Wall clock time and date at job start Tue Mar 31 2020 17:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 110.64229 * 2 1 4 4 C 1.54327 * 110.87018 * 236.75064 * 2 1 3 5 5 N 1.47014 * 107.27028 * 219.37326 * 4 2 1 6 6 C 1.36943 * 125.64451 * 178.98797 * 5 4 2 7 7 H 1.08007 * 119.99800 * 174.78880 * 6 5 4 8 8 C 1.38805 * 120.00426 * 354.79028 * 6 5 4 9 9 N 1.31624 * 119.99706 * 7.04829 * 8 6 5 10 10 Si 1.86799 * 120.00397 * 187.05496 * 8 6 5 11 11 H 1.48497 * 109.47385 * 94.98143 * 10 8 6 12 12 H 1.48501 * 109.47041 * 214.98885 * 10 8 6 13 13 H 1.48504 * 109.46909 * 334.98626 * 10 8 6 14 14 C 1.47421 * 108.70349 * 358.94427 * 5 4 2 15 15 C 1.54901 * 104.83315 * 24.12776 * 14 5 4 16 16 H 1.09001 * 111.03851 * 81.08392 * 15 14 5 17 17 C 1.53004 * 111.00573 * 204.91599 * 15 14 5 18 18 N 1.46505 * 109.46952 * 287.19912 * 17 15 14 19 19 C 1.34779 * 119.99900 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99875 * 0.27285 * 19 18 17 21 21 C 1.50696 * 120.00127 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47319 * 179.97438 * 21 19 18 23 23 N 1.46495 * 109.47091 * 180.02562 * 22 21 19 24 24 C 1.35756 * 119.62884 * 269.72729 * 23 22 21 25 25 C 1.35353 * 120.70713 * 179.76228 * 24 23 22 26 26 C 1.40202 * 119.94566 * 0.51591 * 25 24 23 27 27 C 1.36404 * 119.26284 * 359.73998 * 26 25 24 28 28 C 1.34664 * 119.62610 * 90.00594 * 23 22 21 29 29 O 1.22064 * 119.98139 * 359.97438 * 28 23 22 30 30 H 1.08996 * 109.46585 * 296.85587 * 1 2 3 31 31 H 1.09002 * 109.46796 * 56.85450 * 1 2 3 32 32 H 1.08996 * 109.47264 * 176.85866 * 1 2 3 33 33 H 1.09000 * 109.88192 * 338.79819 * 4 2 1 34 34 H 1.09000 * 109.88076 * 99.95773 * 4 2 1 35 35 H 0.96999 * 119.99711 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.36898 * 265.28417 * 14 5 4 37 37 H 1.09008 * 110.36402 * 142.96687 * 14 5 4 38 38 H 1.08998 * 109.47186 * 167.19829 * 17 15 14 39 39 H 1.08996 * 109.46957 * 47.19152 * 17 15 14 40 40 H 0.96993 * 120.00045 * 359.97438 * 18 17 15 41 41 H 1.08997 * 109.47485 * 300.00600 * 21 19 18 42 42 H 1.09002 * 109.46696 * 59.99757 * 21 19 18 43 43 H 1.09005 * 109.47379 * 300.00528 * 22 21 19 44 44 H 1.09002 * 109.47233 * 60.00333 * 22 21 19 45 45 H 1.08004 * 119.65125 * 0.02562 * 24 23 22 46 46 H 1.07995 * 120.03282 * 180.27814 * 25 24 23 47 47 H 1.08000 * 120.36691 * 179.76784 * 26 25 24 48 48 H 1.08001 * 120.34535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0125 -2.3917 -1.4966 7 1 4.9036 -2.8377 -1.0799 8 6 3.6409 -2.6749 -2.8037 9 7 2.6374 -2.0277 -3.3574 10 14 4.5649 -3.9744 -3.7769 11 1 3.8535 -5.2733 -3.6680 12 1 4.6363 -3.5670 -5.2031 13 1 5.9395 -4.1158 -3.2330 14 6 3.4652 -1.2447 0.6913 15 6 2.0790 -0.7935 1.2150 16 1 1.4465 -1.6526 1.4387 17 6 2.2237 0.1110 2.4406 18 7 2.6289 -0.6933 3.5961 19 6 2.8187 -0.1048 4.7936 20 8 2.6492 1.0899 4.9158 21 6 3.2350 -0.9322 5.9823 22 6 3.3810 -0.0276 7.2075 23 7 3.7862 -0.8319 8.3629 24 6 2.8379 -1.3788 9.1657 25 6 3.1877 -2.1297 10.2362 26 6 4.5422 -2.3399 10.5310 27 6 5.4936 -1.7854 9.7261 28 6 5.0953 -1.0157 8.6198 29 8 5.9363 -0.5136 7.8914 30 1 -0.3632 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3190 -1.4772 -1.5771 34 1 2.3776 -0.1016 -1.9963 35 1 2.3780 -2.2253 -4.2709 36 1 4.1930 -0.4410 0.8029 37 1 3.7992 -2.1366 1.2217 38 1 1.2692 0.5937 2.6506 39 1 2.9798 0.8711 2.2439 40 1 2.7606 -1.6494 3.4992 41 1 2.4785 -1.6919 6.1792 42 1 4.1891 -1.4157 5.7722 43 1 4.1378 0.7318 7.0104 44 1 2.4271 0.4562 7.4177 45 1 1.7931 -1.2166 8.9455 46 1 2.4243 -2.5633 10.8650 47 1 4.8290 -2.9347 11.3856 48 1 6.5421 -1.9364 9.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102020439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:15 Heat of formation + Delta-G solvation = -20.414757 kcal Electronic energy + Delta-G solvation = -27933.382891 eV Core-core repulsion = 23989.188480 eV Total energy + Delta-G solvation = -3944.194411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69752 -39.81188 -38.05970 -37.20156 -35.46387 -34.70318 -32.98386 -31.61698 -30.75398 -30.18629 -29.23925 -26.25456 -25.68875 -24.79497 -24.02603 -22.91639 -22.29408 -20.64249 -20.01926 -19.23187 -18.10508 -17.66879 -17.14460 -16.75230 -16.51929 -16.17919 -15.89542 -15.61348 -14.96662 -14.79903 -14.50762 -14.36647 -13.98221 -13.71064 -13.53736 -13.04709 -12.98412 -12.93307 -12.69689 -12.54867 -12.34961 -12.11605 -11.86218 -11.70908 -11.54476 -11.39355 -11.25259 -10.82013 -10.80650 -10.57873 -10.26237 -10.21814 -10.06006 -10.00510 -9.94442 -9.70240 -9.58033 -9.03090 -8.59357 -8.34703 -6.84291 -5.73914 -3.06310 0.44944 1.51502 2.20713 2.52361 3.14906 3.34718 3.38844 3.44330 3.46308 4.15512 4.26103 4.38662 4.47956 4.51007 4.64613 4.74421 4.85548 4.92039 5.02064 5.09797 5.17380 5.31060 5.36141 5.48816 5.51454 5.53059 5.59956 5.70816 5.73144 5.83669 5.89247 5.99837 6.06791 6.13624 6.15797 6.25714 6.38724 6.46225 6.55464 6.59671 6.72772 6.73265 6.92035 7.43767 7.55157 7.63151 7.72393 7.82094 8.11928 8.24515 9.20453 9.80932 10.47345 11.38081 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002105 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.600955 B =13301.225620 C =14426.285981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.721 5.721 19 C 0.518 3.482 20 O -0.545 6.545 21 C -0.157 4.157 22 C 0.106 3.894 23 N -0.496 5.496 24 C 0.135 3.865 25 C -0.236 4.236 26 C -0.018 4.018 27 C -0.244 4.244 28 C 0.509 3.491 29 O -0.546 6.546 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.403 0.597 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.162 0.838 46 H 0.145 0.855 47 H 0.134 0.866 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -0.181 27.344 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.008 3.992 18 N -0.372 5.372 19 C 0.304 3.696 20 O -0.423 6.423 21 C -0.198 4.198 22 C -0.015 4.015 23 N -0.207 5.207 24 C 0.007 3.993 25 C -0.259 4.259 26 C -0.040 4.040 27 C -0.266 4.266 28 C 0.311 3.689 29 O -0.428 6.428 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.180 0.820 46 H 0.162 0.838 47 H 0.152 0.848 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.465 0.960 26.660 27.049 hybrid contribution 0.464 -1.318 -0.608 1.524 sum -4.001 -0.358 26.052 26.360 Atomic orbital electron populations 1.21691 0.95297 1.01604 1.00553 1.22440 0.95150 0.99137 0.96326 0.91424 1.21229 0.89192 0.93057 0.90714 1.44471 1.32590 1.51748 1.04459 1.19057 1.04331 1.18524 0.93861 0.90477 1.24823 0.98529 0.99931 0.97109 1.69979 1.30140 1.42763 1.13792 0.86123 0.78926 0.81501 0.79391 1.21634 1.21759 1.20636 1.21593 0.92988 0.97074 0.86854 1.22673 0.99432 0.98032 0.93096 0.90156 1.21433 1.00168 0.93808 0.83753 1.46072 1.69455 1.12413 1.09281 1.20205 0.77172 0.88191 0.84080 1.90721 1.51545 1.15181 1.84893 1.21948 1.04738 0.99538 0.93553 1.21723 1.03756 0.93375 0.82686 1.45637 1.07633 1.42947 1.24452 1.22028 0.94855 0.92069 0.90307 1.20671 0.97190 1.07064 1.01019 1.21458 0.92592 0.93154 0.96753 1.22166 1.01621 1.04969 0.97819 1.17237 0.81015 0.83246 0.87373 1.91007 1.49131 1.51655 1.51026 0.93685 0.92742 0.92721 0.93146 0.94222 0.93755 0.96354 0.94585 0.91544 0.91286 0.76285 0.88384 0.87849 0.87143 0.88101 0.82045 0.83773 0.84849 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.17 37.16 0.34 -1.69 16 2 C -0.11 -1.97 3.01 -88.78 -0.27 -2.24 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.34 4.98 -3.07 -0.02 4.33 16 5 N -0.61 -15.30 3.39 -170.08 -0.58 -15.88 16 6 C -0.23 -6.38 10.27 -15.06 -0.15 -6.53 16 7 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 9 N -0.92 -26.90 10.36 55.49 0.57 -26.32 16 10 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.14 2.81 6.65 -2.54 -0.02 2.80 16 15 C -0.11 -1.81 2.49 -88.48 -0.22 -2.03 16 16 H 0.08 1.26 8.05 -51.93 -0.42 0.85 16 17 C 0.13 1.84 5.13 -4.04 -0.02 1.82 16 18 N -0.72 -8.53 5.50 -60.29 -0.33 -8.86 16 19 C 0.52 6.24 7.83 -10.99 -0.09 6.16 16 20 O -0.55 -8.46 15.98 5.55 0.09 -8.38 16 21 C -0.16 -1.36 6.02 -27.89 -0.17 -1.53 16 22 C 0.11 0.95 4.62 -4.05 -0.02 0.93 16 23 N -0.50 -4.16 2.58 -119.77 -0.31 -4.47 16 24 C 0.13 0.68 10.28 -16.84 -0.17 0.50 16 25 C -0.24 -1.04 10.01 -39.87 -0.40 -1.44 16 26 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 27 C -0.24 -2.09 9.99 -39.38 -0.39 -2.48 16 28 C 0.51 5.79 7.41 -15.45 -0.11 5.67 16 29 O -0.55 -8.59 16.64 4.86 0.08 -8.51 16 30 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 1.32 6.93 -51.93 -0.36 0.96 16 34 H 0.04 1.06 7.61 -51.93 -0.40 0.67 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 40 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.30 7.35 -51.93 -0.38 0.92 16 44 H 0.10 0.72 7.96 -51.93 -0.41 0.30 16 45 H 0.16 0.28 8.03 -52.48 -0.42 -0.14 16 46 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 47 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 48 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -35.92 394.23 -9.50 -45.43 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.74 Total: 0.55 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.20 Total: 3.45 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.64 Total: -55.53 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.17 Total: -16.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.92 -9.50 -45.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102020439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.011 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds