Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 110.64229 * 2 1 4 4 C 1.54327 * 110.87018 * 236.75064 * 2 1 3 5 5 N 1.47014 * 107.27028 * 219.37326 * 4 2 1 6 6 C 1.36943 * 125.64451 * 178.98797 * 5 4 2 7 7 H 1.08007 * 119.99800 * 174.78880 * 6 5 4 8 8 C 1.38805 * 120.00426 * 354.79028 * 6 5 4 9 9 N 1.31624 * 119.99706 * 7.04829 * 8 6 5 10 10 Si 1.86799 * 120.00397 * 187.05496 * 8 6 5 11 11 H 1.48497 * 109.47385 * 94.98143 * 10 8 6 12 12 H 1.48501 * 109.47041 * 214.98885 * 10 8 6 13 13 H 1.48504 * 109.46909 * 334.98626 * 10 8 6 14 14 C 1.47421 * 108.70349 * 358.94427 * 5 4 2 15 15 C 1.54901 * 104.83315 * 24.12776 * 14 5 4 16 16 H 1.09001 * 111.03851 * 81.08392 * 15 14 5 17 17 C 1.53004 * 111.00573 * 204.91599 * 15 14 5 18 18 N 1.46505 * 109.46952 * 287.19912 * 17 15 14 19 19 C 1.34779 * 119.99900 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99875 * 0.27285 * 19 18 17 21 21 C 1.50696 * 120.00127 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47319 * 179.97438 * 21 19 18 23 23 N 1.46495 * 109.47091 * 180.02562 * 22 21 19 24 24 C 1.35756 * 119.62884 * 269.72729 * 23 22 21 25 25 C 1.35353 * 120.70713 * 179.76228 * 24 23 22 26 26 C 1.40202 * 119.94566 * 0.51591 * 25 24 23 27 27 C 1.36404 * 119.26284 * 359.73998 * 26 25 24 28 28 C 1.34664 * 119.62610 * 90.00594 * 23 22 21 29 29 O 1.22064 * 119.98139 * 359.97438 * 28 23 22 30 30 H 1.08996 * 109.46585 * 296.85587 * 1 2 3 31 31 H 1.09002 * 109.46796 * 56.85450 * 1 2 3 32 32 H 1.08996 * 109.47264 * 176.85866 * 1 2 3 33 33 H 1.09000 * 109.88192 * 338.79819 * 4 2 1 34 34 H 1.09000 * 109.88076 * 99.95773 * 4 2 1 35 35 H 0.96999 * 119.99711 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.36898 * 265.28417 * 14 5 4 37 37 H 1.09008 * 110.36402 * 142.96687 * 14 5 4 38 38 H 1.08998 * 109.47186 * 167.19829 * 17 15 14 39 39 H 1.08996 * 109.46957 * 47.19152 * 17 15 14 40 40 H 0.96993 * 120.00045 * 359.97438 * 18 17 15 41 41 H 1.08997 * 109.47485 * 300.00600 * 21 19 18 42 42 H 1.09002 * 109.46696 * 59.99757 * 21 19 18 43 43 H 1.09005 * 109.47379 * 300.00528 * 22 21 19 44 44 H 1.09002 * 109.47233 * 60.00333 * 22 21 19 45 45 H 1.08004 * 119.65125 * 0.02562 * 24 23 22 46 46 H 1.07995 * 120.03282 * 180.27814 * 25 24 23 47 47 H 1.08000 * 120.36691 * 179.76784 * 26 25 24 48 48 H 1.08001 * 120.34535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0125 -2.3917 -1.4966 7 1 4.9036 -2.8377 -1.0799 8 6 3.6409 -2.6749 -2.8037 9 7 2.6374 -2.0277 -3.3574 10 14 4.5649 -3.9744 -3.7769 11 1 3.8535 -5.2733 -3.6680 12 1 4.6363 -3.5670 -5.2031 13 1 5.9395 -4.1158 -3.2330 14 6 3.4652 -1.2447 0.6913 15 6 2.0790 -0.7935 1.2150 16 1 1.4465 -1.6526 1.4387 17 6 2.2237 0.1110 2.4406 18 7 2.6289 -0.6933 3.5961 19 6 2.8187 -0.1048 4.7936 20 8 2.6492 1.0899 4.9158 21 6 3.2350 -0.9322 5.9823 22 6 3.3810 -0.0276 7.2075 23 7 3.7862 -0.8319 8.3629 24 6 2.8379 -1.3788 9.1657 25 6 3.1877 -2.1297 10.2362 26 6 4.5422 -2.3399 10.5310 27 6 5.4936 -1.7854 9.7261 28 6 5.0953 -1.0157 8.6198 29 8 5.9363 -0.5136 7.8914 30 1 -0.3632 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3190 -1.4772 -1.5771 34 1 2.3776 -0.1016 -1.9963 35 1 2.3780 -2.2253 -4.2709 36 1 4.1930 -0.4410 0.8029 37 1 3.7992 -2.1366 1.2217 38 1 1.2692 0.5937 2.6506 39 1 2.9798 0.8711 2.2439 40 1 2.7606 -1.6494 3.4992 41 1 2.4785 -1.6919 6.1792 42 1 4.1891 -1.4157 5.7722 43 1 4.1378 0.7318 7.0104 44 1 2.4271 0.4562 7.4177 45 1 1.7931 -1.2166 8.9455 46 1 2.4243 -2.5633 10.8650 47 1 4.8290 -2.9347 11.3856 48 1 6.5421 -1.9364 9.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102020439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = -44.857901 kcal Electronic energy + Delta-G solvation = -27934.442825 eV Core-core repulsion = 23989.188480 eV Total energy + Delta-G solvation = -3945.254346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.34372 -40.85938 -39.58868 -37.95839 -36.23568 -35.87816 -34.68895 -32.56938 -32.39315 -30.82456 -30.52410 -27.90709 -26.98914 -25.93574 -24.67554 -24.27534 -23.10879 -21.75288 -21.60325 -20.65327 -18.97114 -18.68220 -18.26731 -17.86071 -17.35883 -17.03619 -16.87644 -16.68347 -16.39917 -15.88778 -15.65013 -15.38037 -15.14199 -14.99989 -14.65057 -14.36763 -14.26795 -14.07500 -13.79012 -13.44149 -13.27951 -13.20645 -13.09290 -12.88477 -12.81546 -12.69590 -12.68502 -12.41618 -12.25394 -11.94301 -11.87176 -11.57988 -11.44890 -11.37956 -11.18274 -11.00019 -10.83946 -10.69882 -10.09331 -8.94441 -8.90589 -7.87495 -5.22019 -0.04194 0.95733 1.44502 1.45864 1.54332 1.54967 1.58788 2.25448 2.47848 2.72646 3.29943 3.58506 3.60685 3.68014 3.72431 3.83067 3.93036 3.94206 3.98541 4.03720 4.21641 4.33447 4.37084 4.40025 4.49025 4.52308 4.60384 4.71550 4.73396 4.79797 4.81021 4.85477 4.95924 5.08824 5.12002 5.15726 5.23904 5.35027 5.37432 5.44610 5.46520 5.48309 5.70260 5.70736 5.80997 6.13423 6.19171 6.50074 7.01351 7.09194 7.18221 7.76723 8.41502 9.23125 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002105 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.600955 B =13301.225620 C =14426.285981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.191 3.809 5 N -0.630 5.630 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.066 4.066 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.284 1.284 12 H -0.296 1.296 13 H -0.270 1.270 14 C 0.136 3.864 15 C -0.088 4.088 16 H 0.093 0.907 17 C 0.144 3.856 18 N -0.716 5.716 19 C 0.520 3.480 20 O -0.581 6.581 21 C -0.144 4.144 22 C 0.109 3.891 23 N -0.492 5.492 24 C 0.131 3.869 25 C -0.229 4.229 26 C 0.007 3.993 27 C -0.285 4.285 28 C 0.490 3.510 29 O -0.615 6.615 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.020 0.980 34 H -0.005 1.005 35 H 0.247 0.753 36 H 0.012 0.988 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.414 0.586 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.204 0.796 46 H 0.183 0.817 47 H 0.165 0.835 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -1.828 30.540 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.356 5.356 6 C -0.373 4.373 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.805 3.195 11 H -0.211 1.211 12 H -0.223 1.223 13 H -0.195 1.195 14 C 0.010 3.990 15 C -0.108 4.108 16 H 0.112 0.888 17 C 0.020 3.980 18 N -0.368 5.368 19 C 0.306 3.694 20 O -0.462 6.462 21 C -0.184 4.184 22 C -0.013 4.013 23 N -0.201 5.201 24 C 0.005 3.995 25 C -0.251 4.251 26 C -0.015 4.015 27 C -0.307 4.307 28 C 0.296 3.704 29 O -0.503 6.503 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.030 0.970 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.250 0.750 41 H 0.156 0.844 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.143 0.857 45 H 0.221 0.779 46 H 0.201 0.799 47 H 0.183 0.817 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.752 -0.724 29.920 30.681 hybrid contribution 1.130 -0.819 -1.502 2.050 sum -5.622 -1.543 28.418 29.010 Atomic orbital electron populations 1.21634 0.92709 1.01755 1.02272 1.22321 0.97176 0.98457 0.94241 0.90985 1.21003 0.88205 0.91917 0.92317 1.44812 1.32616 1.51523 1.06636 1.19439 1.04754 1.18627 0.94478 0.90194 1.25668 0.99834 1.02086 0.98296 1.70202 1.31726 1.44112 1.13683 0.85081 0.78190 0.78812 0.77390 1.21080 1.22254 1.19453 1.21778 0.95297 0.97355 0.84524 1.22462 0.96729 0.98427 0.93168 0.88835 1.21160 1.00444 0.92993 0.83414 1.45975 1.69218 1.12852 1.08706 1.20690 0.76125 0.87905 0.84632 1.90711 1.53131 1.16893 1.85454 1.21876 1.05220 0.99539 0.91780 1.21636 1.03467 0.92912 0.83324 1.45577 1.07405 1.42579 1.24562 1.22820 0.95894 0.91110 0.89650 1.21212 0.97342 1.05832 1.00720 1.21891 0.92642 0.90879 0.96040 1.22102 1.02353 1.07413 0.98803 1.17707 0.81596 0.83410 0.87736 1.90953 1.51013 1.54901 1.53455 0.90343 0.92837 0.93157 0.96199 0.98628 0.94383 0.97015 0.93408 0.90118 0.92946 0.74987 0.84384 0.88951 0.91024 0.85653 0.77897 0.79941 0.81720 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.17 71.99 0.66 -2.93 16 2 C -0.10 -3.58 3.01 -9.60 -0.03 -3.61 16 3 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 4 C 0.19 9.38 4.98 86.73 0.43 9.81 16 5 N -0.63 -32.44 3.39 -692.01 -2.35 -34.79 16 6 C -0.24 -13.82 10.27 84.03 0.86 -12.95 16 7 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 8 C -0.07 -3.78 5.48 84.86 0.46 -3.31 16 9 N -0.95 -57.53 10.36 21.65 0.22 -57.30 16 10 Si 0.98 46.13 29.56 68.60 2.03 48.16 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.14 5.36 6.65 86.85 0.58 5.94 16 15 C -0.09 -2.70 2.49 -9.40 -0.02 -2.73 16 16 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 17 C 0.14 3.72 5.13 86.38 0.44 4.16 16 18 N -0.72 -15.34 5.50 -463.05 -2.55 -17.88 16 19 C 0.52 11.63 7.83 87.66 0.69 12.32 16 20 O -0.58 -17.48 15.98 -3.04 -0.05 -17.53 16 21 C -0.14 -2.22 6.02 29.85 0.18 -2.04 16 22 C 0.11 1.83 4.62 86.38 0.40 2.23 16 23 N -0.49 -7.56 2.58 -650.98 -1.68 -9.24 16 24 C 0.13 0.77 10.28 83.42 0.86 1.63 16 25 C -0.23 -0.93 10.01 22.08 0.22 -0.70 16 26 C 0.01 0.06 10.10 22.32 0.23 0.28 16 27 C -0.29 -4.88 9.99 22.40 0.22 -4.65 16 28 C 0.49 11.57 7.41 84.82 0.63 12.19 16 29 O -0.62 -21.19 16.64 -5.52 -0.09 -21.28 16 30 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.02 1.08 6.93 -2.39 -0.02 1.07 16 34 H 0.00 -0.26 7.61 -2.39 -0.02 -0.28 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.01 0.49 7.91 -2.39 -0.02 0.48 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 39 H 0.05 1.56 7.96 -2.39 -0.02 1.54 16 40 H 0.41 7.15 8.47 -92.71 -0.79 6.37 16 41 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.80 7.35 -2.38 -0.02 1.79 16 44 H 0.13 1.46 7.96 -2.39 -0.02 1.44 16 45 H 0.20 -0.53 8.03 -2.91 -0.02 -0.56 16 46 H 0.18 -0.56 8.06 -2.91 -0.02 -0.58 16 47 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 48 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -85.74 394.23 2.51 -83.24 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.16 Total: 11.00 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.81 Total: 15.63 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.35 Total: -119.22 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.14 Total: -38.81 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -85.74 2.51 -83.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102020439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.378 kcal (2) G-P(sol) polarization free energy of solvation -85.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds