Wall clock time and date at job start Tue Mar 31 2020 17:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.51498 * 2 1 4 4 C 1.53304 * 109.50997 * 120.10213 * 2 1 3 5 5 N 1.47154 * 108.40200 * 172.25757 * 4 2 1 6 6 C 1.34776 * 120.98673 * 129.40188 * 5 4 2 7 7 O 1.21695 * 120.00086 * 1.02021 * 6 5 4 8 8 C 1.46680 * 120.00256 * 181.01989 * 6 5 4 9 9 C 1.37875 * 126.23455 * 155.30412 * 8 6 5 10 10 C 1.39831 * 107.08491 * 179.97438 * 9 8 6 11 11 C 1.35450 * 107.86545 * 359.97438 * 10 9 8 12 12 N 1.35530 * 108.87298 * 359.77207 * 11 10 9 13 13 H 0.96999 * 125.68446 * 180.26413 * 12 11 10 14 14 C 1.47165 * 118.01832 * 309.46427 * 5 4 2 15 15 C 1.53259 * 108.43498 * 50.41457 * 14 5 4 16 16 C 1.52989 * 109.39576 * 67.84477 * 15 14 5 17 17 C 1.53194 * 109.34160 * 181.13306 * 16 15 14 18 18 N 1.46926 * 108.77779 * 305.42335 * 17 16 15 19 19 C 1.36939 * 120.64545 * 233.64546 * 18 17 16 20 20 H 1.07996 * 119.99538 * 26.57907 * 19 18 17 21 21 C 1.38807 * 120.00257 * 206.57727 * 19 18 17 22 22 N 1.31623 * 119.99993 * 16.94952 * 21 19 18 23 23 Si 1.86802 * 120.00185 * 196.94458 * 21 19 18 24 24 H 1.48502 * 109.46959 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47090 * 119.99933 * 23 21 19 26 26 H 1.48493 * 109.47376 * 240.00245 * 23 21 19 27 27 C 1.46930 * 118.71691 * 53.67228 * 18 17 16 28 28 C 1.53002 * 109.36077 * 187.92935 * 15 14 5 29 29 O 1.42894 * 109.32488 * 307.87138 * 15 14 5 30 30 H 1.08992 * 109.47027 * 299.90270 * 1 2 3 31 31 H 1.08998 * 109.46818 * 59.89859 * 1 2 3 32 32 H 1.09002 * 109.47503 * 179.89775 * 1 2 3 33 33 H 1.09003 * 109.68151 * 291.99114 * 4 2 1 34 34 H 1.08994 * 109.68557 * 52.51692 * 4 2 1 35 35 H 1.07995 * 126.45795 * 0.02562 * 9 8 6 36 36 H 1.07998 * 126.06774 * 179.97438 * 10 9 8 37 37 H 1.08004 * 125.56270 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.64579 * 290.68846 * 14 5 4 39 39 H 1.09002 * 109.71132 * 170.17838 * 14 5 4 40 40 H 1.08994 * 109.49260 * 301.09589 * 16 15 14 41 41 H 1.09005 * 109.49185 * 61.17424 * 16 15 14 42 42 H 1.09007 * 109.58121 * 185.64051 * 17 16 15 43 43 H 1.08997 * 109.58589 * 65.22071 * 17 16 15 44 44 H 0.96995 * 119.99960 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.58800 * 186.53881 * 27 18 17 46 46 H 1.09003 * 109.70345 * 66.18304 * 27 18 17 47 47 H 1.08996 * 109.49077 * 298.80531 * 28 15 14 48 48 H 1.09002 * 109.48991 * 58.85713 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2501 5 7 3.5012 -0.8753 1.1348 6 6 4.3189 -0.5013 2.1388 7 8 3.8518 -0.0482 3.1672 8 6 5.7717 -0.6403 1.9921 9 6 6.7318 0.0900 2.6597 10 6 7.9771 -0.3686 2.2190 11 6 7.7608 -1.3497 1.3105 12 7 6.4249 -1.5281 1.1676 13 1 5.9997 -2.1727 0.5805 14 6 4.0412 -1.4452 -0.1099 15 6 3.4306 -0.6883 -1.2944 16 6 3.9555 0.7487 -1.3041 17 6 3.3227 1.5122 -2.4717 18 7 3.5734 0.7690 -3.7141 19 6 4.1560 1.3841 -4.7900 20 1 4.8086 2.2312 -4.6394 21 6 3.9077 0.9187 -6.0739 22 7 2.8811 0.1264 -6.2997 23 14 5.0302 1.4170 -7.4814 24 1 6.1031 2.3062 -6.9679 25 1 5.6393 0.2033 -8.0823 26 1 4.2412 2.1373 -8.5128 27 6 3.1864 -0.6469 -3.7801 28 6 3.8208 -1.3870 -2.5984 29 8 2.0075 -0.6769 -1.1653 30 1 -0.3633 0.5123 0.8908 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3634 -1.0277 -0.0018 33 1 1.8023 -0.1393 2.1378 34 1 1.5760 -1.7074 1.3215 35 1 6.5554 0.8689 3.3867 36 1 8.9404 -0.0052 2.5451 37 1 8.5278 -1.9021 0.7878 38 1 3.7779 -2.5010 -0.1740 39 1 5.1256 -1.3359 -0.1242 40 1 3.6944 1.2376 -0.3656 41 1 5.0393 0.7392 -1.4205 42 1 3.7679 2.5046 -2.5434 43 1 2.2485 1.6022 -2.3101 44 1 2.7074 -0.1984 -7.1970 45 1 3.5415 -1.0796 -4.7154 46 1 2.1012 -0.7342 -3.7259 47 1 4.9056 -1.3795 -2.7045 48 1 3.4642 -2.4169 -2.5800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098565685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:56 Heat of formation + Delta-G solvation = 19.152838 kcal Electronic energy + Delta-G solvation = -30949.124266 eV Core-core repulsion = 27006.645634 eV Total energy + Delta-G solvation = -3942.478632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73505 -40.27824 -38.59408 -36.34535 -34.92937 -33.58342 -31.75131 -31.25626 -30.31342 -29.73752 -29.47511 -27.30888 -26.35256 -24.29654 -22.75515 -22.34016 -21.85388 -20.94863 -20.40935 -20.09725 -19.04825 -17.83625 -17.00113 -16.73113 -15.99859 -15.81778 -15.44307 -15.02288 -14.71532 -14.26439 -14.17217 -14.09428 -13.76296 -13.54954 -13.41750 -13.35768 -13.06010 -12.76611 -12.64983 -12.42893 -12.30695 -11.96528 -11.85901 -11.63332 -11.53587 -11.40496 -11.06085 -10.85428 -10.68766 -10.42092 -10.35051 -10.24548 -9.95019 -9.88495 -9.61528 -9.40713 -9.12090 -8.59515 -8.48105 -8.29777 -6.69340 -5.79866 -3.21330 1.38535 2.59052 2.67594 2.92302 3.28901 3.34771 3.43230 3.45183 3.81140 4.36022 4.47697 4.62907 4.76284 4.89651 4.98299 5.01225 5.11565 5.17889 5.26030 5.31364 5.35313 5.38863 5.48774 5.51483 5.55427 5.67730 5.71617 5.92860 5.93271 5.98310 6.01872 6.11822 6.19908 6.25418 6.29237 6.42941 6.44215 6.56819 6.59343 6.70284 6.77292 6.95386 7.13642 7.22314 7.36100 7.53175 7.70699 7.78050 7.98051 8.42772 9.20289 9.83655 10.40501 11.28292 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.004214 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.401811 B = 6642.718368 C = 8147.208069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.086 3.914 5 N -0.608 5.608 6 C 0.592 3.408 7 O -0.534 6.534 8 C -0.051 4.051 9 C -0.110 4.110 10 C -0.210 4.210 11 C 0.018 3.982 12 N -0.543 5.543 13 H 0.421 0.579 14 C 0.060 3.940 15 C 0.122 3.878 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.590 5.590 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.177 3.823 28 C -0.127 4.127 29 O -0.351 6.351 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.028 0.972 47 H 0.068 0.932 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -5.664 15.261 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.036 4.036 5 N -0.341 5.341 6 C 0.381 3.619 7 O -0.411 6.411 8 C -0.163 4.163 9 C -0.137 4.137 10 C -0.234 4.234 11 C -0.117 4.117 12 N -0.145 5.145 13 H 0.265 0.735 14 C -0.064 4.064 15 C 0.082 3.918 16 C -0.193 4.193 17 C 0.026 3.974 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.051 3.949 28 C -0.167 4.167 29 O -0.270 6.270 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.189 0.811 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.466 -5.676 15.421 16.794 hybrid contribution 0.658 -0.044 -0.908 1.122 sum 4.124 -5.719 14.513 16.135 Atomic orbital electron populations 1.21687 0.92390 1.02951 1.02797 1.22428 0.95414 0.96187 0.84877 0.91476 1.22414 0.78948 1.01962 1.00311 1.48050 1.07176 1.62865 1.16030 1.17152 0.84220 0.77626 0.82871 1.90813 1.75958 1.46314 1.28046 1.20304 0.91947 1.01439 1.02632 1.21280 0.91005 1.00765 1.00606 1.20886 0.98252 1.01511 1.02784 1.22125 0.84683 1.02192 1.02728 1.42962 1.06873 1.30575 1.34136 0.73497 1.23151 1.00052 0.98475 0.84735 1.21690 0.81044 0.95406 0.93694 1.22534 1.01174 0.95662 0.99918 1.20756 0.96574 0.93910 0.86164 1.44055 1.70998 1.06048 1.10162 1.19242 1.20349 1.13756 0.84657 0.91665 1.25003 0.96925 1.00503 0.97262 1.70040 1.26592 1.37678 1.20354 0.86250 0.80392 0.77808 0.82501 1.20319 1.21595 1.21739 1.20713 0.96302 0.83222 0.94685 1.22232 1.00885 0.98726 0.94861 1.88076 1.20387 1.76333 1.42240 0.91210 0.91030 0.91812 0.88249 0.90758 0.83691 0.83940 0.81147 0.90485 0.88668 0.92859 0.91587 0.93024 0.96024 0.93703 0.89104 0.95399 0.91356 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.57 37.16 0.36 -1.29 16 2 C 0.07 0.97 3.01 -26.57 -0.08 0.89 16 3 H 0.07 1.02 6.29 -51.93 -0.33 0.69 16 4 C 0.09 1.11 5.92 -3.53 -0.02 1.08 16 5 N -0.61 -8.22 2.53 -173.82 -0.44 -8.66 16 6 C 0.59 8.80 7.65 -12.85 -0.10 8.70 16 7 O -0.53 -9.33 16.45 5.19 0.09 -9.25 16 8 C -0.05 -0.67 6.49 -81.98 -0.53 -1.20 16 9 C -0.11 -1.37 10.74 -39.12 -0.42 -1.79 16 10 C -0.21 -2.16 10.81 -39.98 -0.43 -2.59 16 11 C 0.02 0.17 11.89 -16.91 -0.20 -0.03 16 12 N -0.54 -5.60 4.83 -9.39 -0.05 -5.65 16 13 H 0.42 3.62 6.08 -40.82 -0.25 3.37 16 14 C 0.06 0.76 4.38 -3.54 -0.02 0.74 16 15 C 0.12 1.94 0.68 -90.49 -0.06 1.88 16 16 C -0.15 -2.66 4.33 -26.64 -0.12 -2.78 16 17 C 0.15 3.21 6.28 -3.71 -0.02 3.19 16 18 N -0.59 -14.44 3.00 -172.32 -0.52 -14.96 16 19 C -0.25 -6.75 9.60 -15.06 -0.14 -6.89 16 20 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 22 N -0.90 -25.71 11.07 55.49 0.61 -25.10 16 23 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.18 4.08 5.09 -3.71 -0.02 4.06 16 28 C -0.13 -2.24 5.10 -26.63 -0.14 -2.38 16 29 O -0.35 -5.89 8.64 -35.23 -0.30 -6.20 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.29 7.08 -51.93 -0.37 0.92 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.10 3.80 -51.93 -0.20 0.90 16 40 H 0.05 0.89 6.16 -51.93 -0.32 0.57 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.08 7.93 -51.92 -0.41 0.67 16 43 H 0.02 0.48 7.82 -51.93 -0.41 0.07 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 46 H 0.03 0.71 7.83 -51.93 -0.41 0.30 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -32.19 368.32 -9.31 -41.50 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.19 Total: 4.94 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.03 Total: 1.54 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.39 Total: -54.37 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.22 Total: -15.44 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.19 -9.31 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098565685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.651 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds