Wall clock time and date at job start Tue Mar 31 2020 17:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35742 * 116.99730 * 2 1 4 4 C 1.39281 * 120.84802 * 0.02933 * 3 2 1 5 5 C 1.37947 * 119.09084 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82778 * 0.02562 * 5 4 3 7 7 C 1.31954 * 121.85980 * 359.97438 * 6 5 4 8 8 C 1.37987 * 120.82235 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.45565 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47870 * 265.00642 * 9 8 7 11 11 O 1.21289 * 119.99556 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00429 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00340 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47472 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.63985 * 54.29767 * 14 13 12 16 16 C 1.54324 * 110.72077 * 291.15717 * 14 13 12 17 17 N 1.47023 * 107.27151 * 219.44090 * 16 14 13 18 18 C 1.36929 * 125.65026 * 178.90016 * 17 16 14 19 19 H 1.08002 * 120.00089 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00602 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99421 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00586 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46926 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47050 * 120.00447 * 22 20 18 25 25 H 1.48495 * 109.47610 * 240.00688 * 22 20 18 26 26 C 1.47425 * 108.70265 * 358.94167 * 17 16 14 27 27 C 1.55124 * 104.94469 * 24.00507 * 26 17 16 28 28 H 1.08998 * 110.93768 * 81.21216 * 27 26 17 29 29 C 1.53005 * 111.16468 * 205.13294 * 27 26 17 30 30 H 1.08999 * 109.46588 * 299.99548 * 1 2 3 31 31 H 1.08995 * 109.47281 * 59.99391 * 1 2 3 32 32 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.45441 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.58700 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.58841 * 179.97438 * 7 6 5 36 36 H 1.09009 * 109.46736 * 25.00570 * 9 8 7 37 37 H 1.09006 * 109.46932 * 144.99842 * 9 8 7 38 38 H 0.97004 * 120.00303 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47161 * 300.00060 * 13 12 10 40 40 H 1.09000 * 109.46994 * 59.99693 * 13 12 10 41 41 H 1.08998 * 109.88001 * 338.86126 * 16 14 13 42 42 H 1.08995 * 109.87899 * 100.02902 * 16 14 13 43 43 H 0.96997 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.09008 * 110.36651 * 142.96415 * 26 17 16 45 45 H 1.08994 * 110.36953 * 265.17839 * 26 17 16 46 46 H 1.09000 * 109.47285 * 172.16707 * 29 27 26 47 47 H 1.08994 * 109.46713 * 292.16708 * 29 27 26 48 48 H 1.09002 * 109.46831 * 52.16565 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0006 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6458 0.0005 7 6 4.0231 2.5510 -0.0001 8 6 3.4346 1.3029 0.0004 9 6 4.2838 0.0580 -0.0008 10 6 4.4631 -0.4266 -1.4165 11 8 3.9511 0.1792 -2.3341 12 7 5.1913 -1.5335 -1.6628 13 6 5.3651 -2.0048 -3.0389 14 6 6.2274 -3.2687 -3.0401 15 1 5.8061 -4.0219 -2.3743 16 6 7.6810 -2.9383 -2.6406 17 7 8.5629 -3.7504 -3.4917 18 6 9.9318 -3.7351 -3.4664 19 1 10.4520 -3.0861 -2.7774 20 6 10.6512 -4.5545 -4.3255 21 7 10.0173 -5.3458 -5.1648 22 14 12.5187 -4.5342 -4.2904 23 1 12.9840 -3.5661 -3.2649 24 1 13.0223 -5.8903 -3.9549 25 1 13.0346 -4.1303 -5.6230 26 6 7.7292 -4.5832 -4.3776 27 6 6.3770 -3.8298 -4.4790 28 1 6.4346 -3.0226 -5.2091 29 6 5.2337 -4.7896 -4.8149 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2245 2.3566 0.0007 34 1 1.4007 4.5174 0.0020 35 1 5.1000 2.6328 -0.0009 36 1 5.2585 0.2827 0.4325 37 1 3.7938 -0.7167 0.5891 38 1 5.6004 -2.0182 -0.9288 39 1 4.3903 -2.2292 -3.4720 40 1 5.8552 -1.2305 -3.6290 41 1 7.8791 -1.8792 -2.8054 42 1 7.8434 -3.1893 -1.5925 43 1 10.5200 -5.9181 -5.7654 44 1 8.1906 -4.6702 -5.3614 45 1 7.5802 -5.5705 -3.9406 46 1 4.2829 -4.2615 -4.7428 47 1 5.3632 -5.1681 -5.8287 48 1 5.2406 -5.6229 -4.1122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102085034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:07 Heat of formation + Delta-G solvation = -43.870750 kcal Electronic energy + Delta-G solvation = -28376.255864 eV Core-core repulsion = 24431.044324 eV Total energy + Delta-G solvation = -3945.211539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81200 -40.62183 -39.48666 -39.13089 -36.03878 -34.65850 -34.32517 -32.55419 -32.18508 -31.00747 -29.03967 -28.36347 -27.74280 -26.48058 -24.58065 -23.88527 -23.43275 -21.80225 -21.40028 -20.66317 -19.31352 -18.87660 -18.16644 -18.04258 -17.34477 -16.85324 -16.69338 -16.41982 -16.03876 -15.86479 -15.69970 -15.55962 -15.17409 -14.82136 -14.72177 -14.40652 -14.36667 -14.13734 -13.99725 -13.51200 -13.39090 -13.28344 -13.02560 -12.79856 -12.76938 -12.63927 -12.47281 -12.46121 -12.12670 -11.93399 -11.83195 -11.59862 -11.40322 -11.26690 -10.89712 -10.74073 -10.51252 -10.09803 -10.04104 -9.71788 -8.86797 -7.76691 -5.20829 0.09408 0.36398 1.46649 1.47471 1.57691 1.70663 2.19051 2.25002 2.49744 2.87266 3.32750 3.48468 3.64041 3.67094 3.78123 3.84546 3.90526 3.91949 3.98560 4.09469 4.23607 4.34871 4.35288 4.39811 4.44678 4.50863 4.63371 4.65939 4.69853 4.75653 4.77256 4.84268 4.86823 4.96470 4.99790 5.08826 5.10218 5.17991 5.36367 5.41097 5.47511 5.52678 5.59289 5.72718 5.85512 6.21271 6.32751 6.61264 7.04208 7.12153 7.30752 7.80049 8.43669 9.25126 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002276 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.323576 B =12300.398368 C =13303.140429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.168 3.832 4 C -0.262 4.262 5 C 0.123 3.877 6 N -0.534 5.534 7 C 0.130 3.870 8 C -0.165 4.165 9 C -0.082 4.082 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.717 5.717 13 C 0.147 3.853 14 C -0.088 4.088 15 H 0.096 0.904 16 C 0.138 3.862 17 N -0.630 5.630 18 C -0.236 4.236 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.162 3.838 27 C -0.102 4.102 28 H 0.063 0.937 29 C -0.127 4.127 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.184 0.816 35 H 0.172 0.828 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.415 0.585 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.020 0.980 42 H 0.032 0.968 43 H 0.246 0.754 44 H 0.067 0.933 45 H -0.009 1.009 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.782 11.033 14.088 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.114 3.886 4 C -0.283 4.283 5 C -0.032 4.032 6 N -0.247 5.247 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.122 4.122 10 C 0.303 3.697 11 O -0.465 6.465 12 N -0.369 5.369 13 C 0.022 3.978 14 C -0.107 4.107 15 H 0.114 0.886 16 C 0.013 3.987 17 N -0.355 5.355 18 C -0.365 4.365 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.037 3.963 27 C -0.122 4.122 28 H 0.081 0.919 29 C -0.184 4.184 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.182 0.818 34 H 0.201 0.799 35 H 0.189 0.811 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.009 0.991 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.497 11.949 13.364 27.991 hybrid contribution 0.818 -1.193 -0.148 1.454 sum -20.679 10.756 13.216 26.795 Atomic orbital electron populations 1.23419 0.75904 1.05878 1.02552 1.86037 1.23882 1.26108 1.87405 1.19376 0.92185 0.85504 0.91564 1.22470 1.02814 0.92478 1.10510 1.23053 0.90007 0.98341 0.91845 1.67745 1.08266 1.32452 1.16221 1.22815 1.01056 0.86281 0.92341 1.19936 0.91488 0.96848 1.08591 1.20442 1.02679 0.95936 0.93175 1.21024 0.77109 0.79675 0.91888 1.90688 1.50010 1.57689 1.48084 1.45941 1.53087 1.28234 1.09619 1.21113 0.99015 0.94331 0.83290 1.22321 0.93917 0.96586 0.97894 0.88577 1.21508 0.89524 0.93795 0.93862 1.44823 1.01585 1.46861 1.42270 1.19484 0.81728 1.18940 1.16319 0.90168 1.25635 1.02565 0.99054 0.98936 1.70072 1.34189 1.29437 1.26203 0.84995 0.79840 0.77187 0.77237 1.19077 1.21878 1.22013 1.21784 0.87958 0.90437 0.96089 1.22475 0.96128 0.98310 0.95333 0.91894 1.21591 0.96811 0.98518 1.01495 0.90569 0.92065 0.86291 0.81750 0.79940 0.81065 0.84757 0.85817 0.74864 0.91222 0.93448 0.96197 0.95020 0.94411 0.91492 0.99083 0.90950 0.92783 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 113.37 1.12 1.28 16 2 O -0.32 -6.04 9.77 -90.66 -0.89 -6.93 16 3 C 0.17 3.43 6.70 22.76 0.15 3.58 16 4 C -0.26 -4.35 9.11 22.45 0.20 -4.15 16 5 C 0.12 2.21 11.17 84.60 0.95 3.15 16 6 N -0.53 -12.23 10.36 -196.09 -2.03 -14.26 16 7 C 0.13 2.83 10.83 84.61 0.92 3.75 16 8 C -0.17 -3.51 4.40 -19.68 -0.09 -3.60 16 9 C -0.08 -1.43 5.61 29.10 0.16 -1.27 16 10 C 0.52 13.01 7.82 87.66 0.69 13.69 16 11 O -0.58 -20.22 16.03 -3.06 -0.05 -20.27 16 12 N -0.72 -16.54 5.43 -463.07 -2.51 -19.06 16 13 C 0.15 4.13 5.00 86.38 0.43 4.56 16 14 C -0.09 -2.75 2.45 -9.60 -0.02 -2.78 16 15 H 0.10 2.69 8.04 -2.39 -0.02 2.67 16 16 C 0.14 5.42 6.64 86.73 0.58 5.99 16 17 N -0.63 -32.26 3.40 -691.56 -2.35 -34.61 16 18 C -0.24 -13.23 10.27 84.04 0.86 -12.37 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 21 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 22 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 C 0.16 7.94 5.37 86.93 0.47 8.40 16 27 C -0.10 -3.71 3.10 -9.32 -0.03 -3.74 16 28 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 29 C -0.13 -3.68 9.32 71.98 0.67 -3.00 16 30 H 0.08 0.47 7.71 -2.39 -0.02 0.45 16 31 H 0.06 0.58 7.71 -2.39 -0.02 0.56 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.17 1.64 6.47 -2.91 -0.02 1.62 16 34 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.13 1.55 8.06 -2.38 -0.02 1.53 16 37 H 0.12 1.72 7.77 -2.38 -0.02 1.70 16 38 H 0.41 7.36 8.40 -92.71 -0.78 6.58 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.55 8.00 -2.39 -0.02 1.53 16 41 H 0.02 0.80 7.73 -2.39 -0.02 0.79 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.07 3.80 5.88 -2.38 -0.01 3.79 16 45 H -0.01 -0.46 7.99 -2.39 -0.02 -0.48 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 Total: -1.00 -78.42 391.92 2.12 -76.30 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.18 Total: 17.55 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.52 Total: 10.00 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -6.68 Total: -124.59 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.93 Total: -27.20 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.42 2.12 -76.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102085034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.426 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds