678 -20.03934 -19.77070 -19.16513 -18.20380 -17.06273 -16.95659 -16.62664 -16.17363 -15.88215 -15.61115 -15.21156 -14.78376 -14.26783 -14.04481 -13.73397 -13.54800 -13.27681 -13.20618 -13.05203 -12.90477 -12.87125 -12.48779 -11.84135 -11.68309 -11.52477 -11.47403 -11.36517 -11.18664 -11.05810 -11.00367 -10.95771 -10.79707 -10.75063 -10.36474 -10.07244 -9.97244 -9.87946 -9.70810 -9.53536 -9.27480 -8.91107 -8.57548 -6.79845 -5.68420 -3.01699 0.88450 1.76691 2.26405 3.09501 3.23421 3.41641 3.46572 3.48625 3.57017 4.01014 4.10263 4.32471 4.37864 4.51633 4.59201 4.70852 5.10973 5.13146 5.17516 5.21126 5.24131 5.31104 5.36192 5.39204 5.43069 5.45967 5.54828 5.55762 5.59035 5.77151 5.78988 5.88897 5.91207 6.05356 6.12414 6.21768 6.31446 6.44680 6.51238 6.62575 6.65828 6.78685 6.98252 7.20290 7.58951 7.60001 7.67154 7.86716 8.15741 8.29036 9.25195 9.85433 10.51848 11.43261 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002525 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.999496 B =11084.417127 C =12905.228664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.131 3.869 18 N -0.704 5.704 19 C 0.598 3.402 20 O -0.543 6.543 21 C -0.067 4.067 22 C 0.007 3.993 23 O -0.195 6.195 24 C 0.209 3.791 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.457 5.457 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.231 0.769 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -1.955 26.056 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.355 4.355 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.008 3.992 18 N -0.353 5.353 19 C 0.383 3.617 20 O -0.421 6.421 21 C -0.187 4.187 22 C -0.066 4.066 23 O -0.081 6.081 24 C 0.000 4.000 25 C -0.040 4.040 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 N -0.186 5.186 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.247 0.753 41 H 0.247 0.753 42 H 0.152 0.848 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.078 -1.585 25.351 25.401 hybrid contribution 0.609 -0.438 -0.264 0.795 sum 0.687 -2.023 25.087 25.178 Atomic orbital electron populations 1.21697 0.95310 1.01640 1.00539 1.22446 0.95162 0.99116 0.96292 0.91383 1.21215 0.89100 0.93066 0.90691 1.44464 1.32621 1.51399 1.04754 1.19058 1.07574 1.17535 0.91334 0.90509 1.24799 0.98485 1.00365 0.96897 1.69965 1.28826 1.45554 1.12638 0.86121 0.79528 0.80374 0.79766 1.21636 1.21705 1.20730 1.21586 0.92959 0.97133 0.86797 1.22677 0.99525 0.98076 0.92982 0.90066 1.21487 1.00278 0.93800 0.83609 1.45898 1.67899 1.12946 1.08603 1.16737 0.77330 0.85960 0.81649 1.90816 1.52922 1.13742 1.84631 1.21877 1.10323 0.90604 0.95923 1.25278 0.99283 0.92217 0.89869 1.84332 1.66511 1.16206 1.41067 1.26079 0.99532 0.90601 0.83829 1.21349 0.98813 0.85342 0.98490 1.23025 0.98547 1.01210 0.94288 1.22821 0.96051 0.99118 0.99673 1.23026 0.94670 1.00841 0.98361 1.70804 1.15969 1.11176 1.20652 0.93671 0.92752 0.92699 0.93308 0.94037 0.93798 0.96345 0.94506 0.91345 0.91089 0.75348 0.75296 0.84753 0.89248 0.90206 0.89357 0.90602 0.90033 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.16 37.16 0.34 -1.79 16 2 C -0.11 -2.04 3.02 -88.78 -0.27 -2.31 16 3 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 4 C 0.18 4.47 4.97 -3.06 -0.02 4.45 16 5 N -0.61 -15.64 3.39 -170.07 -0.58 -16.21 16 6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.14 2.95 6.65 -2.53 -0.02 2.93 16 15 C -0.11 -1.95 2.50 -88.47 -0.22 -2.17 16 16 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 17 C 0.13 2.00 5.13 -4.04 -0.02 1.98 16 18 N -0.70 -10.29 5.50 -61.38 -0.34 -10.62 16 19 C 0.60 9.01 7.81 -12.52 -0.10 8.91 16 20 O -0.54 -9.32 16.89 5.26 0.09 -9.23 16 21 C -0.07 -0.88 6.99 -83.02 -0.58 -1.46 16 22 C 0.01 0.08 11.95 29.96 0.36 0.43 16 23 O -0.20 -1.92 10.39 6.52 0.07 -1.85 16 24 C 0.21 2.14 7.33 -13.08 -0.10 2.05 16 25 C -0.02 -0.15 4.29 -90.96 -0.39 -0.54 16 26 C -0.13 -0.70 7.62 -25.92 -0.20 -0.89 16 27 C -0.14 -0.60 8.08 -25.92 -0.21 -0.81 16 28 C -0.13 -0.75 7.63 -25.92 -0.20 -0.94 16 29 N -0.46 -5.83 11.06 -7.66 -0.08 -5.92 16 30 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.05 1.30 7.00 -51.93 -0.36 0.94 16 34 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 40 H 0.41 5.80 8.20 -40.82 -0.33 5.46 16 41 H 0.23 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.50 7.81 -51.93 -0.41 0.09 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -33.35 393.34 -8.99 -42.34 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.76 Total: 2.06 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.86 Total: 2.94 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.43 Total: -59.48 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.16 Total: -11.09 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.35 -8.99 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093117686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.332 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds