Wall clock time and date at job start Tue Mar 31 2020 17:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50963 * 2 1 4 4 C 1.53295 * 109.51435 * 120.10038 * 2 1 3 5 5 N 1.47146 * 108.37588 * 172.27825 * 4 2 1 6 6 C 1.34785 * 120.98533 * 129.40725 * 5 4 2 7 7 O 1.21630 * 119.99473 * 186.52076 * 6 5 4 8 8 C 1.47263 * 120.00031 * 6.51708 * 6 5 4 9 9 C 1.46685 * 126.93841 * 24.23859 * 8 6 5 10 10 C 1.34489 * 106.33100 * 179.97438 * 9 8 6 11 11 N 1.36454 * 108.85268 * 359.73680 * 10 9 8 12 12 H 0.96998 * 124.85262 * 180.29675 * 11 10 9 13 13 C 1.34652 * 110.29739 * 0.44466 * 11 10 9 14 14 C 1.47148 * 118.03095 * 309.68144 * 5 4 2 15 15 C 1.52814 * 108.64897 * 50.13410 * 14 5 4 16 16 C 1.52981 * 109.23908 * 68.04557 * 15 14 5 17 17 C 1.53188 * 109.34863 * 181.13126 * 16 15 14 18 18 N 1.46933 * 108.77373 * 305.42661 * 17 16 15 19 19 C 1.36945 * 120.64156 * 233.64699 * 18 17 16 20 20 H 1.08000 * 119.99670 * 36.65535 * 19 18 17 21 21 C 1.38807 * 119.99921 * 216.65304 * 19 18 17 22 22 N 1.31624 * 120.00083 * 11.98530 * 21 19 18 23 23 Si 1.86802 * 119.99933 * 191.98265 * 21 19 18 24 24 H 1.48503 * 109.47275 * 60.00137 * 23 21 19 25 25 H 1.48505 * 109.46989 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47081 * 300.00138 * 23 21 19 27 27 C 1.46920 * 118.71936 * 53.66721 * 18 17 16 28 28 C 1.53001 * 109.43782 * 188.08142 * 15 14 5 29 29 O 1.42894 * 109.40711 * 308.11765 * 15 14 5 30 30 H 1.08994 * 109.47624 * 299.89314 * 1 2 3 31 31 H 1.08997 * 109.47156 * 59.90551 * 1 2 3 32 32 H 1.09001 * 109.46928 * 179.89870 * 1 2 3 33 33 H 1.09001 * 109.68211 * 52.55671 * 4 2 1 34 34 H 1.09005 * 109.71922 * 292.02225 * 4 2 1 35 35 H 1.07997 * 126.83825 * 359.95740 * 9 8 6 36 36 H 1.07996 * 125.57486 * 179.97438 * 10 9 8 37 37 H 1.08006 * 125.80270 * 179.82072 * 13 11 10 38 38 H 1.08994 * 109.68525 * 169.92610 * 14 5 4 39 39 H 1.09004 * 109.67311 * 290.47564 * 14 5 4 40 40 H 1.09006 * 109.49237 * 301.09079 * 16 15 14 41 41 H 1.09002 * 109.49594 * 61.16608 * 16 15 14 42 42 H 1.08999 * 109.58936 * 185.64359 * 17 16 15 43 43 H 1.08996 * 109.59194 * 65.21167 * 17 16 15 44 44 H 0.96996 * 119.99892 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.58804 * 186.54539 * 27 18 17 46 46 H 1.09002 * 109.71019 * 66.18831 * 27 18 17 47 47 H 1.09003 * 109.48870 * 298.95210 * 28 15 14 48 48 H 1.08999 * 109.48873 * 58.99918 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 1.2500 5 7 3.5013 -0.8744 1.1343 6 6 4.3191 -0.5001 2.1383 7 8 5.5248 -0.5203 1.9800 8 6 3.7526 -0.0667 3.4266 9 6 2.4403 -0.4226 3.9770 10 6 2.3493 0.1959 5.1677 11 7 3.5000 0.8945 5.3909 12 1 3.6829 1.4226 6.1837 13 6 4.3440 0.7485 4.3519 14 6 4.0418 -1.4392 -0.1123 15 6 3.4306 -0.6880 -1.2944 16 6 3.9554 0.7489 -1.3042 17 6 3.3225 1.5125 -2.4718 18 7 3.5732 0.7692 -3.7142 19 6 4.1559 1.3843 -4.7901 20 1 4.9303 2.1212 -4.6366 21 6 3.7510 1.0607 -6.0777 22 7 2.6596 0.3493 -6.2653 23 14 4.7552 1.6348 -7.5446 24 1 6.1298 1.0808 -7.4508 25 1 4.1155 1.1610 -8.7983 26 1 4.8188 3.1185 -7.5507 27 6 3.1864 -0.6466 -3.7802 28 6 3.8208 -1.3867 -2.5984 29 8 2.0076 -0.6767 -1.1653 30 1 -0.3634 0.5121 0.8909 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3633 -1.0277 -0.0018 33 1 1.5766 -1.7077 1.3211 34 1 1.8023 -0.1400 2.1382 35 1 1.6954 -1.0552 3.5174 36 1 1.5051 0.1447 5.8394 37 1 5.3235 1.1954 4.2659 38 1 5.1256 -1.3252 -0.1275 39 1 3.7823 -2.4958 -0.1793 40 1 3.6943 1.2380 -0.3657 41 1 5.0392 0.7396 -1.4206 42 1 3.7677 2.5048 -2.5436 43 1 2.2484 1.6024 -2.3102 44 1 2.3769 0.1228 -7.1650 45 1 3.5415 -1.0793 -4.7155 46 1 2.1012 -0.7341 -3.7260 47 1 4.9056 -1.3792 -2.7046 48 1 3.4643 -2.4166 -2.5799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098602668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:02 Heat of formation + Delta-G solvation = 6.739192 kcal Electronic energy + Delta-G solvation = -30536.497210 eV Core-core repulsion = 26593.480283 eV Total energy + Delta-G solvation = -3943.016928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46664 -40.26454 -38.32658 -36.26291 -34.45047 -33.47868 -31.59865 -31.25065 -30.04329 -29.61910 -29.32025 -27.14661 -26.20149 -24.27513 -22.68335 -22.22972 -21.65317 -20.97300 -20.27719 -19.26928 -18.87076 -18.22371 -16.86269 -16.33330 -15.94587 -15.50256 -15.21353 -14.85849 -14.67585 -14.32024 -14.11510 -13.96686 -13.79691 -13.49951 -13.25123 -13.20941 -13.12317 -12.86800 -12.46207 -12.33964 -12.15967 -11.81104 -11.64094 -11.44183 -11.30866 -11.19483 -10.90833 -10.72413 -10.55977 -10.28931 -10.13568 -9.99408 -9.84339 -9.68709 -9.39573 -9.19914 -9.02089 -8.65000 -8.38199 -8.17459 -6.41411 -5.69719 -3.21370 1.67881 2.15484 2.83963 3.16600 3.43375 3.46326 3.48267 3.49993 4.02640 4.56258 4.61877 4.77993 4.85118 4.89235 5.08597 5.16453 5.22071 5.33944 5.38599 5.45661 5.49573 5.57464 5.58549 5.66701 5.71167 5.73505 5.76778 5.92516 6.01653 6.11499 6.17810 6.27641 6.41797 6.42816 6.47264 6.50204 6.62487 6.66378 6.71345 6.79736 6.88646 7.13288 7.14605 7.45406 7.55053 7.75236 7.80010 7.89432 8.34525 8.60736 9.33161 9.93512 10.57445 11.37988 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.003141 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.398793 B = 8911.782184 C = 9342.731924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.065 0.935 4 C 0.067 3.933 5 N -0.604 5.604 6 C 0.591 3.409 7 O -0.552 6.552 8 C -0.227 4.227 9 C -0.176 4.176 10 C -0.017 4.017 11 N -0.555 5.555 12 H 0.417 0.583 13 C 0.071 3.929 14 C 0.089 3.911 15 C 0.121 3.879 16 C -0.152 4.152 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.258 4.258 20 H 0.059 0.941 21 C 0.011 3.989 22 N -0.898 5.898 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.184 3.816 28 C -0.126 4.126 29 O -0.355 6.355 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -1.543 24.384 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 H 0.082 0.918 4 C -0.056 4.056 5 N -0.336 5.336 6 C 0.381 3.619 7 O -0.431 6.431 8 C -0.237 4.237 9 C -0.201 4.201 10 C -0.145 4.145 11 N -0.149 5.149 12 H 0.254 0.746 13 C -0.065 4.065 14 C -0.033 4.033 15 C 0.081 3.919 16 C -0.191 4.191 17 C 0.027 3.973 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.076 0.924 21 C -0.189 4.189 22 N -0.541 5.541 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.058 3.942 28 C -0.166 4.166 29 O -0.274 6.274 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.193 0.807 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.475 -1.638 24.098 24.402 hybrid contribution 0.613 0.553 -0.203 0.850 sum -2.862 -1.085 23.894 24.090 Atomic orbital electron populations 1.21687 0.92788 1.02806 1.02560 1.22407 0.95071 0.96176 0.85355 0.91755 1.23014 0.80177 1.01740 1.00665 1.47854 1.06781 1.62978 1.15983 1.17425 0.85561 0.76338 0.82566 1.90766 1.14445 1.55211 1.82643 1.20373 0.97361 1.08785 0.97220 1.22285 0.96847 1.04974 0.95947 1.21828 0.91538 1.01170 0.99962 1.41639 1.14498 1.40703 1.18108 0.74628 1.21808 0.96331 1.00877 0.87521 1.22368 1.00825 0.97201 0.82930 1.21615 0.80558 0.95450 0.94282 1.22517 1.01315 0.95828 0.99466 1.20783 0.96359 0.93846 0.86304 1.43903 1.71208 1.05722 1.10293 1.19050 1.13508 1.21690 0.84569 0.92361 1.25276 0.95736 0.99816 0.98060 1.70003 1.21995 1.41427 1.20708 0.86417 0.79780 0.78573 0.82192 1.20936 1.21649 1.20870 1.20556 0.96315 0.83387 0.93922 1.22201 1.01043 0.98567 0.94804 1.88050 1.20894 1.76293 1.42137 0.91464 0.91183 0.91886 0.91126 0.87325 0.83052 0.81358 0.80701 0.88420 0.91284 0.93128 0.91520 0.93269 0.96214 0.93627 0.90829 0.95254 0.91210 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.57 37.16 0.36 -1.26 16 2 C 0.07 0.97 3.01 -26.58 -0.08 0.89 16 3 H 0.06 0.99 6.29 -51.93 -0.33 0.66 16 4 C 0.07 0.81 4.62 -3.54 -0.02 0.79 16 5 N -0.60 -8.91 2.53 -173.90 -0.44 -9.35 16 6 C 0.59 9.18 7.66 -12.59 -0.10 9.08 16 7 O -0.55 -10.38 16.47 5.25 0.09 -10.30 16 8 C -0.23 -2.74 5.77 -103.35 -0.60 -3.33 16 9 C -0.18 -1.60 8.66 -37.50 -0.32 -1.93 16 10 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 11 N -0.55 -3.43 5.90 -12.85 -0.08 -3.50 16 12 H 0.42 1.10 8.96 -40.82 -0.37 0.74 16 13 C 0.07 0.67 11.77 -16.85 -0.20 0.47 16 14 C 0.09 1.45 5.27 -3.78 -0.02 1.43 16 15 C 0.12 2.20 0.68 -90.72 -0.06 2.14 16 16 C -0.15 -2.94 4.31 -26.64 -0.11 -3.05 16 17 C 0.15 3.46 6.28 -3.71 -0.02 3.44 16 18 N -0.59 -15.35 2.95 -172.32 -0.51 -15.86 16 19 C -0.26 -7.32 9.50 -15.06 -0.14 -7.46 16 20 H 0.06 1.64 7.86 -52.49 -0.41 1.22 16 21 C 0.01 0.31 4.98 -17.43 -0.09 0.22 16 22 N -0.90 -26.67 11.55 55.49 0.64 -26.03 16 23 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 C 0.18 4.54 5.00 -3.71 -0.02 4.52 16 28 C -0.13 -2.52 5.10 -26.63 -0.14 -2.65 16 29 O -0.35 -6.39 8.65 -35.23 -0.30 -6.70 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.11 4.16 -51.93 -0.22 0.89 16 35 H 0.15 1.19 6.29 -52.49 -0.33 0.86 16 36 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.10 1.71 7.05 -51.93 -0.37 1.34 16 39 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 40 H 0.05 0.92 6.16 -51.93 -0.32 0.60 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.02 0.46 7.82 -51.93 -0.41 0.06 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.07 2.00 6.57 -51.93 -0.34 1.66 16 46 H 0.03 0.78 7.83 -51.93 -0.41 0.38 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -35.06 369.50 -9.09 -44.15 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.26 Total: 1.94 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.76 Total: 2.99 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.38 Total: -54.74 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.22 Total: -16.99 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.06 -9.09 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098602668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.887 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds