Wall clock time and date at job start Tue Mar 31 2020 17:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.64706 * 2 1 4 4 C 1.54332 * 110.72048 * 236.66328 * 2 1 3 5 5 N 1.47021 * 107.27212 * 219.44557 * 4 2 1 6 6 C 1.36939 * 125.64807 * 178.91908 * 5 4 2 7 7 H 1.08003 * 119.99945 * 180.02562 * 6 5 4 8 8 C 1.38806 * 120.00007 * 0.02726 * 6 5 4 9 9 N 1.31626 * 120.00172 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00084 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47238 * 89.99786 * 10 8 6 12 12 H 1.48505 * 109.46983 * 209.99650 * 10 8 6 13 13 H 1.48500 * 109.47087 * 329.99769 * 10 8 6 14 14 C 1.47422 * 108.70268 * 358.94202 * 5 4 2 15 15 C 1.54908 * 104.83603 * 24.12576 * 14 5 4 16 16 H 1.09004 * 111.03353 * 81.07649 * 15 14 5 17 17 C 1.52995 * 111.00792 * 204.91645 * 15 14 5 18 18 N 1.46505 * 109.47436 * 287.19654 * 17 15 14 19 19 C 1.34769 * 120.00124 * 179.97438 * 18 17 15 20 20 O 1.21616 * 120.00285 * 359.97438 * 19 18 17 21 21 C 1.47422 * 119.99730 * 180.02562 * 19 18 17 22 22 C 1.36095 * 126.44508 * 180.02562 * 21 19 18 23 23 O 1.34259 * 106.94601 * 179.70169 * 22 21 19 24 24 C 1.34043 * 108.23007 * 0.26740 * 23 22 21 25 25 C 1.50697 * 125.38266 * 180.02562 * 24 23 22 26 26 C 1.53783 * 113.61355 * 37.47194 * 25 24 23 27 27 C 1.53779 * 87.08037 * 220.01948 * 26 25 24 28 28 C 1.53778 * 87.08451 * 25.43363 * 27 26 25 29 29 N 1.29937 * 109.24375 * 359.97438 * 24 23 22 30 30 H 1.09000 * 109.46968 * 296.85682 * 1 2 3 31 31 H 1.08998 * 109.46615 * 56.85727 * 1 2 3 32 32 H 1.09001 * 109.47197 * 176.85668 * 1 2 3 33 33 H 1.08998 * 109.87907 * 338.86285 * 4 2 1 34 34 H 1.09002 * 109.88133 * 99.87390 * 4 2 1 35 35 H 0.96997 * 120.00001 * 180.02562 * 9 8 6 36 36 H 1.09007 * 110.36838 * 265.28773 * 14 5 4 37 37 H 1.08999 * 110.37049 * 142.97197 * 14 5 4 38 38 H 1.09000 * 109.47361 * 167.19880 * 17 15 14 39 39 H 1.09002 * 109.47350 * 47.20010 * 17 15 14 40 40 H 0.97000 * 119.99579 * 0.02562 * 18 17 15 41 41 H 1.08002 * 126.53001 * 359.97371 * 22 21 19 42 42 H 1.09003 * 112.85251 * 168.78077 * 25 24 23 43 43 H 1.08998 * 113.61234 * 334.57353 * 26 25 24 44 44 H 1.08995 * 113.61308 * 105.46840 * 26 25 24 45 45 H 1.08998 * 113.61574 * 270.87716 * 27 26 25 46 46 H 1.09009 * 113.61228 * 139.98430 * 27 26 25 47 47 H 1.08997 * 113.61686 * 220.01835 * 28 27 26 48 48 H 1.08997 * 113.69134 * 89.12616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2445 -1.5521 -0.7364 6 6 4.0036 -2.4004 -1.4975 7 1 4.8456 -2.9138 -1.0571 8 6 3.6909 -2.6006 -2.8350 9 7 2.6644 -1.9754 -3.3716 10 14 4.7260 -3.7585 -3.8730 11 1 4.1643 -5.1308 -3.7931 12 1 4.7148 -3.3005 -5.2856 13 1 6.1215 -3.7644 -3.3655 14 6 3.4632 -1.2487 0.6896 15 6 2.0790 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4406 17 6 2.2278 0.1120 2.4394 18 7 2.6328 -0.6920 3.5952 19 6 2.8259 -0.1026 4.7917 20 8 2.6644 1.0968 4.9119 21 6 3.2340 -0.9117 5.9545 22 6 3.4635 -0.4557 7.2161 23 8 3.8051 -1.5195 7.9605 24 6 3.7918 -2.6042 7.1730 25 6 4.1157 -4.0078 7.6155 26 6 3.6073 -4.3412 9.0280 27 6 4.9326 -5.0910 9.2428 28 6 5.5391 -4.1640 8.1762 29 7 3.4543 -2.2543 5.9680 30 1 -0.3633 0.4643 0.9168 31 1 -0.3632 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0564 33 1 1.3129 -1.4785 -1.5751 34 1 2.3716 -0.1059 -1.9987 35 1 2.4457 -2.1156 -4.3062 36 1 4.1932 -0.4466 0.7992 37 1 3.7960 -2.1406 1.2205 38 1 1.2749 0.5973 2.6504 39 1 2.9854 0.8701 2.2407 40 1 2.7627 -1.6484 3.4990 41 1 3.3818 0.5664 7.5551 42 1 3.8561 -4.7577 6.8682 43 1 3.4916 -3.4666 9.6681 44 1 2.7320 -4.9907 9.0350 45 1 4.8958 -6.1379 8.9417 46 1 5.3579 -4.9501 10.2366 47 1 6.2234 -4.6704 7.4956 48 1 5.9522 -3.2406 8.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093117686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:32 Heat of formation + Delta-G solvation = -1.071746 kcal Electronic energy + Delta-G solvation = -28167.944988 eV Core-core repulsion = 24224.589352 eV Total energy + Delta-G solvation = -3943.355635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.53347 -40.81394 -39.62187 -39.44737 -36.16917 -35.91511 -34.65736 -32.55772 -31.88465 -30.77008 -27.92852 -27.20944 -26.81450 -26.57979 -25.31249 -24.03382 -22.67996 -21.97004 -21.62729 -20.95854 -20.22108 -19.17554 -18.75376 -17.89207 -17.69172 -17.34451 -16.75121 -16.59561 -16.37325 -16.14877 -15.79370 -15.62108 -15.01200 -14.74925 -14.63240 -14.38900 -14.14898 -13.75785 -13.52467 -13.45437 -13.33709 -13.31627 -13.12762 -12.86296 -12.70452 -12.43050 -12.39788 -11.99099 -11.94118 -11.91633 -11.85320 -11.62850 -11.52951 -11.41861 -11.40216 -11.37623 -11.14531 -10.70863 -10.26892 -9.95865 -8.90304 -7.85135 -5.20997 0.02452 0.87777 1.44848 1.47043 1.50397 1.55693 2.01758 2.17287 2.48852 2.77561 3.32319 3.54715 3.56244 3.59926 3.65214 3.77654 3.81830 3.91160 3.92341 3.93587 4.05280 4.34718 4.44709 4.47355 4.56854 4.58420 4.71645 4.73186 4.75474 4.79296 4.83060 4.87752 4.93998 4.97938 5.05871 5.07447 5.11708 5.12769 5.14559 5.29336 5.35135 5.43963 5.46112 5.51071 5.71353 5.81017 6.19813 6.25378 6.54556 7.01009 7.10264 7.77267 8.42044 9.25054 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002525 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.999496 B =11084.417127 C =12905.228664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.284 1.284 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.138 3.862 15 C -0.091 4.091 16 H 0.086 0.914 17 C 0.144 3.856 18 N -0.703 5.703 19 C 0.600 3.400 20 O -0.568 6.568 21 C -0.101 4.101 22 C 0.029 3.971 23 O -0.190 6.190 24 C 0.214 3.786 25 C -0.031 4.031 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.131 4.131 29 N -0.486 5.486 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.017 0.983 34 H 0.002 0.998 35 H 0.247 0.753 36 H 0.018 0.982 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.413 0.587 41 H 0.259 0.741 42 H 0.138 0.862 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -2.511 28.586 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.096 0.904 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.211 1.211 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.013 3.987 15 C -0.111 4.111 16 H 0.104 0.896 17 C 0.020 3.980 18 N -0.352 5.352 19 C 0.387 3.613 20 O -0.448 6.448 21 C -0.220 4.220 22 C -0.045 4.045 23 O -0.076 6.076 24 C 0.004 3.996 25 C -0.050 4.050 26 C -0.166 4.166 27 C -0.166 4.166 28 C -0.169 4.169 29 N -0.215 5.215 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.249 0.751 41 H 0.275 0.725 42 H 0.156 0.844 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.306 -2.152 27.913 27.998 hybrid contribution 0.595 -0.276 -0.992 1.190 sum 0.902 -2.429 26.921 27.045 Atomic orbital electron populations 1.21645 0.92871 1.01651 1.02323 1.22326 0.97078 0.98647 0.93919 0.90368 1.20988 0.88026 0.91968 0.92307 1.44794 1.32763 1.51195 1.06758 1.19450 1.07950 1.17788 0.92048 0.90174 1.25666 0.99900 1.02261 0.98163 1.70193 1.30350 1.46950 1.12453 0.85069 0.78429 0.78226 0.77557 1.21077 1.22067 1.19476 1.21736 0.95137 0.97282 0.84554 1.22465 0.96998 0.98313 0.93284 0.89612 1.21288 1.00870 0.93003 0.82831 1.45841 1.67936 1.12972 1.08494 1.16937 0.76611 0.85799 0.82002 1.90793 1.54205 1.14748 1.85095 1.21730 1.13008 0.91023 0.96256 1.25809 0.96645 0.93170 0.88907 1.84376 1.66259 1.16139 1.40801 1.26739 0.98018 0.91577 0.83257 1.21675 1.00133 0.83604 0.99553 1.23028 0.99450 1.01391 0.92733 1.22804 0.94910 0.99247 0.99640 1.23046 0.93884 1.01146 0.98834 1.70764 1.17466 1.11238 1.22057 0.90494 0.92499 0.93441 0.96522 0.98014 0.94406 0.96433 0.94061 0.89901 0.91675 0.75085 0.72515 0.84438 0.89457 0.89381 0.88308 0.89672 0.89853 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.16 71.98 0.66 -3.19 16 2 C -0.10 -3.64 3.02 -9.60 -0.03 -3.67 16 3 H 0.08 2.71 8.04 -2.39 -0.02 2.69 16 4 C 0.19 9.65 4.97 86.73 0.43 10.08 16 5 N -0.63 -33.19 3.39 -691.98 -2.35 -35.54 16 6 C -0.24 -14.00 10.28 84.03 0.86 -13.13 16 7 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 9 N -0.95 -58.22 10.31 21.65 0.22 -58.00 16 10 Si 0.98 46.58 29.55 68.60 2.03 48.60 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 C 0.14 5.75 6.65 86.86 0.58 6.33 16 15 C -0.09 -3.05 2.50 -9.40 -0.02 -3.07 16 16 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 17 C 0.14 4.14 5.13 86.38 0.44 4.59 16 18 N -0.70 -19.78 5.50 -466.37 -2.56 -22.35 16 19 C 0.60 17.45 7.81 86.66 0.68 18.12 16 20 O -0.57 -18.83 16.89 -4.08 -0.07 -18.89 16 21 C -0.10 -2.54 6.99 40.41 0.28 -2.26 16 22 C 0.03 0.54 11.95 67.32 0.80 1.35 16 23 O -0.19 -3.40 10.39 0.43 0.00 -3.39 16 24 C 0.21 4.12 7.33 88.39 0.65 4.77 16 25 C -0.03 -0.38 4.29 -11.01 -0.05 -0.43 16 26 C -0.13 -1.08 7.62 31.12 0.24 -0.84 16 27 C -0.13 -0.79 8.08 31.12 0.25 -0.54 16 28 C -0.13 -1.27 7.63 31.12 0.24 -1.03 16 29 N -0.49 -12.02 11.06 -293.04 -3.24 -15.26 16 30 H 0.08 1.86 8.10 -2.39 -0.02 1.85 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.02 0.93 7.00 -2.39 -0.02 0.91 16 34 H 0.00 0.09 7.51 -2.39 -0.02 0.07 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.02 0.75 7.91 -2.38 -0.02 0.73 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 39 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 40 H 0.41 11.33 8.20 -92.71 -0.76 10.57 16 41 H 0.26 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 0.79 7.81 -2.39 -0.02 0.77 16 44 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.08 0.40 8.14 -2.38 -0.02 0.39 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 Total: -1.00 -73.90 393.34 0.71 -73.19 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.20 Total: 18.00 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.48 Total: 13.63 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -7.93 Total: -131.13 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.90 0.71 -73.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093117686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.116 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds