Wall clock time and date at job start Tue Mar 31 2020 17:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35742 * 116.99730 * 2 1 4 4 C 1.39281 * 120.84802 * 0.02933 * 3 2 1 5 5 C 1.37947 * 119.09084 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82778 * 0.02562 * 5 4 3 7 7 C 1.31954 * 121.85980 * 359.97438 * 6 5 4 8 8 C 1.37987 * 120.82235 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.45565 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47870 * 265.00642 * 9 8 7 11 11 O 1.21289 * 119.99556 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00429 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00340 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47472 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.63985 * 54.29767 * 14 13 12 16 16 C 1.54324 * 110.72077 * 291.15717 * 14 13 12 17 17 N 1.47023 * 107.27151 * 219.44090 * 16 14 13 18 18 C 1.36929 * 125.65026 * 178.90016 * 17 16 14 19 19 H 1.08002 * 120.00089 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00602 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99421 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00586 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46926 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47050 * 120.00447 * 22 20 18 25 25 H 1.48495 * 109.47610 * 240.00688 * 22 20 18 26 26 C 1.47425 * 108.70265 * 358.94167 * 17 16 14 27 27 C 1.55124 * 104.94469 * 24.00507 * 26 17 16 28 28 H 1.08998 * 110.93768 * 81.21216 * 27 26 17 29 29 C 1.53005 * 111.16468 * 205.13294 * 27 26 17 30 30 H 1.08999 * 109.46588 * 299.99548 * 1 2 3 31 31 H 1.08995 * 109.47281 * 59.99391 * 1 2 3 32 32 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.45441 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.58700 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.58841 * 179.97438 * 7 6 5 36 36 H 1.09009 * 109.46736 * 25.00570 * 9 8 7 37 37 H 1.09006 * 109.46932 * 144.99842 * 9 8 7 38 38 H 0.97004 * 120.00303 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47161 * 300.00060 * 13 12 10 40 40 H 1.09000 * 109.46994 * 59.99693 * 13 12 10 41 41 H 1.08998 * 109.88001 * 338.86126 * 16 14 13 42 42 H 1.08995 * 109.87899 * 100.02902 * 16 14 13 43 43 H 0.96997 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.09008 * 110.36651 * 142.96415 * 26 17 16 45 45 H 1.08994 * 110.36953 * 265.17839 * 26 17 16 46 46 H 1.09000 * 109.47285 * 172.16707 * 29 27 26 47 47 H 1.08994 * 109.46713 * 292.16708 * 29 27 26 48 48 H 1.09002 * 109.46831 * 52.16565 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0006 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6458 0.0005 7 6 4.0231 2.5510 -0.0001 8 6 3.4346 1.3029 0.0004 9 6 4.2838 0.0580 -0.0008 10 6 4.4631 -0.4266 -1.4165 11 8 3.9511 0.1792 -2.3341 12 7 5.1913 -1.5335 -1.6628 13 6 5.3651 -2.0048 -3.0389 14 6 6.2274 -3.2687 -3.0401 15 1 5.8061 -4.0219 -2.3743 16 6 7.6810 -2.9383 -2.6406 17 7 8.5629 -3.7504 -3.4917 18 6 9.9318 -3.7351 -3.4664 19 1 10.4520 -3.0861 -2.7774 20 6 10.6512 -4.5545 -4.3255 21 7 10.0173 -5.3458 -5.1648 22 14 12.5187 -4.5342 -4.2904 23 1 12.9840 -3.5661 -3.2649 24 1 13.0223 -5.8903 -3.9549 25 1 13.0346 -4.1303 -5.6230 26 6 7.7292 -4.5832 -4.3776 27 6 6.3770 -3.8298 -4.4790 28 1 6.4346 -3.0226 -5.2091 29 6 5.2337 -4.7896 -4.8149 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2245 2.3566 0.0007 34 1 1.4007 4.5174 0.0020 35 1 5.1000 2.6328 -0.0009 36 1 5.2585 0.2827 0.4325 37 1 3.7938 -0.7167 0.5891 38 1 5.6004 -2.0182 -0.9288 39 1 4.3903 -2.2292 -3.4720 40 1 5.8552 -1.2305 -3.6290 41 1 7.8791 -1.8792 -2.8054 42 1 7.8434 -3.1893 -1.5925 43 1 10.5200 -5.9181 -5.7654 44 1 8.1906 -4.6702 -5.3614 45 1 7.5802 -5.5705 -3.9406 46 1 4.2829 -4.2615 -4.7428 47 1 5.3632 -5.1681 -5.8287 48 1 5.2406 -5.6229 -4.1122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102085034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:08 Heat of formation + Delta-G solvation = -19.838824 kcal Electronic energy + Delta-G solvation = -28375.213761 eV Core-core repulsion = 24431.044324 eV Total energy + Delta-G solvation = -3944.169437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07033 -39.50614 -38.46657 -37.93643 -34.62991 -33.56760 -32.91144 -31.47981 -30.75441 -29.68322 -28.18982 -27.64928 -25.94819 -25.00257 -23.19050 -23.18489 -22.36296 -20.57228 -19.82357 -19.25312 -18.63491 -17.44569 -17.18144 -16.70232 -16.22106 -16.07757 -15.43780 -15.26192 -15.10406 -14.83802 -14.53631 -14.28398 -13.94997 -13.73548 -13.55687 -13.28419 -13.24133 -12.85671 -12.63969 -12.55910 -12.11404 -11.91901 -11.87834 -11.56658 -11.48845 -11.38729 -11.14064 -10.87026 -10.81426 -10.23294 -10.03995 -9.94984 -9.88916 -9.78172 -9.71824 -9.43525 -9.33675 -8.95504 -8.90317 -8.65670 -6.83426 -5.65753 -3.07426 0.82377 1.11138 2.72560 2.79044 3.23612 3.39406 3.44922 3.47397 3.65744 4.15828 4.34741 4.48195 4.49374 4.58777 4.72964 4.77384 4.87001 4.98063 5.04613 5.11820 5.17519 5.26712 5.31691 5.33207 5.46930 5.49801 5.58714 5.65917 5.76992 5.79202 5.88404 6.08113 6.14509 6.20940 6.27417 6.28866 6.49234 6.54015 6.60202 6.62806 6.80440 6.85630 6.95792 7.53488 7.59963 7.63257 7.78001 7.86417 8.31454 8.36259 9.21922 9.82785 10.47709 11.38086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002276 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.323576 B =12300.398368 C =13303.140429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.147 4.147 9 C -0.091 4.091 10 C 0.515 3.485 11 O -0.539 6.539 12 N -0.725 5.725 13 C 0.134 3.866 14 C -0.109 4.109 15 H 0.076 0.924 16 C 0.142 3.858 17 N -0.605 5.605 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.159 3.841 27 C -0.112 4.112 28 H 0.071 0.929 29 C -0.134 4.134 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.401 0.599 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.251 0.749 44 H 0.106 0.894 45 H 0.013 0.987 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 10.511 12.360 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.024 4.024 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.132 4.132 10 C 0.301 3.699 11 O -0.416 6.416 12 N -0.377 5.377 13 C 0.010 3.990 14 C -0.129 4.129 15 H 0.094 0.906 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.034 3.966 27 C -0.132 4.132 28 H 0.089 0.911 29 C -0.192 4.192 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.940 11.425 11.587 25.737 hybrid contribution 0.401 -1.055 0.377 1.190 sum -19.539 10.370 11.964 25.149 Atomic orbital electron populations 1.23137 0.77769 1.04435 1.01551 1.86070 1.21860 1.26248 1.87482 1.19101 0.91827 0.84680 0.91502 1.22163 1.01417 0.93191 1.11607 1.22534 0.90358 0.96904 0.92612 1.67737 1.07078 1.31903 1.15173 1.22548 1.00304 0.86111 0.92098 1.19730 0.90814 0.96460 1.07992 1.20419 1.01128 0.96020 0.95615 1.20408 0.78280 0.80393 0.90831 1.90707 1.48168 1.56384 1.46375 1.46058 1.53236 1.28189 1.10181 1.21423 0.99528 0.95923 0.82085 1.22492 0.95778 0.95448 0.99151 0.90572 1.21333 0.88267 0.94870 0.93985 1.44493 1.01520 1.46101 1.40966 1.19118 0.80060 1.19232 1.16551 0.90479 1.24796 0.98229 0.98884 0.98866 1.69811 1.32954 1.28749 1.25547 0.86000 0.84974 0.77232 0.77310 1.20539 1.21783 1.21733 1.22014 0.85489 0.90538 0.98513 1.22635 0.97984 0.98507 0.94055 0.91083 1.21643 0.97100 0.98967 1.01452 0.92415 0.92283 0.87828 0.84447 0.82615 0.82157 0.87516 0.87581 0.76480 0.91828 0.91400 0.95796 0.96393 0.93789 0.87639 0.96932 0.93699 0.92680 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.14 9.77 -18.93 -0.18 -3.32 16 3 C 0.18 2.00 6.70 -38.82 -0.26 1.74 16 4 C -0.26 -2.42 9.11 -39.30 -0.36 -2.77 16 5 C 0.13 1.28 11.17 -17.60 -0.20 1.08 16 6 N -0.51 -5.98 10.36 -13.33 -0.14 -6.12 16 7 C 0.15 1.63 10.83 -17.59 -0.19 1.44 16 8 C -0.15 -1.65 4.40 -104.34 -0.46 -2.11 16 9 C -0.09 -0.89 5.61 -29.04 -0.16 -1.05 16 10 C 0.52 6.93 7.82 -10.99 -0.09 6.84 16 11 O -0.54 -9.52 16.03 5.55 0.09 -9.43 16 12 N -0.73 -9.17 5.43 -60.30 -0.33 -9.50 16 13 C 0.13 2.00 5.00 -4.04 -0.02 1.98 16 14 C -0.11 -1.80 2.45 -88.78 -0.22 -2.02 16 15 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 16 C 0.14 2.84 6.64 -3.06 -0.02 2.82 16 17 N -0.61 -15.33 3.40 -169.94 -0.58 -15.91 16 18 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.16 3.80 5.37 -2.41 -0.01 3.79 16 27 C -0.11 -2.06 3.10 -88.35 -0.27 -2.33 16 28 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 29 C -0.13 -2.06 9.32 37.16 0.35 -1.72 16 30 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 31 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.14 0.87 6.47 -52.49 -0.34 0.53 16 34 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 0.76 8.06 -51.92 -0.42 0.34 16 37 H 0.11 0.88 7.77 -51.93 -0.40 0.48 16 38 H 0.40 4.15 8.40 -40.82 -0.34 3.81 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 41 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.11 2.87 5.88 -51.92 -0.31 2.56 16 45 H 0.01 0.32 7.99 -51.93 -0.41 -0.09 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -35.07 391.92 -8.47 -43.53 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.60 Total: 1.95 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.17 Total: 2.10 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.48 Total: -57.76 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.10 Total: -12.75 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.07 -8.47 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102085034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.694 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds